Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C56G7 Lonicera japonica HOM05D000921 ORTHO05D004153 0.0e+00 1288.5 662 100.0
Dinv32883 Davidia involucrata HOM05D000921 ORTHO05D004153 3.1e-287 991.5 694 75.6
Lj2C1164G7 Lonicera japonica HOM05D000921 ORTHO05D004153 2.5e-276 955.3 694 74.2
Actinidia19962 Actinidia chinensis HOM05D000921 ORTHO05D004153 3.6e-275 951.4 692 72.3
CSS0010203 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 1.0e-274 949.9 693 72.7
CSS0042369 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 1.4e-274 949.5 693 72.7
CSS0032745 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 1.2e-270 936.4 693 71.9
Cc01_g18990 Coffea canephora HOM05D000921 ORTHO05D004153 2.7e-270 935.3 694 70.3
vmacro02613 Vaccinium macrocarpon HOM05D000921 ORTHO05D004153 2.7e-270 935.3 694 71.8
Cfa006203 Carpinus fangiana HOM05D000921 ORTHO05D004153 1.1e-268 929.9 696 70.8
Atru.chr5.1523 Acer truncatum HOM05D000921 ORTHO05D004153 5.5e-268 927.5 696 71.1
CAN.G1072.6 Capsicum annuum HOM05D000921 ORTHO05D004153 1.2e-267 926.4 695 70.9
Thecc.01G271200 Theobroma cacao HOM05D000921 ORTHO05D004153 3.6e-267 924.9 697 71.0
Nitab4.5_0000459g0090 Nicotiana tabacum HOM05D000921 ORTHO05D004153 4.0e-266 921.4 713 69.6
CiPaw.07G086700 Carya illinoinensis HOM05D000921 ORTHO05D004153 2.0e-265 919.1 695 70.5
RcHm_v2.0_Chr6g0289881 Rosa chinensis HOM05D000921 ORTHO05D004153 9.8e-265 916.8 695 69.5
Peaxi162Scf00259g00414 Petunia axillaris HOM05D000921 ORTHO05D004153 1.7e-264 916.0 710 69.3
COL.COLO4_09186 Corchorus olitorius HOM05D000921 ORTHO05D004153 3.7e-264 914.8 694 70.5
Nitab4.5_0003424g0020 Nicotiana tabacum HOM05D000921 ORTHO05D004153 6.3e-264 914.1 676 72.2
FAN15G1223 Fragaria x ananassa HOM05D000921 ORTHO05D004153 8.3e-264 913.7 695 69.6
FAN20G3205 Fragaria x ananassa HOM05D000921 ORTHO05D004153 1.8e-263 912.5 695 69.6
TWI12G1077 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 3.1e-263 911.8 700 69.4
Prupe.8G234500 Prunus persica HOM05D000921 ORTHO05D004153 5.4e-263 911.0 695 69.1
TAR633G0413 Trochodendron aralioides HOM05D000921 ORTHO05D004153 9.1e-263 910.2 696 68.8
CANSAT25G1208 Cannabis sativa HOM05D000921 ORTHO05D004153 7.7e-262 907.1 702 69.1
Sopen09g027450 Solanum pennellii HOM05D000921 ORTHO05D004153 2.9e-261 905.2 695 69.9
FAN27G1722 Fragaria x ananassa HOM05D000921 ORTHO05D004153 6.5e-261 904.0 695 68.8
FvH4_2g22920 Fragaria vesca HOM05D000921 ORTHO05D004153 1.9e-260 902.5 695 68.6
Rhsim13G0028700 Rhododendron simsii HOM05D000921 ORTHO05D004153 4.2e-260 901.4 693 70.0
Solyc09g065700.3 Solanum lycopersicum HOM05D000921 ORTHO05D004153 5.5e-260 901.0 695 69.5
Potri.002G047700 Populus trichocarpa HOM05D000921 ORTHO05D004153 9.5e-260 900.2 697 69.9
QL12p042334 Quercus lobata HOM05D000921 ORTHO05D004153 3.6e-259 898.3 696 69.0
FAN24G0847 Fragaria x ananassa HOM05D000921 ORTHO05D004153 6.1e-259 897.5 695 68.3
