Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 2.3e-290 1001.5 506 100.0
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.6e-187 659.8 510 69.6
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 8.2e-187 657.5 508 69.7
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.7e-182 642.5 508 68.3
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 3.0e-181 639.0 507 67.7
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 1.6e-179 633.3 508 66.5
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 1.3e-176 623.6 511 66.7
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 2.9e-176 622.5 508 64.6
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 6.5e-176 621.3 508 64.6
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 6.5e-176 621.3 510 65.9
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.1e-175 620.5 510 65.9
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.9e-175 619.8 506 66.2
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 1.9e-175 619.8 509 66.6
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 2.5e-175 619.4 508 64.6
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 2.5e-175 619.4 507 65.1
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 5.5e-175 618.2 508 65.0
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 7.2e-175 617.8 508 65.0
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 3.6e-174 615.5 506 64.2
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 6.1e-174 614.8 508 64.4
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 7.9e-174 614.4 508 64.4
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 2.3e-173 612.8 508 65.2
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 6.7e-173 611.3 508 64.2
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 1.1e-172 610.5 508 63.6
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 4.3e-172 608.6 509 65.2
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 4.3e-172 608.6 508 64.4
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 3.7e-171 605.5 508 64.0
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 3.7e-171 605.5 509 64.6
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.4e-170 603.6 508 62.2
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 1.8e-170 603.2 510 63.9
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.8e-170 603.2 505 63.8
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 3.1e-170 602.4 508 62.2
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 3.1e-170 602.4 508 64.0
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 6.9e-170 601.3 509 63.5
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 9.1e-170 600.9 508 62.2
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 9.1e-170 600.9 505 63.6
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 1.2e-169 600.5 507 63.1
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.0e-169 599.7 508 61.8
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 2.6e-169 599.4 471 68.4
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.6e-169 599.4 508 61.8
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 3.4e-169 599.0 506 63.0
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 3.4e-169 599.0 508 63.0
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 1.3e-168 597.0 508 62.8
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 2.2e-168 596.3 506 63.8
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 2.2e-168 596.3 508 61.0
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 2.9e-168 595.9 509 62.3
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.5e-167 592.8 507 63.5
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 4.2e-167 592.0 508 62.8
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 4.2e-167 592.0 507 62.3
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 5.5e-167 591.7 508 62.6
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 5.5e-167 591.7 508 62.2
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 7.2e-167 591.3 509 63.3
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.6e-166 590.1 508 62.4
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 2.1e-166 589.7 506 62.1
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 4.7e-166 588.6 509 61.9
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 6.1e-166 588.2 510 62.2
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 1.8e-165 586.6 512 62.3
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 1.8e-165 586.6 506 61.3
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 3.0e-165 585.9 512 62.1
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 3.0e-165 585.9 508 62.0
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 3.0e-165 585.9 509 61.9
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 8.8e-165 584.3 509 61.1
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 2.0e-164 583.2 510 62.0
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 7.4e-164 581.3 509 61.3
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 2.2e-163 579.7 512 61.3
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 1.4e-162 577.0 511 61.4
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 4.1e-162 575.5 511 61.8
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 7.0e-162 574.7 511 60.7
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 1.2e-161 573.9 513 60.6
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 2.0e-161 573.2 513 61.4
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 5.9e-161 571.6 507 60.0
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 5.9e-161 571.6 508 60.4
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 1.7e-160 570.1 511 61.6
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 5.0e-160 568.5 510 61.0
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 6.5e-160 568.2 509 60.3
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 3.2e-159 565.8 511 60.5
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 9.4e-159 564.3 508 60.0
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 9.4e-159 564.3 510 59.8
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.2e-158 563.9 509 59.5
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 2.7e-158 562.8 504 58.9
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 8.0e-158 561.2 509 59.1
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 8.0e-158 561.2 506 60.7
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.0e-157 560.8 509 60.3
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 1.4e-157 560.5 509 59.9
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.8e-157 560.1 509 59.9
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 4.0e-157 558.9 509 59.9
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 4.0e-157 558.9 510 59.6
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 1.5e-156 557.0 509 59.3
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.0e-156 556.6 508 59.3
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 3.3e-156 555.8 509 58.7
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 4.4e-156 555.4 508 57.7
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 5.7e-156 555.1 509 58.0
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 2.8e-155 552.7 513 59.3
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 2.8e-155 552.7 506 58.3
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 3.7e-155 552.4 506 57.7
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 4.8e-155 552.0 506 57.7
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 4.8e-155 552.0 506 57.7
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 6.3e-155 551.6 506 57.7
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 6.3e-155 551.6 508 57.9
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 8.2e-155 551.2 508 58.1
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 1.1e-154 550.8 506 57.5
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.1e-154 550.8 510 57.8
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.8e-154 550.1 505 57.8
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.4e-154 549.7 508 58.1
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 5.3e-154 548.5 506 57.5
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 9.1e-154 547.7 509 58.3
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 2.6e-153 546.2 506 57.7
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 5.9e-153 545.0 506 58.1
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 1.7e-152 543.5 509 57.2
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 2.9e-152 542.7 506 57.9
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 8.5e-152 541.2 513 57.9
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 2.1e-150 536.6 506 57.1
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 2.8e-147 526.2 505 55.0
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 4.1e-146 522.3 516 57.0
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 2.7e-145 519.6 499 58.1
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 8.3e-139 498.0 514 53.7
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 3.8e-136 489.2 505 51.7
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 1.1e-135 487.6 328 75.3
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 2.0e-132 476.9 334 72.8
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 5.7e-132 475.3 446 58.3
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 2.7e-129 466.5 402 62.4
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 8.9e-125 451.4 505 47.1
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 8.9e-125 451.4 444 57.2
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 1.2e-124 451.1 506 47.8
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 4.4e-124 449.1 335 68.4
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 5.2e-117 425.6 505 47.3
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 2.4e-114 416.8 515 47.8
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 7.8e-113 411.8 514 47.3
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 3.6e-110 402.9 514 46.5
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.4e-101 373.6 249 75.1
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 3.9e-88 329.7 339 53.1
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 5.8e-76 289.3 525 36.0
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 3.9e-64 250.0 340 45.3
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 6.7e-64 249.2 233 60.1
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 3.7e-62 243.4 277 50.5
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 1.0e-51 208.8 425 33.9
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 2.1e-41 174.5 277 41.2
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 4.4e-39 166.8 125 64.8
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 7.0e-37 159.5 351 35.6
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 2.2e-35 154.5 217 42.9
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 4.2e-34 150.2 209 45.0
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 8.3e-30 136.0 80 80.0
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 1.2e-28 132.1 83 78.3
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 3.8e-27 127.1 92 66.3
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 8.8e-24 115.9 184 43.5
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 3.7e-22 110.5 86 65.1
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 3.1e-21 107.5 88 61.4
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 9.5e-18 95.9 73 63.0
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 8.0e-17 92.8 73 58.9
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 1.4e-16 92.0 74 60.8
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 1.4e-16 92.0 74 60.8
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 1.5e-15 88.6 74 59.5
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 9.2e-13 79.3 60 60.0
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 2.3e-11 74.7 66 54.5
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 1.1e-10 72.4 65 53.8
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 1.1e-10 72.4 85 50.6
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 4.0e-08 63.9 182 30.8
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 4.0e-08 63.9 182 30.8
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 2.6e-07 61.2 182 30.2
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 1.7e-06 58.5 50 64.0
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 2.2e-06 58.2 50 62.0


User provided reference genes

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