Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C863T22 Lonicera japonica HOM05D003177 ORTHO05D003481 4.1e-171 604.7 332 100.0
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 2.7e-114 416.0 300 67.7
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 2.5e-112 409.5 296 69.6
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 3.3e-112 409.1 297 69.0
QL08p013320 Quercus lobata HOM05D003177 ORTHO05D003481 2.8e-111 406.0 292 70.9
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 4.8e-111 405.2 300 68.0
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 6.3e-111 404.8 285 70.2
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 1.1e-110 404.1 300 67.3
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 3.8e-108 395.6 278 69.1
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 4.2e-107 392.1 286 68.5
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 2.7e-106 389.4 300 66.7
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 1.3e-105 387.1 290 67.9
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.3e-105 387.1 302 65.6
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 3.9e-105 385.6 301 65.1
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 1.1e-104 384.0 300 64.3
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 1.1e-104 384.0 289 67.5
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 1.5e-104 383.6 300 65.0
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 1.9e-104 383.3 277 69.7
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.5e-104 382.9 301 64.5
PGSC0003DMG400019225 Solanum tuberosum HOM05D003177 ORTHO05D003481 9.7e-104 380.9 295 63.7
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 6.3e-103 378.3 292 64.7
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 6.3e-103 378.3 301 63.8
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 1.1e-102 377.5 300 63.3
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 1.1e-102 377.5 300 60.7
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 1.8e-102 376.7 292 63.7
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 2.4e-102 376.3 300 62.3
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.1e-102 375.6 301 63.1
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 2.0e-101 373.2 300 64.0
Ciclev10008545m.g Citrus clementina HOM05D003177 ORTHO05D003481 4.5e-101 372.1 289 62.3
Sc19g0005940 Simmondsia chinensis HOM05D003177 ORTHO05D003481 2.2e-100 369.8 277 67.1
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 2.9e-100 369.4 292 63.4
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 5.0e-100 368.6 287 64.5
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 8.5e-100 367.9 316 60.8
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 1.4e-99 367.1 301 62.8
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 2.5e-99 366.3 301 63.1
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 3.2e-99 365.9 301 60.5
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.2e-99 365.5 333 58.0
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 2.1e-98 363.2 289 64.0
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 3.6e-98 362.5 288 62.5
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 1.4e-97 360.5 282 64.5
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 1.8e-97 360.1 289 63.7
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 5.1e-97 358.6 301 61.8
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.7e-97 358.2 279 65.9
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 6.7e-97 358.2 300 58.7
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 1.5e-96 357.1 253 70.4
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 2.6e-96 356.3 282 63.5
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.4e-96 355.5 279 65.6
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 1.3e-95 354.0 298 60.7
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 1.3e-95 354.0 282 62.8
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 2.8e-95 352.8 292 59.6
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 4.8e-95 352.1 289 62.6
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 6.3e-95 351.7 285 62.5
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.4e-94 350.5 282 63.1
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 5.3e-94 348.6 300 58.3
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 4.5e-93 345.5 282 61.3
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 5.9e-93 345.1 301 60.1
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 2.9e-92 342.8 289 58.5
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 8.5e-92 341.3 283 59.0
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 1.9e-91 340.1 292 60.6
