Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P123T20 Lonicera japonica HOM05D000060 ORTHO05D003150 7.5e-23 109.8 60 100.0
vmacro14631 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 1.2e-15 85.9 57 78.9
Rhsim01G0241800 Rhododendron simsii HOM05D000060 ORTHO05D003150 3.4e-15 84.3 53 83.0
CSS0003586 Camellia sinensis var. sinensis HOM05D000060 ORTHO05D003150 2.2e-14 81.6 60 78.3
Cc01_g15120 Coffea canephora HOM05D000060 ORTHO05D003150 3.7e-14 80.9 61 73.8
TAR633G1591 Trochodendron aralioides HOM05D000060 ORTHO05D003150 1.9e-13 78.6 53 77.4
Thecc.10G174800 Theobroma cacao HOM05D000060 ORTHO05D003150 5.4e-13 77.0 60 71.7
Migut.N00746 Erythranthe guttata HOM05D000060 ORTHO05D003150 9.2e-13 76.3 60 68.3
MBI15_g22884_MAGBIO Magnolia biondii HOM05D000060 ORTHO05D003150 1.6e-12 75.5 53 73.6
Nn2g13333 Nelumbo nucifera HOM05D000060 ORTHO05D003150 1.6e-12 75.5 54 72.2
Manes.10G005700 Manihot esculenta HOM05D000060 ORTHO05D003150 2.1e-12 75.1 61 70.5
Peaxi162Scf01078g00001 Petunia axillaris HOM05D000060 ORTHO05D003150 2.1e-12 75.1 60 66.7
SalBow2G1162 Salvia bowleyana HOM05D000060 ORTHO05D003150 2.7e-12 74.7 60 68.3
Manes.07G138500 Manihot esculenta HOM05D000060 ORTHO05D003150 3.5e-12 74.3 53 77.4
TAR629G1310 Trochodendron aralioides HOM05D000060 ORTHO05D003150 3.5e-12 74.3 60 63.3
TAR636G0477 Trochodendron aralioides HOM05D000060 ORTHO05D003150 3.5e-12 74.3 60 63.3
Actinidia11612 Actinidia chinensis HOM05D000060 ORTHO05D003150 6.0e-12 73.6 62 67.7
Oeu024869.1 Olea europaea HOM05D000060 ORTHO05D003150 6.0e-12 73.6 61 67.2
GSVIVG01024592001 Vitis vinifera HOM05D000060 ORTHO05D003150 7.8e-12 73.2 60 70.0
Haze_24444 Corylus avellana HOM05D000060 ORTHO05D003150 1.0e-11 72.8 57 70.2
Duzib114G0815 Durio zibethinus HOM05D000060 ORTHO05D003150 1.0e-11 72.8 57 70.2
Potri.013G156200 Populus trichocarpa HOM05D000060 ORTHO05D003150 1.0e-11 72.8 56 73.2
GSVIVG01032714001 Vitis vinifera HOM05D000060 ORTHO05D003150 1.3e-11 72.4 57 71.9
Potri.013G081200 Populus trichocarpa HOM05D000060 ORTHO05D003150 2.3e-11 71.6 63 66.7
Lsat_1_v5_gn_5_175300 Lactuca sativa HOM05D000060 ORTHO05D003150 3.9e-11 70.9 65 64.6
Thecc.09G361300 Theobroma cacao HOM05D000060 ORTHO05D003150 3.9e-11 70.9 65 61.5
VMungo0647G0787 Vigna mungo HOM05D000060 ORTHO05D003150 3.9e-11 70.9 58 70.7
Oeu011362.1 Olea europaea HOM05D000060 ORTHO05D003150 5.1e-11 70.5 63 63.5
Oeu058658.1 Olea europaea HOM05D000060 ORTHO05D003150 5.1e-11 70.5 53 73.6
Glyma.14G202300 Glycine max HOM05D000060 ORTHO05D003150 6.6e-11 70.1 59 71.2
Phvul.008G249100 Phaseolus vulgaris HOM05D000060 ORTHO05D003150 6.6e-11 70.1 58 70.7