TWI18G0154 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 1.4e-258 896.3 697 69.2
Duzib138G1896 Durio zibethinus HOM05D000921 ORTHO05D004153 1.8e-258 896.0 697 69.6
MD03G1257800 Malus domestica HOM05D000921 ORTHO05D004153 1.8e-258 896.0 695 68.3
Migut.D00355 Erythranthe guttata HOM05D000921 ORTHO05D004153 4.0e-258 894.8 692 68.2
Manes.01G203800 Manihot esculenta HOM05D000921 ORTHO05D004153 4.0e-258 894.8 693 69.8
Potri.005G215400 Populus trichocarpa HOM05D000921 ORTHO05D004153 2.0e-257 892.5 697 69.4
Gorai.007G140000 Gossypium raimondii HOM05D000921 ORTHO05D004153 7.5e-257 890.6 696 67.8
Gohir.D11G131000 Gossypium hirsutum HOM05D000921 ORTHO05D004153 2.8e-256 888.6 695 67.8
MD11G1278500 Malus domestica HOM05D000921 ORTHO05D004153 4.9e-256 887.9 694 68.2
Nn6g33594 Nelumbo nucifera HOM05D000921 ORTHO05D004153 1.8e-255 885.9 696 68.4
Lj5g0027434 Lotus japonicus HOM05D000921 ORTHO05D004153 9.2e-255 883.6 696 67.2
Duzib133G0456 Durio zibethinus HOM05D000921 ORTHO05D004153 2.7e-254 882.1 693 68.8
ClCG09G007420 Citrullus lanatus HOM05D000921 ORTHO05D004153 1.3e-253 879.8 695 67.5
Sabra05G0164600 Salix brachista HOM05D000921 ORTHO05D004153 1.3e-253 879.8 697 68.7
GSVIVG01003123001 Vitis vinifera HOM05D000921 ORTHO05D004153 2.9e-253 878.6 692 68.2
Glyma.02G144200 Glycine max HOM05D000921 ORTHO05D004153 5.0e-253 877.9 699 66.8
Lsat_1_v5_gn_5_185441 Lactuca sativa HOM05D000921 ORTHO05D004153 8.6e-253 877.1 693 66.8
CsaV3_7G027700 Cucumis sativus L. HOM05D000921 ORTHO05D004153 1.9e-252 875.9 696 67.1
Aqoxy5G00390 Aquilegia oxysepala HOM05D000921 ORTHO05D004153 2.5e-252 875.5 692 67.3
Psat6g058840 Pisum sativum HOM05D000921 ORTHO05D004153 7.3e-252 874.0 699 67.0
Sabra02G0038900 Salix brachista HOM05D000921 ORTHO05D004153 9.5e-252 873.6 710 67.2
MELO3C015783.2 Cucumis melo HOM05D000921 ORTHO05D004153 1.2e-251 873.2 696 66.8
Medtr1g071260 Medicago truncatula HOM05D000921 ORTHO05D004153 3.6e-251 871.7 695 67.6
Sed0015319 Sechium edule HOM05D000921 ORTHO05D004153 4.7e-251 871.3 695 66.8
Glyma.10G030000 Glycine max HOM05D000921 ORTHO05D004153 3.0e-250 868.6 699 66.2
THA.LOC104825985 Tarenaya hassleriana HOM05D000921 ORTHO05D004153 3.0e-250 868.6 695 67.5
Ca_09726_v3 Cicer arietinum L. HOM05D000921 ORTHO05D004153 6.8e-250 867.5 699 66.1
TPR.G34892 Trifolium pratense HOM05D000921 ORTHO05D004153 6.8e-250 867.5 699 66.4
PSO210G1924 Papaver somniferum HOM05D000921 ORTHO05D004153 7.5e-249 864.0 705 65.5
Gorai.004G056400 Gossypium raimondii HOM05D000921 ORTHO05D004153 1.3e-248 863.2 696 67.0
Phvul.007G175300 Phaseolus vulgaris HOM05D000921 ORTHO05D004153 1.7e-248 862.8 695 65.9
Eucgr.K03323 Eucalyptus grandis HOM05D000921 ORTHO05D004153 2.2e-248 862.4 696 65.9
SGA_v2.0_scaffold1G00535 Striga asiatica HOM05D000921 ORTHO05D004153 2.2e-248 862.4 673 68.1
arahy.Tifrunner.gnm1.ann1.0T0464 Arachis hypogaea HOM05D000921 ORTHO05D004153 1.1e-247 860.1 695 65.6
