Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 3.6e-48 194.5 94 100.0
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 1.3e-40 169.5 94 84.0
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 9.9e-38 159.8 94 83.0
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 1.4e-36 156.0 94 78.7
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 2.4e-36 155.2 93 75.3
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 4.2e-36 154.5 94 75.5
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 4.2e-36 154.5 94 78.7
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 1.8e-34 149.1 98 73.5
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 3.0e-34 148.3 93 73.1
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 6.7e-34 147.1 89 76.4
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 6.7e-34 147.1 92 72.8
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 1.1e-33 146.4 91 73.6
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 3.3e-33 144.8 92 70.7
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 4.3e-33 144.4 93 69.9
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 5.6e-33 144.1 93 73.1
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 7.4e-33 143.7 93 72.0
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 7.4e-33 143.7 92 72.8
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 9.6e-33 143.3 89 75.3
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 9.6e-33 143.3 89 75.3
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 9.6e-33 143.3 89 75.3
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 2.1e-32 142.1 105 67.6
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 6.2e-32 140.6 93 68.8
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 6.2e-32 140.6 92 69.6
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 8.1e-32 140.2 92 69.6
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 1.1e-31 139.8 94 70.2
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 1.1e-31 139.8 92 68.5
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 1.4e-31 139.4 93 67.7
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 1.8e-31 139.0 93 66.7
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 2.4e-31 138.7 90 67.8
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 3.1e-31 138.3 94 69.1
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 6.9e-31 137.1 93 68.8
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 9.0e-31 136.7 93 68.8
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 1.5e-30 136.0 93 66.7
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 2.6e-30 135.2 93 67.7
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 3.4e-30 134.8 92 68.5
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 3.4e-30 134.8 93 69.9
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 4.5e-30 134.4 93 66.7
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 4.5e-30 134.4 93 66.7
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 7.6e-30 133.7 93 66.7
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 7.6e-30 133.7 93 66.7
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 9.9e-30 133.3 95 65.3
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 9.9e-30 133.3 93 66.7
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 9.9e-30 133.3 92 65.2
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 1.3e-29 132.9 92 66.3
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 2.2e-29 132.1 94 66.0
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 1.4e-28 129.4 94 64.9
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 2.5e-28 128.6 94 67.0
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 2.5e-28 128.6 94 66.0
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 5.5e-28 127.5 94 63.8
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 5.5e-28 127.5 94 63.8
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 7.1e-28 127.1 87 64.4
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 1.6e-27 125.9 93 64.5
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 1.6e-27 125.9 133 50.4
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 2.1e-27 125.6 92 60.9
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 3.5e-27 124.8 92 64.1
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 4.6e-27 124.4 93 64.5
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 6.0e-27 124.0 92 67.4
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 1.0e-26 123.2 90 63.3
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 1.8e-26 122.5 93 62.4
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 1.8e-26 122.5 93 62.4
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 3.0e-26 121.7 90 63.3
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 6.7e-26 120.6 87 64.4
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 1.5e-25 119.4 93 59.1
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 2.5e-25 118.6 92 60.9
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 4.3e-25 117.9 93 59.1
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 5.6e-25 117.5 93 59.1
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 5.6e-25 117.5 93 59.1
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 5.6e-25 117.5 93 59.1
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 5.6e-25 117.5 93 59.1
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 5.6e-25 117.5 93 59.1
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 7.4e-25 117.1 93 60.2
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 1.6e-24 115.9 89 61.8
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 2.1e-24 115.5 93 59.1
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 4.8e-24 114.4 93 58.1
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 6.2e-24 114.0 71 73.2
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 8.2e-24 113.6 94 58.5
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 8.2e-24 113.6 91 61.5
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 2.4e-23 112.1 141 43.3
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 4.0e-23 111.3 75 68.0
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 5.3e-23 110.9 86 62.8
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 6.9e-23 110.5 93 57.0
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 5.8e-22 107.5 70 71.4
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 5.8e-22 107.5 92 62.0
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 7.6e-22 107.1 87 56.3
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 1.3e-21 106.3 84 56.0
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 4.9e-21 104.4 70 68.6
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 6.5e-21 104.0 164 38.4
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 1.1e-20 103.2 91 58.2
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 2.1e-19 99.0 93 54.8
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 4.6e-19 97.8 65 67.7
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 6.0e-19 97.4 94 58.5
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 2.3e-18 95.5 95 52.6
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 3.3e-17 91.7 60 73.3
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 4.3e-17 91.3 62 66.1
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 5.7e-17 90.9 65 66.2
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 5.7e-17 90.9 64 67.2
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 2.8e-16 88.6 70 57.1
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 6.3e-16 87.4 50 74.0
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 6.5e-13 77.4 67 59.7
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 6.5e-13 77.4 49 71.4
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 5.5e-12 74.3 54 63.0
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 1.6e-11 72.8 49 61.2
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 3.7e-08 61.6 46 67.4
Ca_08439_v3 Cicer arietinum L. HOM05D007428 ORTHO05D009308 6.3e-08 60.8 59 54.2
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 1.8e-07 59.3 44 61.4
HanXRQChr17g0533231 Helianthus annuus HOM05D007428 ORTHO05D009308 4.1e-07 58.2 44 61.4


User provided reference genes

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