Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 8.7e-145 516.9 257 100.0
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 5.0e-116 421.4 258 81.0
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 1.1e-110 403.7 253 78.3
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 3.1e-110 402.1 257 75.5
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 7.0e-110 401.0 255 76.5
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 3.8e-108 395.2 255 76.5
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 2.0e-104 382.9 241 76.8
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 1.1e-102 377.1 239 76.6
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 7.0e-102 374.4 246 76.0
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 2.9e-100 369.0 257 71.6
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 2.5e-99 365.9 257 70.8
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 8.9e-97 357.5 231 78.4
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 3.2e-94 349.0 262 67.6
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 9.5e-91 337.4 213 77.0
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.7e-84 316.6 209 75.1
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 3.6e-82 308.9 276 60.5
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 2.4e-78 296.2 254 56.7
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 7.8e-77 291.2 254 55.9
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 8.6e-76 287.7 260 55.4
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.5e-75 286.2 257 56.4
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 3.3e-75 285.8 255 53.7
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 7.3e-75 284.6 254 55.1
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 7.3e-75 284.6 257 55.6
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 2.1e-74 283.1 261 55.2
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 3.6e-74 282.3 258 57.0
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 6.8e-73 278.1 254 52.8
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 6.8e-73 278.1 255 53.7
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 8.9e-73 277.7 255 51.8
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 1.5e-72 276.9 255 53.7
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 2.0e-72 276.6 260 55.0
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 4.4e-72 275.4 258 54.3
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 5.8e-72 275.0 253 53.8
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 5.8e-72 275.0 255 52.9
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 5.8e-72 275.0 255 54.5
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 5.8e-72 275.0 255 53.7
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 7.6e-72 274.6 254 53.5
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 9.9e-72 274.2 259 54.8
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 4.9e-71 271.9 255 53.3
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.1e-70 270.8 258 54.7
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 1.1e-70 270.8 254 53.5
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 4.1e-70 268.9 248 54.4
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 1.2e-69 267.3 255 52.5
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 2.1e-69 266.5 258 53.1
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 2.7e-69 266.2 254 52.0
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 2.7e-69 266.2 257 52.5
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 1.3e-68 263.8 256 52.7
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.7e-68 263.5 257 52.5
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 2.3e-68 263.1 261 52.1
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 3.0e-68 262.7 254 54.3
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 3.9e-68 262.3 211 61.1
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 6.6e-68 261.5 242 52.1
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 6.6e-68 261.5 254 52.4
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 9.6e-67 257.7 257 51.8
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 2.1e-66 256.5 257 52.9
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 2.1e-66 256.5 243 50.2
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.8e-66 256.1 260 51.9
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 3.6e-66 255.8 257 50.6
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 3.6e-66 255.8 257 50.2
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 4.7e-66 255.4 259 50.2
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 6.2e-66 255.0 257 50.6
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 8.1e-66 254.6 258 51.6
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.8e-65 253.4 257 50.2
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 3.1e-65 252.7 256 50.4
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 4.0e-65 252.3 257 50.2
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 1.5e-64 250.4 221 55.7
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 2.6e-64 249.6 254 51.2
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 3.4e-64 249.2 257 49.0
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 3.4e-64 249.2 260 48.5
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 5.8e-64 248.4 250 48.0
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 7.6e-64 248.1 259 47.1
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 9.9e-64 247.7 253 49.8
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 3.8e-63 245.7 239 53.1
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 4.9e-63 245.4 254 50.4
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 6.4e-63 245.0 253 49.4
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.4e-62 243.8 256 49.6
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 3.2e-62 242.7 251 48.2
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 5.4e-62 241.9 255 47.5
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 9.3e-62 241.1 238 52.5
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 9.3e-62 241.1 221 53.4
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 6.0e-61 238.4 232 51.7
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 1.0e-60 237.7 255 47.8
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.3e-60 237.3 243 52.7
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 7.3e-59 231.5 242 49.6
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 7.3e-59 231.5 260 46.2
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.6e-58 230.3 201 54.2
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 3.6e-58 229.2 242 48.8
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 4.8e-58 228.8 260 45.4
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 8.1e-58 228.0 259 44.4
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.8e-57 226.9 257 47.5
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.8e-57 226.9 258 46.9
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 1.8e-57 226.9 251 46.2
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 1.8e-57 226.9 251 46.2