Sabra13G0126100 Salix brachista HOM05D000060 ORTHO05D003150 6.6e-11 70.1 55 70.9
COL.COLO4_03889 Corchorus olitorius HOM05D000060 ORTHO05D003150 8.6e-11 69.7 53 71.7
Prupe.2G261000 Prunus persica HOM05D000060 ORTHO05D003150 8.6e-11 69.7 58 72.4
MD01G1162900 Malus domestica HOM05D000060 ORTHO05D003150 1.5e-10 68.9 64 67.2
Duzib106G0825 Durio zibethinus HOM05D000060 ORTHO05D003150 1.9e-10 68.6 57 68.4
MD07G1231000 Malus domestica HOM05D000060 ORTHO05D003150 2.5e-10 68.2 61 68.9
Lalb_Chr10g0103721 Lupinus albus HOM05D000060 ORTHO05D003150 3.3e-10 67.8 48 79.2
QL01p025285 Quercus lobata HOM05D000060 ORTHO05D003150 3.3e-10 67.8 53 67.9
Dinv28712 Davidia involucrata HOM05D000060 ORTHO05D003150 4.3e-10 67.4 61 70.5
Glyma.04G220500 Glycine max HOM05D000060 ORTHO05D003150 4.3e-10 67.4 58 69.0
LjContig00141g0006168 Lotus japonicus HOM05D000060 ORTHO05D003150 4.3e-10 67.4 60 68.3
Potri.019G127300 Populus trichocarpa HOM05D000060 ORTHO05D003150 4.3e-10 67.4 55 69.1
Sabra19G0125400 Salix brachista HOM05D000060 ORTHO05D003150 4.3e-10 67.4 53 71.7
Sabra19G0129900 Salix brachista HOM05D000060 ORTHO05D003150 4.3e-10 67.4 53 71.7
CSS0032722 Camellia sinensis var. sinensis HOM05D000060 ORTHO05D003150 5.6e-10 67.0 50 74.0
Gohir.D13G005300 Gossypium hirsutum HOM05D000060 ORTHO05D003150 5.6e-10 67.0 60 65.0
Duzib128G1145 Durio zibethinus HOM05D000060 ORTHO05D003150 7.3e-10 66.6 47 74.5
Lj8A57T60 Lonicera japonica HOM05D000060 ORTHO05D003150 7.3e-10 66.6 53 69.8
Cfa011805 Carpinus fangiana HOM05D000060 ORTHO05D003150 9.5e-10 66.2 53 67.9
Gorai.013G005900 Gossypium raimondii HOM05D000060 ORTHO05D003150 9.5e-10 66.2 60 63.3
TAR623G1237 Trochodendron aralioides HOM05D000060 ORTHO05D003150 9.5e-10 66.2 62 59.7
Glyma.02G234600 Glycine max HOM05D000060 ORTHO05D003150 1.6e-09 65.5 59 66.1
Actinidia07805 Actinidia chinensis HOM05D000060 ORTHO05D003150 2.1e-09 65.1 53 67.9
EL10Ac7g15861 Beta vulgaris HOM05D000060 ORTHO05D003150 2.8e-09 64.7 42 76.2
Eucgr.G03121 Eucalyptus grandis HOM05D000060 ORTHO05D003150 2.8e-09 64.7 57 63.2
Glyma.06G145400 Glycine max HOM05D000060 ORTHO05D003150 2.8e-09 64.7 59 67.8
PGR142G0950 Punica granatum HOM05D000060 ORTHO05D003150 2.8e-09 64.7 49 73.5
CiPaw.01G304300 Carya illinoinensis HOM05D000060 ORTHO05D003150 3.6e-09 64.3 58 63.8
Gohir.A13G005600 Gossypium hirsutum HOM05D000060 ORTHO05D003150 3.6e-09 64.3 60 61.7
Gohir.D05G281500 Gossypium hirsutum HOM05D000060 ORTHO05D003150 3.6e-09 64.3 53 67.9
Gorai.009G295000 Gossypium raimondii HOM05D000060 ORTHO05D003150 3.6e-09 64.3 53 67.9
