Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 1.8e-136 489.2 232 100.0
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 2.0e-127 459.1 231 93.5
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 6.3e-94 347.8 220 74.5
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 1.8e-88 329.7 226 68.6
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.3e-88 329.3 228 69.3
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.9e-86 322.4 228 68.9
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 4.9e-86 321.6 220 67.3
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 2.4e-85 319.3 223 68.2
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 5.4e-85 318.2 220 67.7
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 2.0e-84 316.2 226 66.4
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 1.3e-83 313.5 226 66.4
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 2.3e-83 312.8 230 65.2
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 2.3e-83 312.8 224 65.6
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 6.6e-83 311.2 226 65.5
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 8.6e-83 310.8 226 65.5
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.9e-82 309.7 226 65.0
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 3.3e-82 308.9 226 64.6
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.2e-81 307.0 221 68.3
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 1.6e-81 306.6 224 63.8
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 2.1e-81 306.2 224 65.6
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 2.8e-81 305.8 224 64.3
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 2.8e-81 305.8 215 66.0
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 2.8e-81 305.8 224 65.2
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 3.6e-81 305.4 224 65.6
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 4.7e-81 305.1 228 65.4
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 8.0e-81 304.3 226 64.2
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 1.8e-80 303.1 228 62.7
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 3.1e-80 302.4 223 65.5
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 6.8e-80 301.2 226 63.3
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 6.8e-80 301.2 226 63.7
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 8.9e-80 300.8 224 63.4
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 1.2e-79 300.4 230 63.5
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 1.5e-79 300.1 223 64.1
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.3e-78 297.0 222 64.4
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 1.7e-78 296.6 226 61.9
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 1.7e-78 296.6 228 62.3
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.9e-78 295.8 228 63.2
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 8.3e-78 294.3 228 61.8
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 1.1e-77 293.9 227 63.9
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 1.4e-77 293.5 226 62.4
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 2.4e-77 292.7 226 65.5
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.2e-77 292.4 228 64.9
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 4.1e-77 292.0 226 61.1
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 9.2e-77 290.8 224 62.5
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 9.2e-77 290.8 228 64.9
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 9.2e-77 290.8 228 64.5
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 9.2e-77 290.8 228 64.9
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 1.2e-76 290.4 225 64.9
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 3.5e-76 288.9 226 62.4
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 4.6e-76 288.5 225 65.8
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.3e-75 287.0 222 60.8
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 1.3e-75 287.0 226 61.1
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 2.3e-75 286.2 223 61.9
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 3.0e-75 285.8 226 60.2
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 5.0e-75 285.0 223 62.3
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.6e-75 284.6 222 61.7
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 8.6e-75 284.3 219 60.7
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.5e-74 283.5 198 68.2
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 5.6e-74 281.6 223 61.4
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 5.6e-74 281.6 224 61.6
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 9.5e-74 280.8 226 63.3
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.1e-73 279.6 223 60.5
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 2.8e-73 279.3 226 63.7
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 6.2e-73 278.1 224 59.8
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 1.1e-72 277.3 226 59.3
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 1.4e-72 276.9 229 59.8
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 4.0e-72 275.4 220 58.2
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 5.2e-72 275.0 220 58.6
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 6.8e-72 274.6 226 58.8
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 8.9e-72 274.2 226 58.4
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 1.2e-71 273.9 220 58.6
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.2e-71 273.9 220 58.6
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 1.2e-71 273.9 218 58.7
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 1.5e-71 273.5 220 58.6
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 3.4e-71 272.3 220 57.3
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 7.5e-71 271.2 220 58.6
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 3.7e-70 268.9 220 58.2
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 1.1e-69 267.3 222 59.5
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.4e-69 266.9 222 59.5
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 2.4e-69 266.2 220 56.8
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 3.2e-69 265.8 220 55.9
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 5.4e-69 265.0 220 55.9
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.6e-68 263.5 213 60.1
