Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 0.0e+00 1501.5 924 100.0
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 1.3e-219 767.3 992 58.0
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 1.1e-189 667.9 981 56.5
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 2.3e-187 660.2 938 56.7
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 2.5e-186 656.8 944 50.4
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 1.1e-176 624.8 994 53.0
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 5.3e-176 622.5 945 49.9
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 4.2e-173 612.8 958 53.1
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 1.0e-171 608.2 1033 51.7
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 8.2e-169 598.6 952 48.0
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 1.4e-168 597.8 1046 51.4
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 4.1e-168 596.3 681 55.9
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 1.2e-167 594.7 994 52.1
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 2.0e-167 594.0 668 56.6
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 2.6e-167 593.6 945 52.9
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 2.6e-167 593.6 966 47.2
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 1.3e-166 591.3 691 55.0
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 1.1e-165 588.2 979 45.1
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 3.2e-165 586.6 947 50.2
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 3.2e-165 586.6 979 52.1
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 6.1e-164 582.4 1006 52.3
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 2.3e-163 580.5 950 50.3
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 4.8e-161 572.8 951 49.0
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 2.2e-158 563.9 962 47.9
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 2.9e-158 563.5 671 52.9
CSS0048002 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 6.1e-156 555.8 840 56.5
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 3.1e-152 543.5 719 50.1
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 4.5e-151 539.7 963 51.4
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 2.9e-150 537.0 669 50.5
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 1.5e-149 534.6 669 50.4
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 1.5e-149 534.6 708 50.0
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 4.2e-149 533.1 970 48.1
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 9.4e-149 531.9 760 48.0
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 8.0e-148 528.9 784 47.6
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 8.0e-148 528.9 697 49.9
Oeu041836.1 Olea europaea HOM05D006512 ORTHO05D008027 6.8e-147 525.8 828 52.3
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 2.0e-146 524.2 939 51.8
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 9.8e-146 521.9 966 45.9
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 1.7e-145 521.2 572 55.9
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 6.3e-145 519.2 939 44.9
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 3.5e-143 513.5 959 44.7
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 3.5e-143 513.5 652 49.7
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 2.5e-141 507.3 995 47.3
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 7.2e-141 505.8 928 46.7
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 9.5e-141 505.4 706 49.9
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.0e-139 501.9 959 47.8
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 1.8e-139 501.1 958 44.8
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 2.3e-139 500.7 669 50.2
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 1.4e-136 491.5 951 45.4
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 1.8e-136 491.1 761 46.0
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 1.8e-136 491.1 720 45.8
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 2.4e-136 490.7 575 54.4
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 1.9e-133 481.1 746 45.8
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 6.8e-131 472.6 952 44.1
Potri.001G356800 Populus trichocarpa HOM05D006512 ORTHO05D008027 3.7e-129 466.8 821 47.3
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 3.2e-128 463.8 541 54.2
Gohir.A04G013500 Gossypium hirsutum HOM05D006512 ORTHO05D008027 3.9e-126 456.8 530 55.7
Phvul.008G270300 Phaseolus vulgaris HOM05D006512 ORTHO05D008027 1.5e-125 454.9 588 49.3
Solyc10g006260.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 9.5e-125 452.2 852 50.8
Manes.03G133700 Manihot esculenta HOM05D006512 ORTHO05D008027 1.2e-124 451.8 786 52.3
QL08p009135 Quercus lobata HOM05D006512 ORTHO05D008027 1.4e-123 448.4 784 50.3
Gorai.009G441100 Gossypium raimondii HOM05D006512 ORTHO05D008027 2.3e-123 447.6 800 50.2
Duzib170G0430 Durio zibethinus HOM05D006512 ORTHO05D008027 6.8e-123 446.0 807 46.5