Cc02_g05630 Coffea canephora HOM05D000060 ORTHO05D003150 4.7e-09 63.9 63 55.6
Dinv12262 Davidia involucrata HOM05D000060 ORTHO05D003150 4.7e-09 63.9 44 86.4
TWI73G1083 Tripterygium wilfordii HOM05D000060 ORTHO05D003150 4.7e-09 63.9 55 70.9
CiPaw.02G197900 Carya illinoinensis HOM05D000060 ORTHO05D003150 8.1e-09 63.2 44 79.5
Ciclev10032684m.g Citrus clementina HOM05D000060 ORTHO05D003150 8.1e-09 63.2 57 63.2
ECA248G3276 Erigeron canadensis HOM05D002277 ORTHO05D001770 8.1e-09 63.2 66 60.6
Gohir.A05G401900 Gossypium hirsutum HOM05D000060 ORTHO05D003150 8.1e-09 63.2 53 67.9
TWI09G0760 Tripterygium wilfordii HOM05D000060 ORTHO05D003150 8.1e-09 63.2 62 61.3
Gohir.A05G279866 Gossypium hirsutum HOM05D000060 ORTHO05D003150 1.1e-08 62.8 51 68.6
Hma1.2p1_1240F.1_g269560 Hydrangea macrophylla HOM05D000060 ORTHO05D003150 1.1e-08 62.8 53 64.2
Haze_17332 Corylus avellana HOM05D000060 ORTHO05D003150 1.4e-08 62.4 42 81.0
Gohir.D04G013600 Gossypium hirsutum HOM05D000060 ORTHO05D003150 1.4e-08 62.4 53 66.0
Gorai.012G015900 Gossypium raimondii HOM05D000060 ORTHO05D003150 1.4e-08 62.4 53 66.0
Dinv10549 Davidia involucrata HOM05D000060 ORTHO05D003150 1.8e-08 62.0 48 70.8
QL08p064457 Quercus lobata HOM05D000060 ORTHO05D003150 1.8e-08 62.0 42 81.0
Nitab4.5_0002759g0030 Nicotiana tabacum HOM05D000060 ORTHO05D003150 2.3e-08 61.6 60 56.7
Peaxi162Scf00390g00043 Petunia axillaris HOM05D000060 ORTHO05D003150 2.3e-08 61.6 60 58.3
RcHm_v2.0_Chr1g0371641 Rosa chinensis HOM05D000060 ORTHO05D003150 2.3e-08 61.6 33 93.9
SalBow3G0534 Salvia bowleyana HOM05D000060 ORTHO05D003150 2.3e-08 61.6 53 64.2
Psat2g051960 Pisum sativum HOM05D000060 ORTHO05D003150 3.1e-08 61.2 40 77.5
MSTRG.12699 Avicennia marina HOM05D000060 ORTHO05D003150 4.0e-08 60.8 60 58.3
SGA_v2.0_scaffold77G25371 Striga asiatica HOM05D000060 ORTHO05D003150 4.0e-08 60.8 40 75.0
THA.LOC104824353 Tarenaya hassleriana HOM05D000060 ORTHO05D003150 4.0e-08 60.8 53 64.2
A05p01730 Brassica napus HOM05D000060 ORTHO05D003150 5.2e-08 60.5 57 56.1
C04p02000 Brassica napus HOM05D000060 ORTHO05D003150 5.2e-08 60.5 57 56.1
BolC4t21850H Brassica oleracea HOM05D000060 ORTHO05D003150 5.2e-08 60.5 57 56.1
BraA05t19170Z Brassica rapa HOM05D000060 ORTHO05D003150 5.2e-08 60.5 57 56.1
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 5.2e-08 60.5 57 54.4
ATR0681G013 Amborella trichopoda HOM05D000060 ORTHO05D003150 6.8e-08 60.1 48 62.5
Ciclev10002348m.g Citrus clementina HOM05D000060 ORTHO05D003150 6.8e-08 60.1 53 66.0
FAN01G0158 Fragaria x ananassa HOM05D000060 ORTHO05D003150 6.8e-08 60.1 33 90.9
