Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 1.5e-297 1025.4 516 100.0
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 2.0e-249 865.5 519 84.0
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 7.6e-249 863.6 519 84.8
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 2.2e-248 862.1 463 91.6
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 5.0e-248 860.9 515 84.7
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 6.5e-248 860.5 519 84.6
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 8.5e-248 860.1 518 84.7
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.5e-244 848.6 517 83.8
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 3.1e-242 841.6 519 82.5
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 5.5e-239 830.9 520 80.8
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 5.3e-234 814.3 461 85.0
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 4.5e-233 811.2 470 84.0
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 1.9e-231 805.8 484 82.0
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 7.2e-231 803.9 461 84.2
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 9.4e-231 803.5 514 78.0
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 2.7e-230 802.0 461 83.7
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.6e-230 801.6 461 84.6
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 3.6e-230 801.6 461 83.9
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 6.1e-230 800.8 519 77.6
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 7.9e-230 800.4 463 84.7
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.0e-229 800.0 514 78.6
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.0e-229 800.0 461 83.7
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.8e-229 799.3 461 83.5
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 3.9e-229 798.1 519 77.3
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 6.7e-229 797.3 517 78.5
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 8.8e-229 797.0 461 84.6
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 5.7e-228 794.3 472 80.9
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 5.7e-228 794.3 461 83.5
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 9.7e-228 793.5 519 76.9
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.3e-227 793.1 461 83.5
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 2.8e-227 792.0 461 83.3
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 3.7e-227 791.6 496 78.8
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 6.3e-227 790.8 459 83.2
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 1.1e-226 790.0 517 76.2
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.4e-226 789.6 460 83.9
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 2.4e-226 788.9 517 76.8
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 3.1e-226 788.5 466 81.5
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 5.3e-226 787.7 468 82.1
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 9.1e-226 786.9 457 83.6
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 9.1e-226 786.9 463 83.2
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 3.5e-225 785.0 464 81.9
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 3.5e-225 785.0 468 82.3
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 5.9e-225 784.3 459 82.6
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 7.7e-225 783.9 523 75.7
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 7.7e-225 783.9 466 80.7
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.3e-224 783.1 463 82.7
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.3e-224 783.1 516 75.2
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 2.2e-224 782.3 461 82.6
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 2.9e-224 781.9 474 80.8
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 2.9e-224 781.9 516 75.2
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 6.5e-224 780.8 461 82.0
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.1e-223 780.0 461 82.6
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 9.4e-223 776.9 466 80.9
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 9.4e-223 776.9 531 73.3
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 1.2e-222 776.5 478 79.3
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.1e-222 775.8 495 78.0
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 2.1e-222 775.8 500 77.0
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.7e-222 775.4 459 81.0
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 3.6e-222 775.0 466 80.9
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 6.1e-222 774.2 457 83.2
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 6.1e-222 774.2 462 81.4
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 8.0e-222 773.9 552 71.9
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 3.0e-221 771.9 459 80.2
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 4.0e-221 771.5 460 80.9
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 5.2e-221 771.2 460 80.4
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 6.7e-221 770.8 462 81.0
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 6.7e-221 770.8 459 81.7
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.2e-220 770.0 462 80.3
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 1.2e-220 770.0 459 80.4
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 2.0e-220 769.2 523 74.2
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.0e-220 769.2 481 79.2
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 7.5e-220 767.3 460 79.3
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.3e-219 766.5 459 81.9
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.8e-218 762.7 459 81.0
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 3.1e-218 761.9 456 80.7
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 5.3e-218 761.1 461 80.3
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 9.1e-218 760.4 467 79.7
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.2e-217 760.0 513 74.9
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 7.7e-217 757.3 459 80.4
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 6.5e-216 754.2 459 78.2
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 8.5e-216 753.8 459 78.6
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.5e-215 753.1 496 73.2
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 1.9e-215 752.7 516 71.5
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 3.2e-215 751.9 487 74.7