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 1.8e-57 226.9 251 46.2
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 2.4e-57 226.5 257 46.7
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 3.1e-57 226.1 257 46.7
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 5.3e-57 225.3 244 48.4
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 5.3e-57 225.3 257 48.2
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 2.0e-56 223.4 230 49.6
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 2.0e-56 223.4 236 46.6
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 2.6e-56 223.0 234 48.7
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 4.5e-56 222.2 239 47.3
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 5.8e-56 221.9 246 45.9
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 5.8e-56 221.9 243 47.3
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 1.3e-55 220.7 265 45.7
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 1.3e-55 220.7 265 45.7
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 1.7e-55 220.3 233 48.5
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.7e-55 220.3 251 47.0
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.7e-55 220.3 255 47.5
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 2.9e-55 219.5 255 45.5
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 3.8e-55 219.2 258 45.0
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 3.8e-55 219.2 241 46.9
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.4e-55 218.4 252 46.8
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 5.4e-54 215.3 242 45.9
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.2e-53 214.2 179 56.4
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 1.6e-53 213.8 237 46.8
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.6e-53 213.8 230 47.4
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.7e-53 213.0 278 43.9
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 3.5e-53 212.6 279 43.4
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 7.9e-53 211.5 280 40.7
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 1.0e-52 211.1 265 43.8
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 1.0e-52 211.1 265 43.8
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 1.0e-52 211.1 242 46.7
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 2.3e-52 209.9 241 46.1
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.1e-51 207.6 258 43.8
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 1.5e-51 207.2 259 45.2
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.5e-51 207.2 248 44.4
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 1.5e-51 207.2 233 47.2
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 2.5e-51 206.5 203 51.2
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 5.6e-51 205.3 191 51.8
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 3.7e-50 202.6 221 45.7
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 4.8e-50 202.2 220 43.6
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.1e-49 201.1 213 46.0
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 3.1e-49 199.5 213 48.4
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 4.0e-49 199.1 273 41.4
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 1.5e-48 197.2 180 54.4
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 3.4e-48 196.1 212 47.2
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 3.4e-48 196.1 214 46.3
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 7.6e-48 194.9 303 39.3
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 7.6e-48 194.9 263 41.8
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 4.9e-47 192.2 257 40.9
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 1.6e-45 187.2 180 51.7
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.7e-45 186.4 180 51.7
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 6.0e-45 185.3 172 52.3
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 3.0e-44 183.0 222 44.1
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 1.1e-43 181.0 256 46.5
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 2.1e-42 176.8 195 45.1
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 9.0e-41 171.4 254 40.2
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 1.7e-39 167.2 224 41.5
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 2.2e-39 166.8 242 41.3
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 4.9e-39 165.6 257 38.9
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.1e-35 154.5 140 53.6
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 1.9e-35 153.7 160 45.0
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 9.7e-35 151.4 219 39.7
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 1.6e-34 150.6 205 41.5
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 1.3e-31 141.0 169 41.4
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 1.3e-31 141.0 223 37.2
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 8.5e-31 138.3 181 41.4
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 2.5e-30 136.7 294 30.3
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 2.5e-30 136.7 130 52.3
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 5.5e-30 135.6 318 30.2
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.1e-29 133.7 120 56.7
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 2.7e-29 133.3 101 65.3
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 1.3e-28 131.0 216 35.2
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 5.7e-27 125.6 240 31.7
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 6.9e-25 118.6 165 39.4
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.0e-24 117.1 81 65.4
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 1.3e-23 114.4 263 31.2
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 2.9e-23 113.2 262 32.1
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 2.5e-22 110.2 137 43.8
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 3.2e-22 109.8 85 60.0
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 7.9e-21 105.1 196 35.7
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.8e-20 104.0 148 41.2
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 4.4e-19 99.4 74 62.2
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 2.2e-15 87.0 132 34.8
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 2.5e-14 83.6 111 43.2
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-13 80.9 177 32.8
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 3.9e-12 76.3 142 35.9
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 3.7e-10 69.7 68 45.6
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.8e-09 67.4 75 46.7
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 4.1e-09 66.2 44 68.2
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 2.6e-08 63.5 41 65.9
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 4.5e-08 62.8 77 48.1
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 2.5e-06 57.0 103 36.9


User provided reference genes

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