Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 0.0e+00 1761.5 902 100.0
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 0.0e+00 1321.6 880 76.5
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 0.0e+00 1313.5 880 76.4
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 0.0e+00 1300.8 879 75.2
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 0.0e+00 1246.5 890 73.7
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 0.0e+00 1243.4 887 71.9
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 0.0e+00 1214.9 880 71.0
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 0.0e+00 1209.5 928 69.4
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 0.0e+00 1155.6 884 68.1
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 0.0e+00 1144.4 883 68.1
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 0.0e+00 1127.1 883 65.9
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 0.0e+00 1111.3 838 69.5
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 7.7e-305 1050.4 880 61.7
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 2.7e-297 1025.4 907 60.0
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 3.2e-295 1018.5 879 61.1
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 1.7e-283 979.5 912 57.2
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 6.4e-283 977.6 892 57.6
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 9.2e-282 973.8 827 59.7
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 1.6e-281 973.0 853 58.4
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 2.3e-280 969.1 878 57.4
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 2.8e-278 962.2 862 58.5
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 8.0e-278 960.7 878 56.8
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 1.8e-277 959.5 878 56.9
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 1.0e-272 943.7 862 57.3
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 1.0e-272 943.7 866 56.9
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 5.0e-272 941.4 864 56.6
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 8.6e-272 940.6 758 63.1
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 3.3e-271 938.7 855 57.7
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 4.0e-269 931.8 879 55.7
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 4.0e-269 931.8 869 56.7
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 1.3e-267 926.8 849 57.5
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.4e-267 924.5 879 54.6
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 6.4e-267 924.5 879 55.9
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 1.9e-266 922.9 879 54.5
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 1.6e-265 919.8 863 56.0
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 2.7e-265 919.1 851 58.4
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 3.5e-265 918.7 876 58.8
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.3e-264 916.0 879 55.2
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 5.1e-264 914.8 869 55.0
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 5.1e-264 914.8 844 57.3
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.1e-263 913.7 879 54.6
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 3.6e-262 908.7 863 55.5
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 1.1e-261 907.1 824 58.1
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.4e-261 906.7 849 56.3
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 2.0e-260 902.9 849 56.5
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 2.0e-260 902.9 772 61.3
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 2.6e-260 902.5 860 54.7
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 3.2e-258 895.6 879 54.7
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 4.1e-258 895.2 855 56.4
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 4.3e-255 885.2 848 54.4
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 1.4e-253 880.2 863 54.1
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.5e-252 876.7 850 55.4
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.4e-252 875.5 875 53.4
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.3e-251 873.6 861 54.0
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 8.4e-251 870.9 923 52.4
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 1.2e-249 867.1 858 55.2
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 7.8e-249 864.4 866 53.3
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 5.6e-247 858.2 876 52.9
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 1.4e-245 853.6 858 53.5
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 1.5e-244 850.1 898 53.0
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 2.9e-243 845.9 858 54.5
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 5.4e-242 841.6 825 55.4
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.6e-241 840.1 875 52.1
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 4.6e-241 838.6 953 50.2
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 3.9e-240 835.5 886 50.8
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 4.2e-234 815.5 880 50.3
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 1.3e-232 810.4 934 48.5
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.1e-231 807.4 864 50.7
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 8.1e-230 801.2 834 51.4
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 1.1e-229 800.8 847 51.4
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.2e-226 789.3 847 49.5
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 5.1e-224 781.9 876 50.2
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.6e-222 776.9 841 48.8
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 3.4e-220 769.2 836 51.1
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 5.5e-218 761.9 855 46.9
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 1.2e-217 760.8 903 49.6
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.3e-215 752.3 875 48.6
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.8e-214 748.8 875 48.3
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 4.8e-214 748.8 847 47.5
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 8.5e-211 738.0 854 47.0
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.5e-204 717.2 870 47.5
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.9e-203 713.0 877 47.4
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.3e-198 697.6 1318 35.8
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 3.7e-198 696.0 913 45.7
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 1.6e-196 690.6 757 50.5
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.5e-194 683.3 784 48.2
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 2.0e-191 673.7 875 45.3
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.2e-190 670.2 673 53.2
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 6.3e-190 668.7 839 43.7
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 1.2e-188 664.5 855 44.3
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.2e-188 664.5 855 44.3
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 3.5e-188 662.9 840 44.6