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 4.2e-215 751.5 516 71.3
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 4.2e-215 751.5 514 72.0
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.2e-214 750.0 481 77.3
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 3.6e-214 748.4 515 71.1
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.4e-213 746.5 459 77.6
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 4.0e-213 745.0 514 71.4
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.2e-212 743.4 514 71.2
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.0e-212 742.7 503 73.6
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 1.3e-211 740.0 509 72.5
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 2.8e-211 738.8 459 76.7
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 4.8e-211 738.0 469 79.5
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 4.8e-211 738.0 480 75.0
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 1.1e-210 736.9 459 78.6
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 4.1e-210 734.9 509 73.7
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 2.3e-208 729.2 537 68.7
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 3.8e-208 728.4 453 77.7
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 7.2e-207 724.2 482 74.7
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 3.4e-204 715.3 461 77.2
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 3.7e-203 711.8 458 73.1
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 7.0e-202 707.6 459 73.4
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 4.5e-201 704.9 459 73.2
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 3.8e-200 701.8 420 80.0
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 5.6e-199 698.0 375 91.7
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 2.0e-196 689.5 459 71.9
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 2.9e-195 685.6 457 71.8
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.9e-195 685.6 472 73.5
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 3.7e-195 685.3 416 80.5
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 3.5e-193 678.7 459 72.8
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 4.6e-193 678.3 459 72.8
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 3.0e-192 675.6 375 88.3
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 8.6e-192 674.1 428 76.2
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 1.9e-191 672.9 449 78.4
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 3.4e-188 662.1 382 84.8
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 4.4e-188 661.8 382 84.8
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 4.9e-187 658.3 516 67.2
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 9.5e-183 644.0 453 67.3
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 1.8e-181 639.8 453 69.8
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 2.3e-181 639.4 459 70.2
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 5.1e-176 621.7 380 81.6
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 4.3e-175 618.6 754 47.9
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 2.9e-171 605.9 453 68.4
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 6.0e-169 598.2 425 69.9
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.0e-168 597.4 453 66.0
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 4.2e-162 575.5 325 86.5
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.7e-155 553.5 392 73.2
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 2.6e-116 423.3 353 62.6
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 2.1e-113 413.7 257 79.4
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.1e-111 407.9 235 83.4
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 2.6e-103 380.2 292 65.4
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 4.4e-95 352.8 247 73.3
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 7.7e-92 342.0 454 39.9
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 6.8e-88 328.9 201 79.1
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 5.7e-87 325.9 463 39.1
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 1.7e-86 324.3 454 38.5
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 2.0e-76 290.8 225 65.3
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 2.1e-68 264.2 400 42.0
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 6.2e-65 252.7 172 75.6
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 5.2e-64 249.6 135 91.1
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 1.3e-54 218.4 138 76.8
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 4.9e-54 216.5 165 67.9
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 3.5e-52 210.3 196 56.6
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 2.2e-46 191.0 124 77.4
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.6e-44 184.9 98 89.8
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 8.7e-43 179.1 249 42.6
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.1e-42 178.7 121 69.4
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 4.3e-42 176.8 131 61.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.1e-41 174.5 380 30.0
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 5.8e-39 166.4 90 87.8
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 5.3e-32 143.3 80 85.0
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 5.5e-29 133.3 80 73.8
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 7.1e-29 132.9 100 68.0
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 2.1e-28 131.3 93 71.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 2.1e-28 131.3 74 82.4
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 4.6e-28 130.2 100 67.0
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 1.0e-27 129.0 290 31.4
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 1.0e-14 85.9 55 65.5
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 6.1e-12 76.6 43 79.1
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 1.0e-11 75.9 47 72.3
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.8e-11 75.1 41 78.0
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 2.8e-09 67.8 118 41.5
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 6.9e-08 63.2 35 80.0
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 6.9e-08 63.2 38 78.9
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 5.9e-07 60.1 59 55.9


User provided reference genes

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