Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 4753.7 2393 100.0
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 3966.8 2397 82.5
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 3952.5 2400 82.4
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 3949.8 2399 82.4
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 3929.8 2370 82.8
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 3889.3 2401 81.4
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 3868.2 2402 80.3
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 3821.9 2404 79.8
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 3697.1 2408 77.1
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 3677.1 2444 75.9
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 3010.3 2433 62.1
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 2986.4 2455 62.5
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 2984.5 2407 62.9
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 2936.0 1826 80.2
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 2928.7 2444 61.5
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 2858.2 2433 59.7
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2855.9 2418 59.7
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 2844.3 2416 59.9
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 2837.8 2423 60.0
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2818.9 2412 59.9
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2818.5 2419 59.1
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2803.9 2433 59.2
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2798.5 2457 58.0
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2797.7 2457 58.2
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2796.9 2457 58.2
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2793.8 2437 59.0
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2783.4 2430 58.7
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2781.1 2457 57.8
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2779.6 2430 58.9
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2774.6 2429 59.0
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2771.5 2432 58.3
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2754.2 2410 59.0
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2748.0 2439 58.5
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2746.1 2429 57.9
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2736.8 2432 57.9
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2735.7 2432 57.8
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2720.3 2425 58.1
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2719.1 2434 57.7
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2717.2 2446 57.4
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2680.2 2474 56.7
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2636.7 2361 56.9
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2615.9 2453 55.4
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2613.6 2449 55.2
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2578.1 2409 56.0
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2555.0 2430 53.8
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2535.8 2431 54.3
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2533.4 2097 62.0
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2504.6 2394 54.1
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2503.0 2451 54.6
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2495.3 2386 53.9
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 2492.2 1559 80.2
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2474.1 2420 53.8
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2473.4 2422 53.7
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2460.6 2421 53.0
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2460.3 2428 52.9
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2459.9 2419 52.9
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2454.1 2426 52.8
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2454.1 2419 53.2
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2453.3 2433 52.4
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2447.2 2421 53.2
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2444.5 2428 53.1
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2433.7 2430 52.9
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2417.1 2423 52.4
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2414.8 2397 53.1
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2413.6 2423 52.5
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2410.2 2427 52.3
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2409.8 2442 51.7
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2408.6 2421 52.8
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2399.0 2433 52.6
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2397.5 2450 51.8
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2395.5 2425 52.3
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2395.2 2447 51.9
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2390.1 2407 52.4
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2382.8 2422 51.3
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2378.2 2437 51.9
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2372.0 2444 51.5
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2366.7 2421 51.5
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2364.0 2415 50.4
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2362.0 2443 51.9
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2353.9 2431 51.6
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2353.2 2387 52.3
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2346.2 2435 50.3
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2337.4 2431 51.3
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2323.9 2075 57.9
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2317.0 2075 57.7
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2313.5 2423 50.6
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2306.2 2423 51.6
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2302.7 2409 52.3
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2281.5 2424 49.6
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 2040.0 2387 46.2
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 2037.3 2251 48.6
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1964.5 2414 45.0
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1869.0 2497 43.2
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1736.5 1644 55.0
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1698.7 1454 59.4
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1687.2 2326 42.1
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1681.8 1454 59.1
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1619.8 1381 59.5
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1455.3 1458 52.7
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1384.8 1101 63.0
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1331.6 1382 51.0
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1313.1 885 73.3
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1251.9 1423 48.2
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1210.3 1522 44.2
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1171.4 1167 52.3
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1144.8 1044 55.4
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1114.4 852 68.1
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 8.1e-293 1011.9 1388 41.9
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 4.3e-286 989.6 1008 52.0
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 2.9e-282 976.9 1034 50.1
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 2.1e-277 960.7 2540 28.8
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 3.0e-255 887.1 2095 30.5
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 5.7e-246 856.3 2125 30.0
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.4e-233 815.1 1488 35.2
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.4e-215 755.4 799 50.3
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 1.8e-207 728.4 2391 26.6
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 6.8e-207 726.5 763 48.5
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 2.9e-181 641.3 793 43.3
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 7.4e-145 520.4 571 47.1
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 4.2e-124 451.4 268 84.0
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 1.8e-114 419.5 319 63.3
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 2.9e-109 402.1 458 47.6
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 8.2e-104 384.0 464 45.7
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 9.8e-97 360.5 399 48.6
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 2.5e-92 345.9 326 53.1
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.0e-85 323.9 318 55.0
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 9.8e-81 307.4 313 55.6
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 5.4e-79 301.6 433 39.7
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 1.2e-75 290.4 153 95.4
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 2.5e-68 266.2 339 41.6
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 3.3e-68 265.8 433 36.7
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 1.2e-67 263.8 213 57.3
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 1.6e-67 263.5 391 39.9
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 7.5e-65 254.6 278 54.3
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 3.2e-63 249.2 151 82.8
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 7.3e-60 238.0 378 39.4
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.2e-57 230.7 477 33.3
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 7.8e-54 218.0 131 79.4
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.0e-49 203.4 268 48.5
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 2.1e-46 193.4 122 77.0
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.5e-46 192.6 186 55.4
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 1.7e-45 190.3 122 81.1
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 1.1e-44 187.6 124 71.0
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 3.6e-43 182.6 110 82.7
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 6.2e-43 181.8 189 55.0
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 2.6e-41 176.4 792 23.0
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 4.9e-40 172.2 123 66.7
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 3.6e-35 156.0 140 60.0
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 7.6e-33 148.3 322 33.5
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 2.4e-31 143.3 116 63.8
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 9.3e-31 141.4 100 65.0
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.3e-29 136.7 83 83.1
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 9.6e-28 131.3 206 37.4
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.1e-26 127.9 287 29.3
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 5.3e-26 125.6 76 78.9
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 1.2e-25 124.4 77 74.0
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 4.5e-25 122.5 451 24.8
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 5.8e-25 122.1 76 77.6
Psat0s2975g0040 Pisum sativum HOM05D000832 ORTHO05D000900 5.9e-17 95.5 51 80.4
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 5.9e-17 95.5 51 80.4
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 5.9e-17 95.5 51 80.4
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 6.7e-13 82.0 96 41.7
Psat6g077920 Pisum sativum HOM05D003208 ORTHO05D009148 2.2e-11 77.0 49 75.5
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.8e-11 75.9 177 36.2
Psat3g007440 Pisum sativum HOM05D000832 ORTHO05D000900 1.4e-10 74.3 40 77.5
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.4e-10 73.6 95 41.1
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 3.1e-10 73.2 101 41.6
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 3.8e-08 66.2 129 33.3
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 8.5e-08 65.1 42 73.8
Psat0ss3938g0040 Pisum sativum HOM05D001673 ORTHO05D000895 8.5e-08 65.1 39 76.9
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 1.6e-06 60.8 74 36.5
BcaC03g17980 Brassica carinata HOM05D004333 ORTHO05D005363 4.6e-06 59.3 53 56.6
Psat4g081160 Pisum sativum HOM05D001550 ORTHO05D001611 4.6e-06 59.3 39 64.1


User provided reference genes

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