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 4.2e-91 339.0 301 57.1
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 4.2e-91 339.0 301 59.5
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 9.4e-91 337.8 301 59.1
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 1.2e-90 337.4 282 62.1
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 4.7e-90 335.5 301 57.5
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 1.4e-89 334.0 301 57.8
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 1.8e-89 333.6 289 59.5
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 2.3e-89 333.2 299 57.2
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 2.6e-88 329.7 264 63.6
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 3.7e-87 325.9 323 55.4
CDE12G0546 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 1.1e-86 324.3 299 54.5
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 1.4e-86 323.9 301 55.5
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 1.8e-86 323.6 296 55.7
CsaV3_UNG229000 Cucumis sativus L. HOM05D003177 ORTHO05D003481 7.0e-86 321.6 326 53.1
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 7.0e-86 321.6 252 63.5
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 2.0e-85 320.1 296 57.1
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 1.1e-83 314.3 300 53.3
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 2.5e-83 313.2 296 52.7
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 5.5e-83 312.0 300 53.3
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 7.2e-83 311.6 296 52.7
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 9.4e-83 311.2 300 53.0
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.2e-82 310.8 300 52.0
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 2.1e-82 310.1 296 53.4
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 1.4e-81 307.4 281 56.9
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 3.0e-81 306.2 317 51.1
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 6.7e-81 305.1 301 52.8
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 1.2e-80 304.3 307 51.8
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 1.2e-80 304.3 307 51.8
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 1.2e-80 304.3 305 50.8
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 1.5e-80 303.9 296 52.0
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 2.6e-80 303.1 315 49.2
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 4.4e-80 302.4 296 52.4
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 5.7e-80 302.0 282 57.1
RcHm_v2.0_Chr5g0037561 Rosa chinensis HOM05D003177 ORTHO05D003481 5.7e-80 302.0 233 65.7
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 1.7e-79 300.4 286 53.5
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 3.7e-79 299.3 296 51.0
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 4.8e-79 298.9 300 50.3
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 3.1e-78 296.2 286 53.1
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 3.1e-78 296.2 287 51.6
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 3.1e-78 296.2 278 55.4
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 4.1e-78 295.8 300 49.3
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.2e-77 294.3 282 53.2
Glyma.12G135500 Glycine max HOM05D003177 ORTHO05D003481 1.3e-76 290.8 256 61.3
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 1.7e-76 290.4 282 52.8
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 1.7e-76 290.4 306 50.3
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 2.2e-76 290.0 287 51.2
Actinidia35317 Actinidia chinensis HOM05D003177 ORTHO05D003481 2.9e-76 289.7 299 51.5
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 2.5e-75 286.6 300 50.0
Eucgr.G00523 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.4e-73 280.8 227 63.4
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 5.7e-72 275.4 270 50.7
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 4.1e-70 269.2 184 71.7
VMungo1127G0069 Vigna mungo HOM05D003177 ORTHO05D003481 5.5e-67 258.8 246 57.7
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 4.9e-63 245.7 245 54.3
Glyma.12G214200 Glycine max HOM05D003177 ORTHO05D003481 7.0e-62 241.9 236 55.1
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 9.2e-62 241.5 274 47.8
Lj3g0022760 Lotus japonicus HOM05D003177 ORTHO05D003481 2.0e-61 240.4 239 52.7
Hma1.2p1_1546F.1_g289990 Hydrangea macrophylla HOM05D003177 ORTHO05D003481 1.7e-60 237.3 198 62.1
Lj4g0006066 Lotus japonicus HOM05D003177 ORTHO05D003481 8.6e-60 235.0 239 52.3
Glyma.13G287400 Glycine max HOM05D003177 ORTHO05D003481 1.5e-59 234.2 243 53.5