Thhalv10006519m.g Eutrema salsugineum HOM05D000921 ORTHO05D004153 2.4e-247 859.0 696 65.8
Lalb_Chr06g0162771 Lupinus albus HOM05D000921 ORTHO05D004153 1.2e-246 856.7 699 66.7
AL1G12520 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 7.8e-246 854.0 696 65.7
Sc17g0001160 Simmondsia chinensis HOM05D000921 ORTHO05D004153 3.9e-245 851.7 694 65.0
Sp1g02060 Schrenkiella parvula HOM05D000921 ORTHO05D004153 1.1e-244 850.1 696 64.7
HanXRQChr01g0005671 Helianthus annuus HOM05D000921 ORTHO05D004153 4.3e-244 848.2 694 65.6
Ciclev10018426m.g Citrus clementina HOM05D000921 ORTHO05D004153 5.6e-244 847.8 611 72.8
Gohir.A11G125600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 7.3e-244 847.4 696 65.2
C08p52940 Brassica napus HOM05D000921 ORTHO05D004153 2.8e-243 845.5 697 64.8
BolC8t52810H Brassica oleracea HOM05D000921 ORTHO05D004153 2.8e-243 845.5 697 64.8
MSTRG.21525 Avicennia marina HOM05D000921 ORTHO05D004153 3.6e-243 845.1 692 65.6
CARHR002410 Cardamine hirsuta HOM05D000921 ORTHO05D004153 3.6e-243 845.1 700 65.0
A09p68370 Brassica napus HOM05D000921 ORTHO05D004153 1.1e-242 843.6 697 64.7
AT1G03060 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 1.4e-242 843.2 700 64.6
Dinv22500 Davidia involucrata HOM05D000921 ORTHO05D004153 1.4e-242 843.2 694 67.7
Gorai.004G217600 Gossypium raimondii HOM05D000921 ORTHO05D004153 1.4e-242 843.2 696 65.5
Aa31LG1G9470 Aethionema arabicum HOM05D000921 ORTHO05D004153 1.8e-242 842.8 696 65.4
BraA09t42173Z Brassica rapa HOM05D000921 ORTHO05D004153 2.3e-242 842.4 697 64.6
Carub.0001s0220 Capsella rubella HOM05D000921 ORTHO05D004153 1.2e-241 840.1 696 65.1
ECA248G3113 Erigeron canadensis HOM05D000921 ORTHO05D004153 1.5e-241 839.7 693 65.1
Gohir.D08G205600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 7.5e-241 837.4 696 65.2
Nn1g00513 Nelumbo nucifera HOM05D000921 ORTHO05D004153 1.7e-240 836.3 695 63.7
DCAR_002700 Daucus carota HOM05D000921 ORTHO05D004153 4.9e-240 834.7 617 71.8
C05p01680 Brassica napus HOM05D000921 ORTHO05D004153 8.3e-240 833.9 701 64.1
BolC5t28947H Brassica oleracea HOM05D000921 ORTHO05D004153 8.3e-240 833.9 701 64.1
PGR044G0864 Punica granatum HOM05D000921 ORTHO05D004153 7.0e-239 830.9 702 64.2
A10p01690 Brassica napus HOM05D000921 ORTHO05D004153 2.1e-238 829.3 701 63.6
BraA10t42445Z Brassica rapa HOM05D000921 ORTHO05D004153 2.1e-238 829.3 701 63.6
EL10Ac5g10491 Beta vulgaris HOM05D000921 ORTHO05D004153 3.5e-238 828.6 694 65.3
Hund02865 Selenicereus undatus HOM05D000921 ORTHO05D004153 6.8e-234 814.3 695 63.2
SalBow4G3326 Salvia bowleyana HOM05D000921 ORTHO05D004153 2.6e-233 812.4 696 63.1
HanXRQChr06g0177821 Helianthus annuus HOM05D000921 ORTHO05D004153 2.9e-232 808.9 693 63.5
Haze_04641 Corylus avellana HOM05D000921 ORTHO05D004153 6.4e-232 807.7 627 69.1
AUR62032282 Chenopodium quinoa HOM05D000921 ORTHO05D004153 1.1e-231 807.0 690 63.2