FAN03G0605 Fragaria x ananassa HOM05D000060 ORTHO05D003150 6.8e-08 60.1 33 90.9
FAN10G2650 Fragaria x ananassa HOM05D000060 ORTHO05D003150 6.8e-08 60.1 33 90.9
BcaC02g12717 Brassica carinata HOM05D000060 ORTHO05D003150 8.9e-08 59.7 57 56.1
CAN.G1095.31 Capsicum annuum HOM05D000060 ORTHO05D003150 8.9e-08 59.7 60 55.0
Lsat_1_v5_gn_2_126141 Lactuca sativa HOM05D000060 ORTHO05D003150 8.9e-08 59.7 56 62.5
Lj1g0024346 Lotus japonicus HOM05D000060 ORTHO05D003150 8.9e-08 59.7 54 63.0
Nitab4.5_0011015g0010 Nicotiana tabacum HOM05D000060 ORTHO05D003150 8.9e-08 59.7 60 55.0
CSS0044294 Camellia sinensis var. sinensis HOM05D000060 ORTHO05D003150 1.2e-07 59.3 39 74.4
Duzib168G1602 Durio zibethinus HOM05D000060 ORTHO05D003150 1.2e-07 59.3 56 62.5
Lalb_Chr08g0238921 Lupinus albus HOM05D000060 ORTHO05D003150 1.2e-07 59.3 60 58.3
VMungo1309G1955 Vigna mungo HOM05D000060 ORTHO05D003150 1.2e-07 59.3 54 64.8
Gorai.003G151800 Gossypium raimondii HOM05D000060 ORTHO05D003150 1.5e-07 58.9 60 61.7
FvH4_7g25580 Fragaria vesca HOM05D000060 ORTHO05D003150 2.0e-07 58.5 33 87.9
FAN06G2325 Fragaria x ananassa HOM05D000060 ORTHO05D003150 2.0e-07 58.5 33 87.9
Gohir.A03G023966 Gossypium hirsutum HOM05D000060 ORTHO05D003150 2.6e-07 58.2 62 59.7
PGSC0003DMG400030461 Solanum tuberosum HOM05D000060 ORTHO05D003150 2.6e-07 58.2 60 53.3
Gohir.D03G144600 Gossypium hirsutum HOM05D000060 ORTHO05D003150 3.4e-07 57.8 60 60.0
Lj1P964T41 Lonicera japonica HOM05D000060 ORTHO05D003150 3.4e-07 57.8 52 61.5
MD11G1061600 Malus domestica HOM05D000060 ORTHO05D003150 3.4e-07 57.8 56 58.9
SGA_v2.0_scaffold60G20918 Striga asiatica HOM05D000060 ORTHO05D003150 3.4e-07 57.8 58 55.2
Cpa.g.sc19.92 Carica papaya HOM05D000060 ORTHO05D003150 4.4e-07 57.4 41 75.6
Solyc06g082430.2 Solanum lycopersicum HOM05D000060 ORTHO05D003150 4.4e-07 57.4 60 53.3
Atru.chr12.147 Acer truncatum HOM05D000060 ORTHO05D003150 5.8e-07 57.0 32 90.6
arahy.Tifrunner.gnm1.ann1.FQ0VZJ Arachis hypogaea HOM05D000060 ORTHO05D003150 5.8e-07 57.0 40 70.0
arahy.Tifrunner.gnm1.ann1.JAZ4E6 Arachis hypogaea HOM05D000060 ORTHO05D003150 5.8e-07 57.0 40 70.0
MD03G1059400 Malus domestica HOM05D000060 ORTHO05D003150 5.8e-07 57.0 63 55.6
Lalb_Chr23g0272321 Lupinus albus HOM05D000060 ORTHO05D003150 7.6e-07 56.6 48 66.7
Phvul.009G140600 Phaseolus vulgaris HOM05D000060 ORTHO05D003150 7.6e-07 56.6 55 63.6
Psat5g066760 Pisum sativum HOM05D000060 ORTHO05D003150 7.6e-07 56.6 34 85.3
Sopen06g033810 Solanum pennellii HOM05D000060 ORTHO05D003150 7.6e-07 56.6 60 51.7
TPR.G25734 Trifolium pratense HOM05D000060 ORTHO05D003150 7.6e-07 56.6 55 56.4
