Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 9.7e-196 686.8 389 100.0
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.9e-122 443.4 400 65.5
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 6.6e-120 434.9 414 69.1
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.4e-117 426.4 425 63.1
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 5.8e-116 421.8 400 64.2
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 7.6e-116 421.4 394 63.7
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 1.4e-114 417.2 408 62.3
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 5.4e-114 415.2 410 63.7
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 7.1e-114 414.8 397 67.3
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.1e-113 413.3 422 64.0
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 4.6e-113 412.1 408 63.5
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 2.3e-112 409.8 400 63.2
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 3.9e-112 409.1 415 63.9
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.9e-112 409.1 425 62.4
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.3e-110 404.1 413 63.9
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 4.8e-110 402.1 418 63.9
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 6.2e-110 401.7 399 64.9
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 1.8e-109 400.2 403 61.5
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 1.8e-109 400.2 437 60.6
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 1.8e-109 400.2 405 57.8
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 2.2e-107 393.3 437 61.6
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 2.9e-107 392.9 429 60.8
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 6.0e-105 385.2 449 53.0
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 1.0e-104 384.4 434 55.3
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.3e-104 384.0 393 57.8
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 1.1e-103 380.9 431 56.1
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 1.1e-103 380.9 426 56.1
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 1.5e-103 380.6 412 58.3
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 4.3e-103 379.0 401 57.4
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 4.3e-103 379.0 426 55.2
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 2.8e-102 376.3 430 62.1
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 1.8e-101 373.6 405 58.0
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 2.4e-101 373.2 440 54.3
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 3.1e-101 372.9 416 57.0
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 4.0e-101 372.5 414 57.2
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 5.3e-101 372.1 402 60.9
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 1.5e-100 370.5 404 56.4
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 9.9e-100 367.9 403 57.3
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 2.2e-99 366.7 402 62.2
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 2.9e-99 366.3 410 58.3
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.9e-99 366.3 443 56.4
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 3.8e-99 365.9 424 54.5
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 1.4e-98 364.0 449 53.5
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 1.4e-98 364.0 407 57.0
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 3.2e-98 362.8 424 54.2
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 3.2e-98 362.8 424 54.0
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 7.1e-98 361.7 428 58.9
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.2e-97 360.9 443 52.4
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 1.0e-96 357.8 427 60.2
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 1.8e-96 357.1 405 55.8
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 2.3e-96 356.7 444 53.2
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 3.3e-95 352.8 409 58.9
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 2.8e-94 349.7 444 52.0
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.8e-94 349.7 444 52.9
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 2.8e-94 349.7 408 58.3
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 6.2e-94 348.6 444 54.1
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.4e-93 347.4 447 51.9
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 1.8e-93 347.1 408 58.3
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 6.9e-93 345.1 405 55.8
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.6e-92 343.2 455 55.6
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 4.5e-92 342.4 442 50.9
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 1.0e-91 341.3 419 53.2
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.3e-91 340.9 436 51.6
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 6.5e-91 338.6 424 55.0
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 6.5e-91 338.6 456 55.0
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 8.4e-91 338.2 438 51.6
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 1.9e-90 337.0 427 51.8
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 5.5e-90 335.5 451 55.0
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 1.6e-89 334.0 447 54.8
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 2.3e-88 330.1 390 54.9
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 8.7e-88 328.2 423 57.2
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 3.3e-87 326.2 408 52.5
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 5.7e-87 325.5 406 56.2
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 7.4e-87 325.1 389 52.4
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 9.6e-87 324.7 409 55.7
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 1.6e-86 323.9 395 57.7
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 3.7e-86 322.8 374 56.1
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 4.1e-85 319.3 393 52.2
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.2e-84 317.8 402 51.0
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 4.5e-84 315.8 400 52.0
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 1.0e-83 314.7 400 51.5
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 1.9e-82 310.5 475 52.6
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 1.9e-82 310.5 465 49.9
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.2e-82 309.7 386 53.9
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 4.2e-82 309.3 417 48.9
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 3.5e-81 306.2 421 49.4
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 3.5e-81 306.2 444 50.5
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 7.9e-81 305.1 409 50.6
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 3.9e-80 302.8 398 54.0
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 5.1e-80 302.4 398 54.3
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 5.1e-80 302.4 428 52.3
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 8.7e-80 301.6 451 46.6
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 8.7e-80 301.6 476 50.2
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 7.4e-79 298.5 398 53.3
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.4e-77 294.3 402 50.5
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 2.4e-77 293.5 404 55.0
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 2.0e-76 290.4 417 48.2
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 3.8e-75 286.2 404 52.2
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.1e-74 284.6 437 46.5
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 4.2e-74 282.7 404 49.3
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 3.6e-73 279.6 436 48.6
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 1.8e-72 277.3 408 51.5
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 3.0e-72 276.6 450 43.8
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 5.1e-72 275.8 408 51.5
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 1.5e-71 274.2 387 47.5
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.7e-70 270.8 408 45.3
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 2.6e-68 263.5 405 44.0
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 5.9e-68 262.3 329 50.8
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 1.7e-67 260.8 455 48.8
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 2.2e-67 260.4 472 46.8
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 3.6e-65 253.1 375 52.0
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 8.8e-64 248.4 378 46.8
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 5.7e-63 245.7 410 47.8
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 5.7e-63 245.7 160 78.8
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 1.7e-59 234.2 474 39.2
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 3.3e-55 219.9 133 82.0
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 5.7e-55 219.2 434 38.9
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.0e-52 210.7 163 69.3
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 3.8e-51 206.5 262 50.4
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 6.8e-48 195.7 449 41.2
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 1.5e-47 194.5 436 45.4
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 3.4e-47 193.4 375 38.4
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 2.5e-42 177.2 399 42.9
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.7e-35 154.5 92 81.5
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 3.8e-35 153.3 411 34.3
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.4e-31 139.8 271 43.2
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.3e-27 128.3 393 33.8
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 8.6e-27 125.6 133 54.9
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.1e-26 125.2 323 36.8
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 1.6e-25 121.3 151 52.3
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 2.3e-24 117.5 139 46.8
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 3.4e-23 113.6 164 45.1
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.4e-23 113.2 97 63.9
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 1.3e-19 101.7 97 58.8
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 1.6e-17 94.7 119 42.9
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.8e-17 94.0 117 53.0
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 2.2e-14 84.3 99 48.5
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 2.2e-14 84.3 99 48.5
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 3.2e-13 80.5 47 78.7
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 7.1e-13 79.3 49 79.6
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 5.1e-11 73.2 93 51.6
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 5.1e-11 73.2 93 51.6
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 8.6e-11 72.4 93 51.6


User provided reference genes

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