Lsat_1_v5_gn_8_93941 Lactuca sativa HOM05D000921 ORTHO05D004153 5.4e-231 804.7 694 63.4
Sc05g0001320 Simmondsia chinensis HOM05D000921 ORTHO05D004153 5.1e-229 798.1 699 61.9
ATR0665G073 Amborella trichopoda HOM05D000921 ORTHO05D004153 1.5e-225 786.6 693 61.5
Carub.0006s3446 Capsella rubella HOM05D000921 ORTHO05D004153 1.5e-225 786.6 696 61.6
ECA236G3737 Erigeron canadensis HOM05D000921 ORTHO05D004153 2.0e-225 786.2 660 64.1
Lalb_Chr01g0019981 Lupinus albus HOM05D000921 ORTHO05D004153 1.7e-224 783.1 702 61.0
Sp6g02580 Schrenkiella parvula HOM05D000921 ORTHO05D004153 2.2e-224 782.7 696 60.8
AL6G50380 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 3.5e-222 775.4 708 60.2
Os03g0744675 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D004153 3.5e-222 775.4 692 61.7
arahy.Tifrunner.gnm1.ann1.EGZY1N Arachis hypogaea HOM05D000921 ORTHO05D004153 6.6e-221 771.2 694 60.4
arahy.Tifrunner.gnm1.ann1.IAH9UB Arachis hypogaea HOM05D000921 ORTHO05D004153 8.7e-221 770.8 694 60.2
Zm00001eb056940 Zea mays HOM05D000921 ORTHO05D004153 1.2e-219 766.9 692 61.0
AT4G02660 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 1.3e-216 756.9 709 58.1
HanXRQChr04g0113931 Helianthus annuus HOM05D000921 ORTHO05D004153 6.4e-216 754.6 673 61.7
BcaC01g06740 Brassica carinata HOM05D000921 ORTHO05D004153 2.1e-214 749.6 694 58.9
BcaB01g02482 Brassica carinata HOM05D000921 ORTHO05D004153 3.5e-214 748.8 697 58.7
CARHR250960 Cardamine hirsuta HOM05D000921 ORTHO05D004153 1.0e-213 747.3 745 56.1
BcaC07g42269 Brassica carinata HOM05D000921 ORTHO05D004153 1.3e-211 740.3 696 60.2
SHI10018 Sapria himalayana HOM05D000921 ORTHO05D004153 2.1e-211 739.6 707 58.4
CDE04G0357 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 9.9e-209 730.7 597 65.5
BcaB03g15744 Brassica carinata HOM05D000921 ORTHO05D004153 1.7e-208 729.9 634 62.0
Cpa.g.sc52.120 Carica papaya HOM05D000921 ORTHO05D004153 8.4e-208 727.6 661 63.1
Hund09551 Selenicereus undatus HOM05D000921 ORTHO05D004153 1.2e-201 707.2 622 61.9
Ah.11g050210 Amaranthus hybridus HOM05D000921 ORTHO05D004153 1.6e-190 670.2 673 57.2
PSO461G0055 Papaver somniferum HOM05D000921 ORTHO05D004153 1.3e-189 667.2 693 54.4
HPP92_021305 Vanilla planifolia HOM05D000921 ORTHO05D004153 7.9e-182 641.3 680 55.0
AUR62011970 Chenopodium quinoa HOM05D000921 ORTHO05D004153 8.5e-176 621.3 671 54.7
CDE10G0697 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 1.7e-168 597.0 677 50.7
Gohir.D08G055580 Gossypium hirsutum HOM05D000921 ORTHO05D004153 2.2e-160 570.1 429 70.9
SEGI_18450 Sequoiadendron giganteum HOM05D000921 ORTHO05D004153 4.2e-159 565.8 514 60.7
Actinidia09105 Actinidia chinensis HOM05D000921 ORTHO05D004153 8.8e-157 558.1 392 74.7
Mapoly0082s0083 Marchantia polymorpha HOM05D000921 ORTHO05D004153 7.8e-129 465.3 762 40.7
unitig_61.g26265 Utricularia gibba HOM05D000921 ORTHO05D004153 3.3e-127 459.9 557 49.4
SMO236G0048 Selaginella moellendorffii HOM05D000921 ORTHO05D004153 4.0e-125 453.0 697 41.3
