Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 5.6e-121 437.6 214 100.0
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 1.5e-102 376.3 204 88.2
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 1.5e-102 376.3 204 88.2
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 2.0e-102 375.9 204 88.2
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 2.6e-102 375.6 205 88.3
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 2.9e-101 372.1 213 83.1
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 2.9e-101 372.1 213 83.1
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 4.9e-101 371.3 204 87.3
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 6.5e-101 370.9 204 86.8
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 1.1e-100 370.2 204 86.3
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 1.4e-100 369.8 204 86.3
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.9e-100 369.4 204 86.3
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.9e-100 369.4 204 86.3
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 2.5e-100 369.0 204 87.7
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 4.2e-100 368.2 201 87.1
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 4.2e-100 368.2 204 86.8
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 4.2e-100 368.2 204 86.8
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 5.5e-100 367.9 204 87.3
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 7.1e-100 367.5 204 86.3
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 7.1e-100 367.5 204 86.3
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 1.2e-99 366.7 204 87.7
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 1.6e-99 366.3 200 89.0
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 3.5e-99 365.2 204 84.8
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 3.5e-99 365.2 204 85.3
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 7.9e-99 364.0 204 86.3
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 7.9e-99 364.0 204 85.3
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 2.3e-98 362.5 204 83.8
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 2.3e-98 362.5 204 86.3
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 2.3e-98 362.5 211 81.5
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 2.3e-98 362.5 203 85.7
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 3.0e-98 362.1 201 86.6
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 3.9e-98 361.7 204 83.3
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 5.1e-98 361.3 199 85.9
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 6.7e-98 360.9 204 82.8
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 8.7e-98 360.5 204 84.3
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 8.7e-98 360.5 204 84.8
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 1.1e-97 360.1 204 82.8
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 1.5e-97 359.8 204 82.8
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 1.5e-97 359.8 204 83.8
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 1.5e-97 359.8 204 83.8
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 3.3e-97 358.6 204 83.8
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 3.3e-97 358.6 204 82.8
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 9.6e-97 357.1 204 82.4
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 1.6e-96 356.3 204 82.8
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 2.8e-96 355.5 204 82.8
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 2.8e-96 355.5 204 85.3
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.1e-95 353.6 204 83.3
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 1.4e-95 353.2 249 71.9
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 1.4e-95 353.2 204 81.4
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 1.8e-95 352.8 204 81.9
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 2.4e-95 352.4 204 82.8
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 3.1e-95 352.1 208 82.2
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 4.1e-95 351.7 204 82.4
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 5.3e-95 351.3 200 83.5
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 5.3e-95 351.3 201 82.1
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 9.0e-95 350.5 213 80.3
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 9.0e-95 350.5 204 82.8
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 9.0e-95 350.5 204 82.8
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.2e-94 350.1 204 82.8
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 5.9e-94 347.8 201 82.6
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 1.0e-93 347.1 204 80.9
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 1.0e-93 347.1 204 80.9
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 1.0e-93 347.1 204 82.8
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 1.3e-93 346.7 204 81.4
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 1.7e-93 346.3 204 80.9
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 1.7e-93 346.3 204 81.9
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 2.9e-93 345.5 214 78.5
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 3.8e-93 345.1 204 81.9
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 6.5e-93 344.4 204 79.9
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 6.5e-93 344.4 204 79.9
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 6.5e-93 344.4 204 80.4
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 8.4e-93 344.0 204 80.4
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 8.4e-93 344.0 204 80.4
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 1.1e-92 343.6 204 80.4
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 1.1e-92 343.6 204 79.9
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 1.1e-92 343.6 202 79.7
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 1.4e-92 343.2 204 79.9
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 2.5e-92 342.4 204 79.9
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 2.5e-92 342.4 205 80.5
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 2.5e-92 342.4 204 79.9
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 3.2e-92 342.0 204 80.4
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 4.2e-92 341.7 204 79.9
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 9.3e-92 340.5 205 79.5
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 2.7e-91 339.0 205 77.1
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 4.6e-91 338.2 210 76.2
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 6.1e-91 337.8 210 76.7
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 1.3e-90 336.7 204 77.9
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 1.3e-90 336.7 205 78.5
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 1.8e-90 336.3 201 80.1
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 3.0e-90 335.5 206 77.7
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 8.7e-90 334.0 204 76.0
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 1.5e-89 333.2 204 76.5
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 2.5e-89 332.4 204 77.0
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 4.3e-89 331.6 204 79.4
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 4.3e-89 331.6 178 89.3
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 1.6e-88 329.7 204 79.4
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 1.6e-88 329.7 205 72.7
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 3.7e-88 328.6 210 75.2
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 1.5e-86 323.2 206 75.7
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 1.0e-85 320.5 208 75.5
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.2e-84 315.5 207 75.8
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 1.2e-83 313.5 188 81.4
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 1.6e-83 313.2 181 82.9
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 1.1e-79 300.4 204 74.0
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 6.9e-79 297.7 201 69.2
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 1.0e-74 283.9 210 66.7
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 5.7e-73 278.1 204 67.6
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 9.7e-73 277.3 204 67.2
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 1.0e-69 267.3 153 81.0
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 5.0e-69 265.0 207 59.4
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 4.2e-68 261.9 159 78.0
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 4.7e-67 258.5 207 55.6
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 2.0e-65 253.1 150 81.3
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 3.5e-62 242.3 199 58.3
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 3.5e-62 242.3 199 54.8
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 1.0e-61 240.7 153 77.1
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 5.5e-60 235.0 127 83.5
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 2.6e-57 226.1 158 67.7
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 6.2e-27 125.2 110 49.1
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 3.8e-16 89.4 100 51.0
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 1.7e-13 80.5 200 30.5
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.9e-13 79.3 47 68.1
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 1.2e-11 74.3 195 25.1
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 2.4e-07 60.1 45 64.4
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 7.1e-07 58.5 32 87.5


User provided reference genes

Program Settings