Aa31LG5G19060 Aethionema arabicum HOM05D000060 ORTHO05D003150 9.9e-07 56.2 68 54.4
Ah.15g096480 Amaranthus hybridus HOM05D000060 ORTHO05D003150 9.9e-07 56.2 40 67.5
EL10Ac2g04271 Beta vulgaris HOM05D000060 ORTHO05D003150 9.9e-07 56.2 67 58.2
Prupe.6G043900 Prunus persica HOM05D000060 ORTHO05D003150 9.9e-07 56.2 56 53.6
SGA_v2.0_scaffold4623G54511 Striga asiatica HOM05D000060 ORTHO05D003150 9.9e-07 56.2 60 58.3
CARHR135580 Cardamine hirsuta HOM05D000060 ORTHO05D003150 1.3e-06 55.8 64 51.6
HanXRQChr14g0460361 Helianthus annuus HOM05D000060 ORTHO05D003150 1.3e-06 55.8 54 63.0
Medtr3g094690 Medicago truncatula HOM05D000060 ORTHO05D003150 1.3e-06 55.8 66 54.5
Medtr5g075020 Medicago truncatula HOM05D000060 ORTHO05D003150 1.3e-06 55.8 58 56.9
PSO339G6257 Papaver somniferum HOM05D000060 ORTHO05D003150 1.3e-06 55.8 60 53.3
PSO384G0145 Papaver somniferum HOM05D000060 ORTHO05D003150 1.3e-06 55.8 60 53.3
Eucgr.B04019 Eucalyptus grandis HOM05D000060 ORTHO05D003150 1.7e-06 55.5 64 46.9
Ah.08g215440 Amaranthus hybridus HOM05D000060 ORTHO05D004654 2.2e-06 55.1 42 59.5
CiPaw.13G066000 Carya illinoinensis HOM05D000060 ORTHO05D003150 2.2e-06 55.1 58 55.2
TWI09G1453 Tripterygium wilfordii HOM05D000060 ORTHO05D003150 2.9e-06 54.7 62 54.8
TWI31G0139 Tripterygium wilfordii HOM05D000060 ORTHO05D003150 2.9e-06 54.7 69 52.2
AT2G40470 Arabidopsis thaliana HOM05D000060 ORTHO05D003150 3.7e-06 54.3 60 53.3
Hund18967 Selenicereus undatus HOM05D000060 ORTHO05D003150 3.7e-06 54.3 38 71.1
Sopen06g002330 Solanum pennellii HOM05D000060 ORTHO05D003150 3.7e-06 54.3 61 57.4
PGSC0003DMG400029080 Solanum tuberosum HOM05D000060 ORTHO05D003150 3.7e-06 54.3 58 55.2
CANSAT54G1438 Cannabis sativa HOM05D000060 ORTHO05D003150 4.9e-06 53.9 35 74.3
Sp4g22810 Schrenkiella parvula HOM05D000060 ORTHO05D003150 4.9e-06 53.9 56 55.4
TPR.G23731 Trifolium pratense HOM05D000060 ORTHO05D003150 4.9e-06 53.9 34 82.4
AL4G38310 Arabidopsis lyrata HOM05D000060 ORTHO05D003150 6.4e-06 53.5 56 55.4
MSTRG.8903 Avicennia marina HOM05D000060 ORTHO05D003150 6.4e-06 53.5 32 84.4
Carub.0004s2272 Capsella rubella HOM05D000060 ORTHO05D003150 6.4e-06 53.5 56 53.6
Thhalv10017905m.g Eutrema salsugineum HOM05D000060 ORTHO05D003150 8.4e-06 53.1 67 49.3
FvH4_3g40200 Fragaria vesca HOM05D000060 ORTHO05D003150 8.4e-06 53.1 77 50.6
LjContig00357g0011052 Lotus japonicus HOM05D000060 ORTHO05D003150 8.4e-06 53.1 57 54.4
Solyc06g007390.4 Solanum lycopersicum HOM05D000060 ORTHO05D003150 8.4e-06 53.1 58 56.9


User provided reference genes

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