Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 2.7e-139 498.8 282 100.0
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 6.9e-34 148.7 326 39.6
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 1.2e-30 137.9 319 37.0
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 8.7e-29 131.7 320 35.3
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 4.3e-28 129.4 289 37.7
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 1.4e-26 124.4 311 36.3
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 2.6e-25 120.2 340 32.6
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 3.4e-25 119.8 329 34.0
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 6.4e-24 115.5 316 34.5
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 1.4e-23 114.4 326 33.7
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 2.4e-23 113.6 310 34.2
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 2.4e-23 113.6 293 36.5
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 4.2e-23 112.8 316 35.1
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.2e-22 111.3 316 33.2
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 1.6e-22 110.9 339 34.2
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 2.1e-22 110.5 326 33.4
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 2.1e-22 110.5 312 34.0
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 2.7e-22 110.2 339 31.3
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 1.0e-21 108.2 349 31.2
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 1.3e-21 107.8 329 33.1
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 1.3e-21 107.8 318 33.6
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.3e-21 107.8 340 31.8
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 1.8e-21 107.5 306 34.0
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 3.0e-21 106.7 330 32.1
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 3.0e-21 106.7 331 31.1
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 3.9e-21 106.3 317 33.4
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 5.1e-21 105.9 360 31.7
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 6.7e-21 105.5 324 32.7
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 6.7e-21 105.5 336 31.2
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 6.7e-21 105.5 319 32.9
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 8.7e-21 105.1 350 34.0
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.1e-20 104.8 350 34.0
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 1.5e-20 104.4 331 31.1
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 1.9e-20 104.0 351 30.2
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 1.9e-20 104.0 333 31.2
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 1.9e-20 104.0 289 35.6
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 2.5e-20 103.6 325 32.0
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 2.5e-20 103.6 330 31.8
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 3.3e-20 103.2 346 32.1
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 3.3e-20 103.2 336 29.2
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.3e-19 101.3 353 34.3
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.8e-19 100.1 332 35.5
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 3.7e-19 99.8 332 35.5
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 4.8e-19 99.4 315 33.7
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 6.2e-19 99.0 345 32.8
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 1.4e-18 97.8 340 30.0
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.4e-18 97.1 359 29.8
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 3.1e-18 96.7 363 34.7
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 3.1e-18 96.7 335 31.6
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.1e-18 96.7 331 30.5
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 3.1e-18 96.7 326 33.1
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 5.3e-18 95.9 366 28.7
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 5.3e-18 95.9 333 32.7
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.2e-17 94.7 316 31.0
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 1.5e-17 94.4 315 33.0
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 1.5e-17 94.4 315 33.0
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 1.5e-17 94.4 315 33.0
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.5e-17 94.4 337 31.2
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.5e-17 94.4 300 33.0
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 2.0e-17 94.0 342 29.2
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 2.6e-17 93.6 347 29.1
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 3.4e-17 93.2 337 31.5
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 5.8e-17 92.4 350 30.0
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 7.6e-17 92.0 329 31.0
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 7.6e-17 92.0 329 31.0
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 7.6e-17 92.0 329 31.0
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 7.6e-17 92.0 304 31.2
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.0e-16 91.7 309 32.4
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.0e-16 91.7 330 31.2
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 1.7e-16 90.9 301 30.6
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.7e-16 90.9 306 31.7
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 2.2e-16 90.5 346 30.9
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.9e-16 90.1 342 31.0
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 6.5e-16 89.0 348 34.2
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 6.5e-16 89.0 360 28.1
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 6.5e-16 89.0 342 31.3
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 8.4e-16 88.6 331 31.1
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 8.4e-16 88.6 307 30.9
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 1.4e-15 87.8 325 30.2
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 1.9e-15 87.4 350 27.4
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 2.5e-15 87.0 358 36.3
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 2.5e-15 87.0 302 30.8
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 4.2e-15 86.3 334 34.1
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 5.5e-15 85.9 290 36.2
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 7.1e-15 85.5 345 31.6
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 9.3e-15 85.1 325 32.9
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 9.3e-15 85.1 305 32.5
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.2e-14 84.7 339 32.2
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.1e-14 84.0 346 32.7
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 2.1e-14 84.0 293 29.7
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 2.1e-14 84.0 355 27.3
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 4.6e-14 82.8 304 31.9
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 7.9e-14 82.0 322 34.8
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 7.9e-14 82.0 326 30.7
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.0e-13 81.6 351 25.9
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 1.3e-13 81.3 319 36.7
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 1.8e-13 80.9 338 28.7
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 1.8e-13 80.9 338 28.7
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 1.8e-13 80.9 301 34.9
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 3.0e-13 80.1 307 30.6
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 3.9e-13 79.7 143 39.2
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 6.7e-13 79.0 363 31.1
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 1.5e-12 77.8 379 28.0
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 1.9e-12 77.4 353 26.9
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 1.9e-12 77.4 353 26.9
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 2.5e-12 77.0 340 28.5
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 2.5e-12 77.0 352 26.1
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 3.3e-12 76.6 316 28.8
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 3.3e-12 76.6 316 28.8
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 5.7e-12 75.9 337 29.7
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 7.4e-12 75.5 317 28.1
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.3e-11 74.7 358 29.3
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 1.3e-11 74.7 353 27.5
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.3e-11 74.7 345 29.0
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.3e-11 74.7 139 39.6
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 2.1e-11 73.9 335 29.3
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 2.1e-11 73.9 332 29.2
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 4.8e-11 72.8 348 27.9
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.1e-10 71.6 355 28.7
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 1.1e-10 71.6 360 27.5
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 2.4e-10 70.5 346 28.9
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 1.2e-09 68.2 286 28.0
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 1.0e-08 65.1 339 27.4
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.7e-08 64.3 352 31.2
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.2e-08 63.9 175 31.4
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 2.2e-08 63.9 339 28.6
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 2.9e-08 63.5 133 38.3
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 6.5e-08 62.4 350 27.4
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 6.5e-08 62.4 334 26.6
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 8.4e-08 62.0 341 27.0
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 3.2e-07 60.1 232 31.5
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 1.2e-06 58.2 42 69.0
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 1.2e-06 58.2 378 25.4
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 3.5e-06 56.6 46 63.0
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 7.9e-06 55.5 262 29.8


User provided reference genes

Program Settings