Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 1.1e-53 213.0 104 100.0
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 1.1e-53 213.0 104 100.0
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.1e-53 213.0 104 100.0
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.1e-53 213.0 104 100.0
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.1e-53 213.0 104 100.0
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.1e-53 213.0 104 100.0
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 1.1e-53 213.0 104 100.0
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 1.1e-53 213.0 104 100.0
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 1.1e-53 213.0 104 100.0
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 1.1e-53 213.0 104 100.0
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 1.1e-53 213.0 104 100.0
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 1.1e-53 213.0 104 100.0
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 2.4e-53 211.8 104 99.0
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 2.4e-53 211.8 104 99.0
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 2.4e-53 211.8 104 99.0
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 3.2e-53 211.5 103 99.0
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 4.2e-53 211.1 104 99.0
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 4.2e-53 211.1 104 99.0
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 4.2e-53 211.1 103 100.0
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 5.4e-53 210.7 104 99.0
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 5.4e-53 210.7 104 99.0
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 5.4e-53 210.7 104 99.0
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 5.4e-53 210.7 104 98.1
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 7.1e-53 210.3 104 98.1
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 7.1e-53 210.3 104 98.1
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 7.1e-53 210.3 104 97.1
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 7.1e-53 210.3 104 97.1
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 7.1e-53 210.3 104 97.1
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 9.3e-53 209.9 104 98.1
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 9.3e-53 209.9 104 98.1
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 9.3e-53 209.9 104 98.1
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 9.3e-53 209.9 104 98.1
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 9.3e-53 209.9 104 98.1
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 9.3e-53 209.9 104 99.0
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 9.3e-53 209.9 104 98.1
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 9.3e-53 209.9 104 98.1
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 9.3e-53 209.9 104 98.1
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 9.3e-53 209.9 104 98.1
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 9.3e-53 209.9 103 99.0
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 9.3e-53 209.9 104 98.1
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 9.3e-53 209.9 103 99.0
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 9.3e-53 209.9 104 98.1
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 9.3e-53 209.9 104 98.1
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 9.3e-53 209.9 104 98.1
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 1.2e-52 209.5 104 99.0
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.2e-52 209.5 103 99.0
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.2e-52 209.5 103 99.0
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 1.2e-52 209.5 103 99.0
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 1.2e-52 209.5 104 98.1
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 1.2e-52 209.5 104 98.1
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 1.2e-52 209.5 104 96.2
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 1.6e-52 209.1 103 99.0
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 98.1
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 97.1
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 1.6e-52 209.1 104 98.1
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 2.1e-52 208.8 104 96.2
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 2.1e-52 208.8 104 96.2
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 2.1e-52 208.8 104 96.2
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 2.1e-52 208.8 104 97.1
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 2.7e-52 208.4 104 97.1
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 3.5e-52 208.0 104 96.2
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 3.5e-52 208.0 103 98.1
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 3.5e-52 208.0 104 97.1
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 3.5e-52 208.0 104 97.1
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 3.5e-52 208.0 104 97.1
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 3.5e-52 208.0 104 97.1
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 3.5e-52 208.0 104 97.1
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 3.5e-52 208.0 103 98.1
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 4.6e-52 207.6 103 97.1
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 4.6e-52 207.6 104 97.1
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 6.0e-52 207.2 104 96.2
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 7.8e-52 206.8 104 96.2
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 1.0e-51 206.5 104 96.2
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 1.0e-51 206.5 103 98.1
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 2.3e-51 205.3 104 96.2
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 2.3e-51 205.3 103 97.1
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 2.3e-51 205.3 103 97.1
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 2.3e-51 205.3 103 97.1
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 2.3e-51 205.3 103 97.1
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 2.3e-51 205.3 104 95.2
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 3.0e-51 204.9 104 95.2
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 3.9e-51 204.5 100 98.0
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 5.1e-51 204.1 104 96.2
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 5.1e-51 204.1 104 96.2
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 5.1e-51 204.1 104 96.2
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 5.1e-51 204.1 104 96.2
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 5.1e-51 204.1 104 96.2
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 5.1e-51 204.1 103 97.1
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 5.1e-51 204.1 103 97.1
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 5.1e-51 204.1 103 97.1
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 5.1e-51 204.1 104 96.2
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 6.6e-51 203.8 104 96.2
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 6.6e-51 203.8 104 95.2
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 6.6e-51 203.8 104 94.2
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 6.6e-51 203.8 104 95.2
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 8.7e-51 203.4 104 94.2
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.1e-50 203.0 103 96.1
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.1e-50 203.0 103 96.1
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 1.5e-50 202.6 104 93.3
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 1.5e-50 202.6 104 94.2
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 1.5e-50 202.6 102 95.1
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 1.5e-50 202.6 103 94.2
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 2.5e-50 201.8 101 98.0
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 2.5e-50 201.8 104 94.2
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 4.3e-50 201.1 101 97.0
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 1.3e-49 199.5 103 95.1
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 1.3e-49 199.5 102 93.1
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.6e-49 199.1 101 97.0
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 2.8e-49 198.4 104 89.4
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 2.8e-49 198.4 104 89.4
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 3.6e-49 198.0 104 89.4
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 2.4e-48 195.3 104 90.4
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 6.9e-48 193.7 104 90.4
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 9.0e-48 193.4 103 89.3
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 2.6e-47 191.8 103 93.2
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 4.4e-47 191.0 100 91.0
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 4.9e-46 187.6 100 89.0
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 4.3e-42 174.5 103 79.6
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 2.1e-41 172.2 100 80.0
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 6.2e-41 170.6 102 79.4
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 6.2e-41 170.6 102 79.4
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.4e-40 169.5 100 80.0
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 3.1e-40 168.3 99 82.8
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 1.9e-37 159.1 101 75.2
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 1.2e-36 156.4 101 70.3
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 6.9e-32 140.6 102 63.7
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 3.8e-30 134.8 99 64.6
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 3.5e-28 128.3 62 93.5
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.2e-23 113.2 100 52.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 4.2e-21 104.8 100 50.0
vmacro17432 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 1.7e-06 56.2 33 78.8
PGR142G2751 Punica granatum HOM05D001946 ORTHO05D002111 8.5e-06 53.9 99 32.3


User provided reference genes

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