Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 4.9e-98 361.3 204 100.0
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 5.8e-59 231.5 147 93.2
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 1.6e-56 223.4 148 72.3
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 4.6e-56 221.9 144 72.9
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 1.1e-54 217.2 146 71.9
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 9.6e-54 214.2 146 71.9
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 3.1e-52 209.1 145 69.0
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 1.5e-51 206.8 145 68.3
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 3.4e-51 205.7 147 66.0
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 1.0e-50 204.1 146 72.6
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 1.3e-50 203.8 146 73.3
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 2.1e-48 196.4 146 65.1
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.0e-47 194.1 148 64.2
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 1.3e-47 193.7 148 64.2
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 3.0e-47 192.6 146 64.4
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 3.9e-47 192.2 147 63.9
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 3.9e-47 192.2 147 62.6
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 3.9e-47 192.2 147 62.6
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 3.9e-47 192.2 147 63.9
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 3.9e-47 192.2 143 67.1
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 5.1e-47 191.8 147 61.9
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 5.1e-47 191.8 147 61.9
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 6.7e-47 191.4 146 63.0
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 1.1e-46 190.7 146 61.0
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 1.1e-46 190.7 146 66.4
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 1.9e-46 189.9 146 63.0
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 1.9e-46 189.9 146 62.3
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 2.5e-46 189.5 146 61.0
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 2.5e-46 189.5 147 61.2
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.3e-46 189.1 146 61.6
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 3.3e-46 189.1 147 63.3
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 4.3e-46 188.7 146 60.3
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 5.7e-46 188.3 147 61.2
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 7.4e-46 188.0 147 62.6
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 9.6e-46 187.6 146 61.6
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 9.6e-46 187.6 148 60.8
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 1.3e-45 187.2 142 63.4
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.3e-45 187.2 147 62.6
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.3e-45 187.2 147 61.9
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.6e-45 186.8 147 62.6
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.1e-45 186.4 146 61.6
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 2.1e-45 186.4 147 61.9
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 2.1e-45 186.4 147 59.9
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 2.1e-45 186.4 146 58.9
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 3.7e-45 185.7 147 60.5
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 4.8e-45 185.3 147 59.9
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 4.8e-45 185.3 147 59.9
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 6.3e-45 184.9 138 63.0
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 6.3e-45 184.9 147 60.5
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 6.3e-45 184.9 148 60.8
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 8.2e-45 184.5 147 60.5
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 8.2e-45 184.5 142 63.4
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 8.2e-45 184.5 147 61.9
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 1.8e-44 183.3 147 61.2
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 2.4e-44 183.0 146 59.6
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 2.4e-44 183.0 150 59.3
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.1e-44 182.6 141 61.0
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 4.1e-44 182.2 111 70.3
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 5.3e-44 181.8 147 59.2
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 9.0e-44 181.0 139 61.9
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 1.5e-43 180.3 147 58.5
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 1.5e-43 180.3 146 60.3
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 1.5e-43 180.3 146 60.3
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 1.5e-43 180.3 146 60.3
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 2.0e-43 179.9 146 58.9
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 2.0e-43 179.9 148 59.5
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.0e-43 179.9 102 79.4
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 2.0e-43 179.9 146 59.6
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 2.6e-43 179.5 110 74.5
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 2.6e-43 179.5 110 74.5
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 2.6e-43 179.5 141 61.0
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.6e-43 179.5 141 61.0
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 2.6e-43 179.5 148 60.8
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 4.5e-43 178.7 164 55.5
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 7.6e-43 177.9 141 59.6
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 7.6e-43 177.9 136 64.7
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 1.0e-42 177.6 103 76.7
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 1.3e-42 177.2 144 60.4
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.3e-42 177.2 147 57.8
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 2.2e-42 176.4 146 58.9
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 2.2e-42 176.4 147 57.8
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 5.0e-42 175.3 111 69.4
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 5.0e-42 175.3 103 76.7
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 5.0e-42 175.3 103 76.7
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 6.5e-42 174.9 149 59.1
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 6.5e-42 174.9 146 61.0
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 8.5e-42 174.5 138 66.7
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 8.5e-42 174.5 147 57.1
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 1.4e-41 173.7 146 57.5
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 2.5e-41 172.9 108 73.1
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 5.5e-41 171.8 147 55.8
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 9.3e-41 171.0 147 54.4
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 9.3e-41 171.0 183 50.3
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 1.2e-40 170.6 153 54.9
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 2.1e-40 169.9 147 54.4
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 2.1e-40 169.9 147 57.1
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 2.7e-40 169.5 162 53.7
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.6e-40 169.1 138 62.3
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 1.3e-39 167.2 143 55.9
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 3.9e-39 165.6 143 55.2
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 3.9e-39 165.6 147 55.8
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 6.7e-39 164.9 136 59.6
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 6.7e-39 164.9 138 58.0
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 8.7e-39 164.5 145 56.6
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 1.5e-38 163.7 136 55.1
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 5.7e-38 161.8 112 69.6
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 7.4e-38 161.4 144 61.1
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 7.4e-38 161.4 138 55.1
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 1.6e-37 160.2 113 65.5
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 1.6e-37 160.2 144 55.6
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 2.2e-37 159.8 108 64.8
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 3.7e-37 159.1 109 62.4
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 6.3e-37 158.3 145 55.9
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 8.2e-37 157.9 145 53.8
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 1.8e-36 156.8 145 53.1
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 5.3e-36 155.2 150 52.7
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 1.5e-35 153.7 146 53.4
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 2.0e-35 153.3 114 57.9
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 4.5e-35 152.1 207 43.0
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 1.7e-34 150.2 95 69.5
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.5e-33 146.4 155 47.7
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 1.8e-31 140.2 90 72.2
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 3.0e-31 139.4 103 58.3
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 3.0e-31 139.4 91 69.2
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 3.0e-31 139.4 89 69.7
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 3.9e-31 139.0 89 69.7
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 5.1e-31 138.7 150 50.7
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.0e-30 136.7 81 75.3
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 8.2e-29 131.3 92 65.2
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 1.8e-28 130.2 168 41.7
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 2.4e-28 129.8 94 66.0
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 3.4e-27 125.9 74 75.7
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 8.5e-26 121.3 74 75.7
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 1.9e-25 120.2 74 77.0
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.9e-25 120.2 119 51.3
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 2.5e-25 119.8 117 48.7
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 7.2e-25 118.2 154 44.2
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.6e-24 117.1 108 52.8
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 7.9e-24 114.8 181 44.8
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 4.4e-22 109.0 229 34.1
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 5.7e-22 108.6 58 89.7
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 1.2e-19 100.9 70 67.1
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 1.6e-19 100.5 69 68.1
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.1e-16 90.1 104 43.3
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.0e-15 86.3 104 39.4
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 4.0e-15 85.9 53 69.8
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 5.2e-15 85.5 90 46.7
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 2.0e-14 83.6 49 77.6
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 4.4e-14 82.4 64 60.9
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 7.5e-14 81.6 151 35.1
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.2e-13 80.1 104 37.5
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 6.5e-10 68.6 173 27.2
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 1.5e-09 67.4 49 57.1
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 2.5e-09 66.6 51 62.7
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.5e-09 66.6 56 48.2
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 6.1e-08 62.0 39 69.2
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 6.1e-08 62.0 39 69.2
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 2.3e-07 60.1 34 76.5
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 3.0e-07 59.7 33 78.8


User provided reference genes

Program Settings