Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 5.2e-287 990.3 495 100.0
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 1.6e-264 915.6 497 91.3
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 2.3e-263 911.8 495 91.7
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 1.9e-260 902.1 495 90.5
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 3.2e-260 901.4 497 89.1
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 7.1e-260 900.2 493 90.5
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 1.6e-259 899.0 495 90.3
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 3.5e-259 897.9 497 89.3
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 6.0e-259 897.1 497 89.1
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 1.0e-258 896.3 495 89.9
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 5.6e-257 890.6 497 88.3
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 2.8e-248 861.7 495 85.5
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 1.3e-245 852.8 494 84.6
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 2.2e-245 852.0 494 84.2
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 2.2e-245 852.0 495 84.4
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 2.4e-244 848.6 493 84.0
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 3.2e-244 848.2 495 83.6
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 2.1e-243 845.5 494 84.2
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 4.6e-243 844.3 489 84.5
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 4.6e-243 844.3 490 84.5
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 6.0e-243 844.0 494 83.4
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 3.9e-242 841.3 495 83.0
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 6.7e-242 840.5 494 82.4
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 8.7e-242 840.1 494 82.0
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 4.3e-241 837.8 494 83.0
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.4e-241 837.0 493 82.2
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 1.3e-240 836.3 493 83.0
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 1.3e-240 836.3 492 83.3
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 1.3e-240 836.3 493 82.2
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 3.6e-240 834.7 492 82.9
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.6e-240 834.7 493 81.9
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 3.6e-240 834.7 494 83.4
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 6.2e-240 833.9 495 83.0
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 1.4e-239 832.8 493 81.9
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 2.4e-239 832.0 493 82.6
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.1e-239 831.6 495 82.8
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 4.0e-239 831.2 496 81.9
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 5.3e-239 830.9 495 81.4
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 9.0e-239 830.1 496 82.1
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.2e-238 829.7 495 82.0
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.5e-238 829.3 495 82.2
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.0e-238 828.9 494 82.6
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 3.4e-238 828.2 495 82.0
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.5e-238 827.8 495 82.0
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 4.5e-238 827.8 494 82.4
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.6e-238 827.0 493 81.5
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.3e-237 826.2 494 82.2
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 1.7e-237 825.9 494 81.8
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 2.9e-237 825.1 496 81.2
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.8e-237 824.7 495 81.6
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 3.8e-237 824.7 492 82.1
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 4.9e-237 824.3 493 82.8
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.9e-237 824.3 493 81.7
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.1e-236 823.2 495 81.8
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.1e-236 823.2 493 81.9
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 5.5e-236 820.8 493 81.7
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 9.3e-236 820.1 493 82.2
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 1.6e-235 819.3 495 80.4
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.6e-235 819.3 532 77.4
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 3.5e-235 818.1 492 80.9
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.3e-234 816.2 479 82.9
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 1.8e-234 815.8 492 79.9
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 2.3e-234 815.5 486 81.7
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 3.0e-234 815.1 486 81.5
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 1.1e-233 813.1 494 80.8
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.5e-233 812.8 492 80.5
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.5e-233 812.8 493 80.3
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.9e-233 812.4 492 80.1
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 5.6e-233 810.8 529 76.9
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 9.6e-233 810.1 499 79.8
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.8e-232 808.5 509 79.2
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 4.8e-232 807.7 492 79.7
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 4.8e-232 807.7 505 79.0
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 1.1e-231 806.6 494 80.8
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 1.8e-231 805.8 487 81.7
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 1.8e-231 805.8 493 79.9
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.2e-230 803.1 470 83.4
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 2.6e-230 802.0 486 81.3
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 3.4e-230 801.6 490 80.4
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 3.4e-230 801.6 494 80.4
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 7.6e-230 800.4 492 79.7
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 1.3e-229 799.7 488 80.9
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.3e-229 799.7 485 81.0
