Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 0.0e+00 1089.7 546 100.0
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 3.0e-235 818.5 567 75.0
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.6e-233 812.8 547 76.6
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.1e-232 810.1 471 84.1
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 1.9e-229 799.3 495 79.8
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.6e-228 796.2 550 74.2
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 4.3e-226 788.1 512 77.1
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 9.6e-226 786.9 551 73.9
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 3.4e-223 778.5 576 69.6
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 3.8e-222 775.0 570 69.6
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 4.6e-220 768.1 521 73.1
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.0e-219 766.9 469 78.0
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 5.7e-218 761.1 472 76.1
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 5.7e-218 761.1 507 73.6
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 9.0e-216 753.8 539 69.9
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 7.6e-215 750.7 537 70.2
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 1.0e-214 750.4 547 71.1
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.5e-210 735.7 486 74.3
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.1e-208 730.3 471 73.2
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 1.8e-208 729.6 559 65.3
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 3.1e-208 728.8 480 69.8
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 9.1e-208 727.2 474 71.7
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 2.6e-207 725.7 555 65.2
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.4e-207 725.3 545 66.6
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.7e-206 723.0 557 65.5
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 2.2e-206 722.6 493 68.6
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.9e-206 722.2 462 76.0
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 8.5e-206 720.7 473 71.2
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 8.5e-206 720.7 471 72.2
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 1.4e-205 719.9 479 69.7
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 2.5e-205 719.2 475 72.0
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 2.5e-205 719.2 522 66.5
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 9.4e-205 717.2 516 68.0
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.2e-204 716.8 487 68.8
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.2e-204 716.8 480 69.0
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 6.1e-204 714.5 527 66.2
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 7.9e-204 714.1 525 65.5
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 1.0e-203 713.8 488 70.5
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 1.4e-203 713.4 547 65.6
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.8e-203 713.0 471 71.5
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.1e-202 710.3 472 72.0
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 4.4e-202 708.4 481 69.0
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 4.4e-202 708.4 548 64.6
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 7.4e-202 707.6 544 64.0
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 2.2e-201 706.1 478 69.9
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 3.7e-201 705.3 492 69.1
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 6.3e-201 704.5 540 63.9
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 1.1e-200 703.7 471 71.1
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 1.4e-200 703.4 476 70.6
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.8e-200 703.0 480 68.5
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 6.9e-200 701.0 553 65.8
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 1.5e-199 699.9 472 70.3
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 1.5e-199 699.9 472 70.3
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 3.4e-199 698.7 522 64.2
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 4.5e-199 698.4 540 64.8
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.0e-198 697.2 472 70.1
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 2.9e-198 695.7 472 69.9
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 3.8e-198 695.3 475 72.0
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 6.5e-198 694.5 547 63.1
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 6.5e-198 694.5 492 68.5
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 8.5e-198 694.1 544 63.6
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 8.5e-198 694.1 485 69.1
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 8.5e-198 694.1 471 69.6
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 1.4e-197 693.3 522 64.4
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 5.5e-197 691.4 472 69.5
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 5.5e-197 691.4 469 68.9
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 1.2e-196 690.3 472 69.3
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 1.6e-196 689.9 472 69.3
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 2.1e-196 689.5 552 62.0
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 4.7e-196 688.3 545 63.1
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.8e-195 686.4 540 63.5
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 3.0e-195 685.6 544 61.8
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 8.8e-195 684.1 489 68.9
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.3e-193 680.2 469 69.1
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 8.2e-193 677.6 541 64.5
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 3.1e-192 675.6 533 63.0
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 4.1e-192 675.2 508 65.0
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 4.1e-192 675.2 501 64.3
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 4.1e-192 675.2 556 62.2
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 7.0e-192 674.5 481 67.2
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 3.5e-191 672.2 573 59.9
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 4.5e-191 671.8 535 65.6
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 4.5e-191 671.8 517 64.8
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 3.8e-190 668.7 569 61.2
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 5.0e-190 668.3 544 61.8
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 1.1e-189 667.2 544 61.8
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.1e-189 667.2 471 68.8
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 2.1e-188 662.9 546 61.0
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.7e-188 662.5 485 67.2
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.7e-188 662.5 485 67.2
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 3.6e-188 662.1 510 63.5
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.0e-187 660.6 546 60.6
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 1.0e-187 660.6 519 62.6
