Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 0.0e+00 1392.5 795 100.0
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 2.3e-111 407.5 806 45.0
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 2.5e-105 387.5 827 43.9
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 3.7e-101 373.6 848 42.6
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 1.5e-97 361.7 924 39.4
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 4.7e-96 356.7 799 40.7
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 2.0e-94 351.3 617 48.3
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 2.0e-94 351.3 617 48.3
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 2.6e-94 350.9 769 42.0
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 8.3e-93 345.9 823 39.7
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 3.1e-92 344.0 526 44.9
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 9.1e-92 342.4 847 40.4
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 8.5e-90 335.9 539 45.5
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 3.2e-89 334.0 796 38.8
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 1.6e-88 331.6 711 43.0
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 6.1e-88 329.7 523 45.3
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 2.3e-87 327.8 553 45.9
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 5.2e-87 326.6 843 39.9
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 6.8e-87 326.2 843 39.7
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 1.2e-86 325.5 904 36.6
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 5.7e-86 323.2 527 45.4
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 5.7e-86 323.2 845 39.9
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 1.3e-85 322.0 812 39.9
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.7e-85 321.6 607 44.6
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 2.8e-85 320.9 623 40.4
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.8e-84 318.2 606 45.2
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 7.0e-84 316.2 799 39.2
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 3.5e-83 313.9 561 43.3
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 2.5e-81 307.8 233 70.8
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 2.5e-81 307.8 288 63.2
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 5.6e-81 306.6 517 44.7
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 4.7e-80 303.5 517 45.5
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 8.0e-80 302.8 848 36.3
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 2.3e-79 301.2 847 36.6
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 2.3e-79 301.2 855 37.8
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 3.0e-79 300.8 319 58.3
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 1.2e-78 298.9 820 39.8
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 4.4e-78 297.0 553 47.0
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 2.9e-77 294.3 601 39.8
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 8.3e-77 292.7 841 38.8
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 1.4e-76 292.0 250 66.8
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 1.4e-76 292.0 605 44.6
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 2.4e-76 291.2 609 44.2
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 1.6e-75 288.5 864 35.3
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 4.6e-75 287.0 820 39.5
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 5.9e-75 286.6 832 38.0
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 7.8e-75 286.2 495 48.5
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 3.0e-74 284.3 311 55.6
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 5.0e-74 283.5 303 54.5
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 6.6e-74 283.1 845 38.0
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 1.1e-73 282.3 597 43.6
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 1.5e-73 282.0 515 41.7
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 4.3e-73 280.4 276 60.1
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 7.3e-73 279.6 288 58.0
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 7.3e-73 279.6 289 57.4
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 9.5e-73 279.3 414 45.7
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 2.8e-72 277.7 301 54.8
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.0e-71 275.8 275 57.8
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.0e-71 275.8 521 42.8
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 1.8e-71 275.0 257 60.7
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.3e-71 274.6 548 42.2
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 2.3e-71 274.6 521 42.8
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 4.0e-71 273.9 550 42.0
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 6.8e-71 273.1 880 35.8
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.2e-70 272.3 580 41.4
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.2e-70 272.3 549 41.0
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.6e-70 271.2 566 43.8
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 9.8e-70 269.2 305 54.4
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 8.3e-69 266.2 572 40.6
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 8.3e-69 266.2 872 37.0
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 4.1e-68 263.8 576 43.4
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 7.0e-68 263.1 349 51.0
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 2.7e-67 261.2 299 56.2
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 2.7e-67 261.2 335 50.4
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 4.6e-67 260.4 241 61.0
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 4.6e-67 260.4 336 51.2
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 6.0e-67 260.0 555 47.0
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.0e-66 259.2 885 34.4
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 3.0e-66 257.7 912 32.8
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 3.9e-66 257.3 603 38.3
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 8.6e-66 256.1 283 55.1
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 1.9e-65 255.0 452 44.7
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 2.5e-65 254.6 294 53.1
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 4.3e-65 253.8 434 50.0
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 4.3e-65 253.8 280 55.4
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 9.5e-65 252.7 286 52.8
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 2.1e-64 251.5 292 52.4
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 8.1e-64 249.6 279 53.4
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 1.1e-63 249.2 285 52.3
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 4.0e-63 247.3 223 60.5
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 4.0e-63 247.3 292 52.1
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 5.2e-63 246.9 359 46.2
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.2e-62 245.7 534 38.8
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 2.6e-62 244.6 186 71.0
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 3.4e-62 244.2 318 48.4
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 5.8e-62 243.4 293 52.2
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 7.5e-62 243.0 307 52.8
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 9.8e-62 242.7 550 38.9
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 2.2e-61 241.5 252 53.2
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 2.9e-61 241.1 327 46.8
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 1.4e-60 238.8 477 47.6
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 3.2e-60 237.7 541 40.5
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 7.1e-60 236.5 305 52.1
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 9.2e-60 236.1 286 51.4
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 6.0e-59 233.4 326 46.9
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 6.0e-59 233.4 326 46.9
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 1.3e-58 232.3 869 35.2
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 1.7e-58 231.9 567 38.8
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.9e-58 230.7 170 69.4
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 6.6e-58 229.9 187 63.6
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 8.6e-58 229.6 331 46.8
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 2.5e-57 228.0 853 35.3
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 3.3e-57 227.6 307 47.9
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.4e-55 222.2 170 67.6
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 1.4e-55 222.2 786 36.0
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 1.8e-55 221.9 297 45.1
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 1.7e-53 215.3 203 57.1
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 3.8e-53 214.2 298 47.0
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 8.4e-53 213.0 306 46.4
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 2.1e-51 208.4 293 48.8
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 3.5e-51 207.6 320 46.2
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 3.5e-51 207.6 515 36.9
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 1.7e-50 205.3 208 51.9
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 5.1e-50 203.8 301 43.2
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 6.6e-50 203.4 213 54.0
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 4.7e-48 197.2 210 55.2
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 2.4e-47 194.9 305 43.9
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 3.1e-47 194.5 294 45.6
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 2.6e-46 191.4 328 41.2
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 3.2e-44 184.5 356 41.3
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 8.7e-42 176.4 200 52.5
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 3.6e-40 171.0 226 46.9
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 1.9e-36 158.7 230 43.0
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 4.2e-36 157.5 298 40.3
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 1.3e-34 152.5 212 43.4
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 2.5e-33 148.3 172 48.3
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 3.3e-33 147.9 225 44.0
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 9.6e-33 146.4 136 54.4
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 2.8e-32 144.8 294 38.1
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 5.8e-30 137.1 248 38.3
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 1.1e-28 132.9 93 69.9
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 9.3e-28 129.8 119 58.0
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 6.9e-23 113.6 93 65.6
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 2.3e-18 98.6 161 47.2
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 8.7e-18 96.7 84 60.7
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 9.6e-17 93.2 71 63.4
Dinv01388 Davidia involucrata HOM05D033017 ORTHO05D005266 3.4e-14 84.7 141 44.0
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 1.8e-10 72.4 119 31.1
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 5.7e-09 67.4 158 31.0
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 2.2e-08 65.5 100 40.0
SEGI_25704 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.8e-07 62.4 85 48.2


User provided reference genes

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