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 2.1e-68 263.1 220 56.4
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 7.8e-68 261.2 220 55.9
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 3.0e-67 259.2 200 60.0
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 8.6e-67 257.7 228 55.7
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 2.5e-66 256.1 222 57.2
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 3.3e-66 255.8 229 57.2
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 4.3e-66 255.4 207 60.9
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 9.5e-66 254.2 222 56.8
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 1.2e-65 253.8 220 55.5
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.1e-64 250.8 218 58.7
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 2.4e-64 249.6 220 55.0
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 3.4e-55 219.2 219 52.1
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 7.6e-55 218.0 221 53.8
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.1e-53 214.2 222 48.6
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 2.7e-52 209.5 220 48.2
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 3.5e-52 209.1 103 89.3
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 1.3e-51 207.2 247 42.9
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 3.9e-51 205.7 241 45.2
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 3.9e-51 205.7 144 66.0
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 8.7e-51 204.5 243 46.1
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 1.5e-50 203.8 215 49.8
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 3.3e-50 202.6 241 44.8
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 2.4e-48 196.4 237 43.0
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 9.0e-48 194.5 249 43.8
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.5e-47 193.7 250 44.0
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 1.7e-46 190.3 232 42.7
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.4e-45 187.2 226 44.2
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 9.3e-45 184.5 221 48.0
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 9.3e-45 184.5 219 43.8
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.9e-44 181.4 226 44.2
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 1.3e-43 180.6 166 49.4
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 1.3e-43 180.6 166 49.4
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.3e-43 180.6 220 44.1
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 1.8e-43 180.3 227 42.7
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 2.3e-43 179.9 259 39.8
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 6.7e-43 178.3 231 43.3
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 8.7e-43 177.9 238 39.9
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 2.5e-42 176.4 259 38.6
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 5.6e-42 175.3 256 35.9
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 7.4e-42 174.9 225 41.3
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 1.3e-41 174.1 232 42.7
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 2.8e-41 172.9 147 56.5
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 3.7e-41 172.6 223 42.6
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.0e-39 166.8 225 45.3
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.6e-39 166.4 225 45.3
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 2.2e-38 163.3 189 44.4
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 4.9e-38 162.2 260 34.6
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 4.2e-37 159.1 260 34.6
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 7.1e-37 158.3 213 40.8
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 3.9e-35 152.5 152 46.1
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 6.7e-35 151.8 229 37.6
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.5e-34 150.6 204 38.7
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 1.9e-34 150.2 227 37.4
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 7.4e-34 148.3 185 40.0
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 9.6e-34 147.9 204 41.2
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 2.1e-33 146.7 223 39.0
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 6.2e-33 145.2 139 50.4
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.1e-32 144.4 252 34.9
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 1.1e-32 144.4 245 35.9
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 4.5e-31 139.0 154 44.8
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 1.0e-30 137.9 142 47.2
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 1.0e-30 137.9 151 47.0
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 8.4e-30 134.8 134 48.5
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 7.1e-29 131.7 124 54.0
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 2.1e-28 130.2 311 29.6
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.8e-27 127.1 134 48.5
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-26 124.4 134 47.0
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 2.5e-26 123.2 110 55.5
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 3.4e-23 112.8 147 41.5
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 1.9e-21 107.1 146 39.0
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 1.9e-21 107.1 146 39.0
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 7.2e-21 105.1 211 28.9
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 2.3e-19 100.1 126 37.3
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.9e-18 97.1 168 33.3
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.6e-15 86.7 74 54.1
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.7e-15 85.1 218 31.7
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 8.5e-14 81.6 154 31.8
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.2e-13 79.7 93 40.9
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 5.5e-13 79.0 243 28.4
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.0e-10 70.5 83 43.4
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 4.4e-10 69.3 71 45.1
Cfa026731 Carpinus fangiana HOM05D004427 ORTHO05D005381 7.0e-08 62.0 111 31.5


User provided reference genes

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