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.0e-57 228.0 257 49.4
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 1.0e-57 228.0 257 49.4
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.8e-57 227.3 257 49.4
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.6e-56 223.4 257 48.6
arahy.Tifrunner.gnm1.ann1.P5VPT7 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.4e-56 223.0 232 53.4
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 9.2e-54 214.9 272 46.7
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 2.3e-52 210.3 272 46.3
Phvul.003G295700 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 5.4e-46 189.1 171 60.8
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 1.2e-45 188.0 177 55.4
arahy.Tifrunner.gnm1.ann1.BRX1G6 Arachis hypogaea HOM05D003177 ORTHO05D003481 4.3e-43 179.5 179 55.9
Medtr4g133410 Medicago truncatula HOM05D003177 ORTHO05D003481 9.9e-40 168.3 300 35.7
Medtr7g007510 Medicago truncatula HOM05D003177 ORTHO05D003481 6.4e-39 165.6 219 46.6
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 3.2e-38 163.3 122 67.2
CSS0025638 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 4.7e-34 149.4 108 68.5
Eucgr.H00088 Eucalyptus grandis HOM05D003177 ORTHO05D003481 6.8e-33 145.6 118 61.9
Medtr5g034890 Medicago truncatula HOM05D003177 ORTHO05D003481 1.2e-32 144.8 296 32.1
ECA240G3581 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.7e-31 141.0 183 41.5
arahy.Tifrunner.gnm1.ann1.C6RLDL Arachis hypogaea HOM05D003177 ORTHO05D003481 1.2e-29 134.8 114 64.9
SEGI_25291 Sequoiadendron giganteum HOM05D003177 ORTHO05D003481 3.6e-26 123.2 184 39.1
arahy.Tifrunner.gnm1.ann1.4630L6 Arachis hypogaea HOM05D003177 ORTHO05D003481 8.1e-26 122.1 195 41.5
TPR.G36748 Trifolium pratense HOM05D003177 ORTHO05D003481 3.1e-25 120.2 109 55.0
arahy.Tifrunner.gnm1.ann1.PSAJ1X Arachis hypogaea HOM05D003177 ORTHO05D003481 1.3e-23 114.8 105 57.1
DCAR_032350 Daucus carota HOM05D003177 ORTHO05D003481 4.9e-23 112.8 108 57.4
Lju3590A0T10 Lonicera japonica HOM05D003177 ORTHO05D003481 1.1e-22 111.7 200 41.0
ECA240G2036 Erigeron canadensis HOM05D003177 ORTHO05D003481 1.4e-22 111.3 164 34.8
RcHm_v2.0_Chr5g0037551 Rosa chinensis HOM05D003177 ORTHO05D003481 2.7e-21 107.1 64 78.1
CARHR054770 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.7e-20 104.4 128 46.9
TPR.G36746 Trifolium pratense HOM05D003177 ORTHO05D003481 1.9e-19 100.9 120 48.3
DCAR_015959 Daucus carota HOM05D003177 ORTHO05D003481 4.8e-18 96.3 141 41.8
Medtr8g070020 Medicago truncatula HOM05D003177 ORTHO05D003481 4.8e-18 96.3 230 30.9
Psat5g251840 Pisum sativum HOM05D003177 ORTHO05D003481 6.2e-18 95.9 119 46.2
Medtr2g082940 Medicago truncatula HOM05D003177 ORTHO05D003481 8.1e-18 95.5 142 41.5
Pp3c12_4690 Physcomitrium patens HOM05D015612 ORTHO05D003481 9.0e-17 92.0 228 27.2
Ca_01752_v3 Cicer arietinum L. HOM05D003177 ORTHO05D003481 1.9e-14 84.3 247 30.8
Pp3c10_3690 Physcomitrium patens HOM05D015612 ORTHO05D003481 1.2e-13 81.6 156 32.7
Medtr7g025525 Medicago truncatula HOM05D003177 ORTHO05D003481 7.9e-13 79.0 70 54.3
AagrBONN_evm.TU.Sc2ySwM_369.261 Anthoceros agrestis HOM05D015612 ORTHO05D003481 8.7e-12 75.5 203 24.6
HPP92_001837 Vanilla planifolia HOM05D000001 ORTHO05D000003 1.3e-07 61.6 171 26.3
FvH4_1g14410 Fragaria vesca HOM05D000001 ORTHO05D000003 2.2e-07 60.8 175 24.6
SMO147G0336 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 2.9e-07 60.5 170 23.5
FAN19G0210 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.9e-07 59.7 175 24.0
AagrBONN_evm.TU.Sc2ySwM_117.3506 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.4e-07 59.3 173 25.4
AagrBONN_evm.TU.Sc2ySwM_368.2310 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.4e-07 58.9 295 24.1
CANSAT11G1422 Cannabis sativa HOM05D000001 ORTHO05D000003 1.9e-06 57.8 153 27.5
AagrBONN_evm.TU.Sc2ySwM_344.150 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.5e-06 57.4 299 24.4
Sed0027032 Sechium edule HOM05D000001 ORTHO05D010579 4.2e-06 56.6 176 26.1
FAN26G0706 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.5e-06 56.2 175 23.4
CAN.G397.65 Capsicum annuum HOM05D000001 ORTHO05D000003 7.1e-06 55.8 176 23.9
Ca_07912_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009834 7.1e-06 55.8 178 23.6
Mapoly0011s0128 Marchantia polymorpha HOM05D015612 ORTHO05D003481 7.1e-06 55.8 146 26.0
Oeu033229.1 Olea europaea HOM05D000001 ORTHO05D010340 7.1e-06 55.8 269 24.5
HPP92_010467 Vanilla planifolia HOM05D000001 ORTHO05D009834 7.1e-06 55.8 171 25.1
PSO478G4544 Papaver somniferum HOM05D000001 ORTHO05D000003 9.3e-06 55.5 175 26.3


User provided reference genes

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