FvH4_3g23160 Fragaria vesca HOM05D006512 ORTHO05D008027 2.2e-121 441.0 801 49.7
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 6.4e-121 439.5 692 45.5
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 3.2e-120 437.2 974 43.7
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 5.4e-120 436.4 693 45.6
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 9.2e-120 435.6 713 44.7
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 4.6e-119 433.3 694 45.2
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 1.6e-116 424.9 667 44.5
Dinv40780 Davidia involucrata HOM05D006512 ORTHO05D008027 4.7e-116 423.3 602 61.1
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 8.1e-116 422.5 673 44.9
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 2.0e-114 417.9 673 44.1
Eucgr.F00738 Eucalyptus grandis HOM05D006512 ORTHO05D008027 2.0e-114 417.9 509 53.2
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 5.8e-114 416.4 724 43.6
LjContig00272g0012578 Lotus japonicus HOM05D006512 ORTHO05D008027 5.8e-114 416.4 558 49.6
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 7.1e-112 409.5 691 45.3
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 3.3e-109 400.6 726 41.3
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 2.4e-107 394.4 715 42.8
Ca_06341_v3 Cicer arietinum L. HOM05D006512 ORTHO05D008027 1.9e-104 384.8 802 45.3
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 1.0e-102 379.0 770 40.1
HanXRQChr11g0335931 Helianthus annuus HOM05D006512 ORTHO05D008027 1.5e-101 375.2 803 46.8
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 1.2e-98 365.5 765 39.0
PSO675G4144 Papaver somniferum HOM05D006512 ORTHO05D008027 1.9e-96 358.2 587 43.3
Sc03g0008470 Simmondsia chinensis HOM05D006512 ORTHO05D008027 1.2e-95 355.5 795 45.2
MD11G1213200 Malus domestica HOM05D006512 ORTHO05D008027 5.6e-93 346.7 761 48.6
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 7.3e-93 346.3 336 60.1
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 6.2e-92 343.2 778 37.1
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 6.9e-91 339.7 356 57.0
GSVIVG01037687001 Vitis vinifera HOM05D006512 ORTHO05D008027 8.4e-89 332.8 647 43.1
Lalb_Chr17g0348651 Lupinus albus HOM05D006512 ORTHO05D008027 1.6e-87 328.6 518 46.3
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 4.5e-82 310.5 769 34.3
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 1.0e-81 309.3 851 34.4
Psat2g014000 Pisum sativum HOM05D006512 ORTHO05D008027 6.0e-79 300.1 764 44.2
Cc05_g14000 Coffea canephora HOM05D006512 ORTHO05D008027 3.9e-78 297.4 666 51.5
Sp6g17030 Schrenkiella parvula HOM05D006512 ORTHO05D008027 1.9e-77 295.0 543 42.5
CDE04G1000 Ceratophyllum demersum HOM05D006512 ORTHO05D008027 2.4e-75 288.1 624 39.3
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 6.1e-71 273.5 947 33.6
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 1.1e-67 262.7 403 43.9
AT5G55100 Arabidopsis thaliana HOM05D006512 ORTHO05D008027 5.0e-57 227.3 504 40.5
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 3.7e-52 211.1 757 31.4
Cc05_g14010 Coffea canephora HOM05D006512 ORTHO05D008027 2.0e-42 178.7 143 66.4
GSVIVG01037689001 Vitis vinifera HOM05D006512 ORTHO05D008027 9.4e-40 169.9 147 61.9
HanXRQChr11g0335921 Helianthus annuus HOM05D006512 ORTHO05D008027 8.8e-38 163.3 142 60.6
QL08p009130 Quercus lobata HOM05D006512 ORTHO05D008027 1.4e-35 156.0 147 65.3
Zm00001eb360910 Zea mays HOM05D006512 ORTHO05D008027 5.9e-34 150.6 531 29.8
Solyc10g006250.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 7.2e-32 143.7 143 61.5
Eucgr.F00737 Eucalyptus grandis HOM05D006512 ORTHO05D008027 1.8e-30 139.0 148 60.1
MD11G1213100 Malus domestica HOM05D006512 ORTHO05D008027 2.6e-29 135.2 150 54.0
CARHR268440 Cardamine hirsuta HOM05D006512 ORTHO05D008027 4.9e-28 131.0 153 49.7
CANSAT56G4300 Cannabis sativa HOM05D006512 ORTHO05D008027 2.0e-26 125.6 138 54.3
Lalb_Chr17g0348641 Lupinus albus HOM05D006512 ORTHO05D008027 5.0e-25 120.9 146 56.8
Actinidia32261 Actinidia chinensis HOM05D006512 ORTHO05D008027 3.7e-12 78.2 70 60.0
Actinidia02676 Actinidia chinensis HOM05D000736 ORTHO05D008027 3.5e-10 71.6 122 42.6
Cre11.g481700 Chlamydomonas reinhardtii HOM05D006512 ORTHO05D008027 7.8e-10 70.5 68 48.5
CBR_g49368 Chara braunii HOM05D000019 ORTHO05D000048 6.6e-09 67.4 134 30.6
VMungo0251G0907 Vigna mungo HOM05D001291 ORTHO05D008027 3.6e-07 61.6 75 50.7
ClCG11G007770 Citrullus lanatus HOM05D002594 ORTHO05D003499 4.7e-07 61.2 138 29.7
Cpa.g.c37452 Carica papaya HOM05D006512 ORTHO05D008027 8.1e-07 60.5 61 65.6
PRCOL_00002654 Prasinoderma coloniale HOM05D002594 ORTHO05D003499 8.1e-07 60.5 55 41.8
MELO3C008151.2 Cucumis melo HOM05D002594 ORTHO05D003499 2.3e-06 58.9 136 27.2
Oeu025252.1 Olea europaea HOM05D002594 ORTHO05D003499 2.3e-06 58.9 86 33.7
MSTRG.7588 Avicennia marina HOM05D002594 ORTHO05D003499 4.0e-06 58.2 86 32.6
MD13G1244100 Malus domestica HOM05D002594 ORTHO05D003499 6.8e-06 57.4 120 26.7
Prupe.1G077400 Prunus persica HOM05D002594 ORTHO05D003499 8.9e-06 57.0 152 25.7


User provided reference genes

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