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 5.9e-188 662.1 842 45.2
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 1.9e-186 657.1 844 44.8
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 7.2e-186 655.2 852 43.9
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 9.4e-186 654.8 852 43.8
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 2.1e-185 653.7 852 43.8
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 4.7e-185 652.5 843 43.9
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 4.7e-185 652.5 523 63.7
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 8.0e-185 651.7 850 43.4
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 3.0e-184 649.8 846 44.0
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 8.8e-184 648.3 853 44.1
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 2.4e-181 640.2 722 47.1
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 7.2e-178 628.6 847 43.8
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 9.5e-178 628.2 1341 33.6
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 2.8e-177 626.7 905 40.2
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 8.0e-177 625.2 869 41.1
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 3.1e-173 613.2 577 58.4
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 1.0e-171 608.2 863 41.5
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 5.7e-167 592.4 912 41.0
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.5e-162 577.8 335 84.5
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.1e-161 573.9 865 39.2
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.8e-160 570.9 463 62.0
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.0e-156 557.4 410 66.6
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 7.3e-154 548.9 841 40.2
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 8.4e-126 455.7 653 42.6
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 1.2e-124 451.8 323 67.8
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 5.8e-119 433.0 312 67.9
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.3e-115 421.8 426 52.6
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 9.6e-114 415.6 458 51.5
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 6.9e-104 382.9 810 34.1
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 9.0e-104 382.5 785 33.1
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.4e-103 380.6 346 60.1
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 8.5e-102 375.9 1067 26.8
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 9.3e-101 372.5 361 53.5
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 7.9e-100 369.4 363 51.8
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 7.7e-95 352.8 379 48.0
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 1.1e-93 349.0 284 60.6
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 2.1e-92 344.7 410 45.4
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.5e-85 321.2 541 38.4
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 5.3e-80 303.5 592 34.5
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.2e-79 302.4 410 43.4
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 3.2e-77 294.3 381 43.8
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 6.1e-76 290.0 387 44.7
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 5.7e-74 283.5 196 66.3
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.9e-71 273.5 493 36.1
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 2.1e-68 265.0 477 35.8
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 5.2e-67 260.4 331 45.9
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 2.3e-62 245.0 239 51.0
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 5.0e-62 243.8 414 37.2
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 3.3e-61 241.1 178 64.0
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 5.7e-58 230.3 471 37.4
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.0e-55 221.9 159 71.1
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 1.1e-48 199.5 262 45.8
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 7.0e-48 196.8 139 67.6
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 3.3e-45 188.0 150 63.3
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 8.0e-44 183.3 353 33.1
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.4e-43 182.6 324 34.3
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 2.3e-43 181.8 309 33.3
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.0e-42 178.7 145 62.1
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 2.2e-41 175.3 198 52.0
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 2.2e-41 175.3 181 54.1
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 5.6e-37 160.6 118 68.6
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.6e-36 159.1 120 62.5
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 1.6e-36 159.1 101 75.2
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 6.8e-35 153.7 184 47.8
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 1.5e-34 152.5 248 36.7
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 7.5e-34 150.2 139 55.4
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.9e-32 145.6 89 77.5
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 1.2e-31 142.9 90 67.8
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.6e-28 132.5 80 80.0
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 2.8e-28 131.7 129 55.0
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 5.2e-27 127.5 81 71.6
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 2.6e-26 125.2 84 64.3
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 2.1e-23 115.5 125 46.4
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 6.2e-20 104.0 137 42.3
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.1e-19 101.7 121 47.1
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 3.8e-17 94.7 90 51.1
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 1.1e-16 93.2 84 63.1
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.1e-16 93.2 115 44.3
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 3.2e-16 91.7 101 53.5
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 9.3e-16 90.1 59 72.9
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 1.3e-14 86.3 87 49.4
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 6.2e-12 77.4 206 28.2
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 6.2e-12 77.4 49 73.5
arahy.Tifrunner.gnm1.ann1.QWX0VP Arachis hypogaea HOM05D003469 ORTHO05D004084 1.1e-11 76.6 105 42.9
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 9.0e-11 73.6 96 42.7
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 1.5e-10 72.8 879 19.2
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 4.9e-09 67.8 48 68.8
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 6.4e-09 67.4 56 51.8
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 1.9e-08 65.9 189 38.1
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 1.2e-07 63.2 55 52.7
Actinidia02458 Actinidia chinensis HOM05D003469 ORTHO05D004084 6.0e-07 60.8 68 54.4
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 1.3e-06 59.7 73 42.5


User provided reference genes

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