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.4e-187 660.2 523 61.4
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.5e-186 656.8 479 66.8
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 3.3e-186 655.6 570 59.5
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 1.7e-185 653.3 471 66.9
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.2e-185 652.9 496 65.1
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 2.2e-185 652.9 459 68.0
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.8e-185 652.5 541 61.9
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 8.2e-185 651.0 572 60.1
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 2.4e-184 649.4 551 60.4
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.1e-184 649.0 458 67.0
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.0e-182 644.0 622 54.2
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.0e-182 644.0 462 65.8
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 1.7e-182 643.3 480 65.4
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 1.9e-181 639.8 543 60.8
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.2e-180 637.1 558 58.1
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 6.1e-180 634.8 540 60.9
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.2e-178 630.6 692 51.2
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.3e-177 624.4 485 64.1
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 4.0e-171 605.5 463 62.4
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.8e-168 596.7 522 59.0
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 4.9e-161 572.0 565 54.3
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 2.1e-156 556.6 363 70.8
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.6e-156 555.8 366 71.0
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 3.1e-155 552.7 556 53.4
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 1.3e-150 537.3 391 65.2
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 2.0e-146 523.5 463 55.1
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 9.2e-144 514.6 553 49.0
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 1.7e-142 510.4 471 53.7
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 1.9e-141 506.9 362 66.3
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.4e-139 500.7 487 53.6
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.4e-136 490.7 487 50.5
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.9e-133 480.3 361 64.0
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.3e-133 479.2 492 51.6
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 4.4e-130 469.2 381 61.7
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 2.2e-129 466.8 382 63.4
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 1.7e-126 457.2 326 64.7
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 7.6e-122 441.8 288 70.8
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 1.3e-116 424.5 349 63.6
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 1.1e-109 401.4 279 70.3
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 3.8e-105 386.3 488 43.6
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 8.7e-102 375.2 475 43.6
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 4.3e-101 372.9 243 70.0
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 4.3e-101 372.9 219 79.5
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 2.2e-92 344.0 217 71.9
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 1.0e-89 335.1 229 69.9
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 4.2e-88 329.7 212 69.3
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 5.5e-88 329.3 294 58.2
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 4.7e-87 326.2 302 55.0
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 6.1e-87 325.9 299 57.2
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.7e-86 322.4 254 63.8
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 1.1e-85 321.6 214 72.0
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 1.1e-85 321.6 456 39.0
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 1.6e-74 284.6 291 49.8
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 5.0e-73 279.6 187 72.7
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 1.4e-70 271.6 466 35.8
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 5.0e-65 253.1 170 72.4
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.8e-62 244.6 271 50.2
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 4.7e-55 219.9 460 32.6
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.3e-54 217.6 184 61.4
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 6.8e-54 216.1 161 62.1
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.2e-50 205.3 283 42.4
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.9e-48 198.0 147 66.7
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.0e-42 177.9 125 61.6
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 6.2e-39 166.4 114 64.9
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.2e-37 162.2 137 56.2
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 2.9e-36 157.5 124 56.5
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 1.5e-32 145.2 152 50.7
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 2.8e-31 141.0 324 34.0
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 4.7e-31 140.2 88 71.6
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.4e-30 138.7 80 78.8
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 5.2e-30 136.7 358 31.6
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.6e-29 134.4 76 82.9
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 3.4e-29 134.0 90 64.4
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 3.4e-29 134.0 81 74.1
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 3.7e-28 130.6 102 66.7
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 3.6e-23 114.0 173 43.9
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 4.7e-23 113.6 84 61.9
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.1e-22 112.5 64 79.7
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.4e-22 111.3 77 62.3
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 5.8e-21 106.7 63 76.2
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 2.2e-20 104.8 109 51.4
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 2.2e-20 104.8 80 66.2
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 1.1e-19 102.4 77 63.6
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 1.4e-19 102.1 64 70.3
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 2.3e-17 94.7 80 52.5
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 6.6e-17 93.2 64 67.2
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 1.5e-16 92.0 60 65.0
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.8e-14 85.1 172 34.9
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.6e-10 70.5 111 39.6
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 7.8e-10 69.7 48 68.8
Medtr6g046320 Medicago truncatula HOM05D000007 ORTHO05D000521 6.9e-06 56.6 43 55.8
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 9.0e-06 56.2 51 45.1


User provided reference genes

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