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 1.3e-229 799.7 486 81.1
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 6.5e-229 797.3 486 80.7
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 1.4e-228 796.2 489 80.4
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.9e-228 795.8 486 80.9
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 4.2e-228 794.7 492 80.1
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 4.2e-228 794.7 494 80.0
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 9.3e-228 793.5 487 80.3
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 1.2e-227 793.1 490 80.0
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 2.7e-227 792.0 487 80.5
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 2.7e-227 792.0 486 80.5
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 2.7e-227 792.0 486 80.2
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 4.6e-227 791.2 486 80.5
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 6.0e-227 790.8 484 80.0
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.3e-226 789.6 487 79.9
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 1.8e-226 789.3 486 80.2
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 2.3e-226 788.9 494 78.9
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 1.1e-223 780.0 483 79.9
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 3.1e-223 778.5 509 77.0
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.9e-220 769.2 490 76.1
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.0e-218 763.5 488 76.0
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 3.4e-214 748.4 441 82.5
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 7.2e-212 740.7 434 82.9
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 6.7e-210 734.2 437 82.4
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 1.1e-209 733.4 435 83.0
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 1.1e-209 733.4 389 93.3
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 8.2e-208 727.2 492 73.8
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 1.2e-206 723.4 441 79.8
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 2.6e-206 722.2 439 81.8
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 1.0e-205 720.3 488 73.0
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 8.5e-205 717.2 440 80.5
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 3.3e-201 705.3 482 73.2
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.1e-196 690.3 498 72.9
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 6.3e-192 674.5 489 67.3
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 3.0e-186 655.6 492 68.9
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.2e-184 649.4 497 68.8
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 3.5e-182 642.1 471 70.9
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 2.5e-180 636.0 402 76.4
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 2.6e-177 625.9 380 81.3
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.0e-174 616.3 383 79.4
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 3.8e-173 612.1 507 61.7
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 1.7e-168 596.7 391 77.0
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 1.5e-156 557.0 346 78.3
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 2.5e-156 556.2 461 65.3
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 5.8e-153 545.0 382 72.8
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 1.1e-146 524.2 537 51.0
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.5e-134 482.6 267 87.3
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.9e-124 450.3 465 51.0
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 5.6e-116 422.2 245 83.3
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 9.6e-116 421.4 239 84.9
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 3.1e-106 389.8 430 51.2
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 6.9e-106 388.7 238 76.5
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.6e-105 386.7 228 83.3
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 3.4e-105 386.3 301 67.4
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 4.6e-102 375.9 255 73.7
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 6.7e-101 372.1 481 47.4
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 3.4e-97 359.8 303 65.3
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.7e-93 345.5 310 60.3
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.1e-92 344.7 235 73.2
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 1.8e-85 320.9 242 66.9
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 1.1e-79 301.6 254 64.2
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 2.0e-73 280.8 162 86.4
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 4.7e-54 216.5 259 48.6
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 7.5e-52 209.1 148 68.2
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 1.2e-46 191.8 103 87.4
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 1.4e-45 188.3 96 91.7
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.3e-43 181.8 151 63.6
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 4.9e-43 179.9 297 40.4
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.9e-42 177.9 143 65.7
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 3.2e-42 177.2 104 81.7
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 5.6e-39 166.4 118 69.5
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 7.1e-34 149.4 148 55.4
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.9e-31 141.4 75 88.0
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 4.7e-30 136.7 85 78.8
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 2.6e-28 131.0 157 50.3
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 2.9e-27 127.5 79 73.4
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 4.4e-20 103.6 101 56.4
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 1.7e-16 91.7 71 63.4
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.6e-14 85.1 61 72.1
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 1.1e-10 72.4 36 88.9
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 1.1e-10 72.4 50 64.0
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 1.2e-09 68.9 51 66.7
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 3.9e-08 63.9 30 90.0
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 9.6e-07 59.3 38 76.3


User provided reference genes

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