Oeu002265.1 Olea europaea HOM05D000921 ORTHO05D004153 5.1e-120 436.0 521 51.1
AagrBONN_evm.TU.Sc2ySwM_117.1900 Anthoceros agrestis HOM05D000921 ORTHO05D004153 1.8e-117 427.6 592 44.1
Pp3c6_5700 Physcomitrium patens HOM05D000921 ORTHO05D004153 5.8e-108 396.0 702 37.9
Pp3c6_5706 Physcomitrium patens HOM05D000921 ORTHO05D004153 5.8e-108 396.0 702 37.9
Pp3c6_26100 Physcomitrium patens HOM05D000921 ORTHO05D004153 9.3e-106 388.7 818 35.2
Pp3c5_2890 Physcomitrium patens HOM05D000921 ORTHO05D004153 7.3e-103 379.0 812 34.9
Pp3c5_2897 Physcomitrium patens HOM05D000921 ORTHO05D004153 7.3e-103 379.0 812 34.9
Pp3c16_11700 Physcomitrium patens HOM05D000921 ORTHO05D004153 6.9e-101 372.5 724 35.8
Pp3c16_11705 Physcomitrium patens HOM05D000921 ORTHO05D004153 6.9e-101 372.5 724 35.8
CAN.G1355.10 Capsicum annuum HOM05D000921 ORTHO05D004153 1.4e-98 364.8 362 59.9
Hma1.2p1_0760F.1_g214090 Hydrangea macrophylla HOM05D000921 ORTHO05D004153 8.4e-83 312.4 200 81.0
arahy.Tifrunner.gnm1.ann1.BY50EL Arachis hypogaea HOM05D000921 ORTHO05D004153 1.5e-79 301.6 199 76.4
VMungo0720G2500 Vigna mungo HOM05D000921 ORTHO05D015533 1.6e-78 298.1 264 60.6
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 1.2e-76 292.0 807 31.0
Lsat_1_v5_gn_1_120240 Lactuca sativa HOM05D000921 ORTHO05D036458 9.8e-39 166.0 153 58.2
Lsat_1_v5_gn_1_73041 Lactuca sativa HOM05D002056 ORTHO05D036458 1.8e-32 145.2 135 58.5
SEGI_07899 Sequoiadendron giganteum HOM05D000921 ORTHO05D015533 1.2e-23 115.9 174 42.5
Lsat_1_v5_gn_1_120080 Lactuca sativa HOM05D001785 ORTHO05D001933 4.3e-18 97.4 112 50.0
Gohir.A08G045250 Gossypium hirsutum HOM05D000921 ORTHO05D015533 1.4e-16 92.4 52 84.6
Gohir.D08G055560 Gossypium hirsutum HOM05D000921 ORTHO05D015533 5.2e-16 90.5 52 82.7
FvH4_1g23851 Fragaria vesca HOM05D000921 ORTHO05D045821 6.8e-16 90.1 45 88.9
Glyma.10G030300 Glycine max HOM05D000921 ORTHO05D015037 3.4e-15 87.8 72 59.7
Psat7g116160 Pisum sativum HOM05D002786 ORTHO05D015037 4.4e-15 87.4 63 68.3
Psat0s5953g0080 Pisum sativum HOM05D001390 ORTHO05D015037 1.3e-14 85.9 51 80.4
C03p37690 Brassica napus HOM05D000921 ORTHO05D015533 1.4e-13 82.4 117 40.2
BolC3t16058H Brassica oleracea HOM05D000921 ORTHO05D015533 1.4e-13 82.4 117 40.2
BraA03t12270Z Brassica rapa HOM05D000921 ORTHO05D015533 3.2e-13 81.3 117 39.3
FvH4_3g33661 Fragaria vesca HOM05D000921 ORTHO05D198257 5.4e-13 80.5 44 79.5
A03p30910 Brassica napus HOM05D000921 ORTHO05D015533 1.2e-12 79.3 117 38.5
HanXRQChr02g0052171 Helianthus annuus HOM05D000921 ORTHO05D015533 1.6e-12 79.0 98 46.9
Gorai.012G075400 Gossypium raimondii HOM05D000921 ORTHO05D015533 1.7e-11 75.5 42 85.7
MD11G1312300 Malus domestica HOM05D000921 ORTHO05D045821 3.0e-11 74.7 39 82.1
VMungo1309G1394 Vigna mungo HOM05D001853 ORTHO05D015533 1.9e-10 72.0 77 48.1


User provided reference genes

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