Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 2.1e-78 295.4 133 100.0
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 1.2e-52 209.9 103 89.3
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 2.6e-52 208.8 103 89.3
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 5.5e-34 147.9 102 65.7
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 8.0e-33 144.1 102 63.7
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 1.7e-30 136.3 107 58.9
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 1.7e-30 136.3 104 60.6
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 1.8e-29 132.9 104 57.7
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 3.1e-29 132.1 101 60.4
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 4.1e-29 131.7 104 59.6
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 4.1e-29 131.7 99 57.6
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 4.1e-29 131.7 104 56.7
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 5.3e-29 131.3 97 59.8
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 5.3e-29 131.3 107 55.1
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 5.3e-29 131.3 102 55.9
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 7.0e-29 131.0 104 57.7
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.6e-28 129.8 107 55.1
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 2.0e-28 129.4 104 57.7
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 2.0e-28 129.4 99 58.6
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.7e-28 129.0 106 56.6
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 3.5e-28 128.6 107 54.2
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 7.7e-28 127.5 107 56.1
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 2.2e-27 125.9 104 52.9
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 2.9e-27 125.6 101 56.4
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.9e-27 125.6 105 56.2
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 5.0e-27 124.8 103 56.3
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 6.5e-27 124.4 107 54.2
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 8.5e-27 124.0 104 55.8
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 8.5e-27 124.0 104 55.8
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 8.5e-27 124.0 104 55.8
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.1e-26 123.6 102 52.9
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 1.5e-26 123.2 108 51.9
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 2.5e-26 122.5 102 52.0
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 2.5e-26 122.5 104 51.9
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 2.5e-26 122.5 106 53.8
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 3.2e-26 122.1 108 52.8
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 3.2e-26 122.1 105 53.3
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 5.5e-26 121.3 104 52.9
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 7.2e-26 120.9 102 52.9
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 7.2e-26 120.9 104 53.8
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 7.2e-26 120.9 102 52.0
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 7.2e-26 120.9 131 48.1
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 1.2e-25 120.2 108 50.9
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 2.1e-25 119.4 102 52.0
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 2.1e-25 119.4 102 52.0
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 2.1e-25 119.4 102 52.0
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 2.1e-25 119.4 104 51.9
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 2.7e-25 119.0 106 50.9
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 3.6e-25 118.6 102 49.0
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 3.6e-25 118.6 107 52.3
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 3.6e-25 118.6 106 50.9
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 6.1e-25 117.9 103 53.4
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 8.0e-25 117.5 104 50.0
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 8.0e-25 117.5 107 49.5
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 1.4e-24 116.7 100 52.0
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 1.8e-24 116.3 100 52.0
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 2.3e-24 115.9 97 55.7
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 2.3e-24 115.9 100 51.0
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 4.0e-24 115.2 100 54.0
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 4.0e-24 115.2 104 51.0
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 5.2e-24 114.8 108 51.9
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 6.8e-24 114.4 100 55.0
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 6.8e-24 114.4 100 49.0
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 8.8e-24 114.0 106 50.9
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 8.8e-24 114.0 104 51.9
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 8.8e-24 114.0 109 52.3
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 1.2e-23 113.6 102 49.0
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 1.2e-23 113.6 104 50.0
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 1.5e-23 113.2 107 49.5
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 2.6e-23 112.5 102 46.1
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.6e-23 112.5 108 50.9
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.6e-23 112.5 108 50.9
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 3.4e-23 112.1 102 50.0
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 3.4e-23 112.1 100 50.0
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.4e-23 111.7 108 50.9
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 4.4e-23 111.7 100 49.0
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 5.7e-23 111.3 102 48.0
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.5e-23 110.9 108 50.9
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 9.8e-23 110.5 107 47.7
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.3e-22 110.2 105 52.4
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 1.3e-22 110.2 102 44.1
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.3e-22 110.2 107 46.7
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.2e-22 109.4 103 48.5
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 2.2e-22 109.4 108 50.9
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 2.8e-22 109.0 101 50.5
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 2.8e-22 109.0 99 50.5
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 3.7e-22 108.6 105 51.4
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 4.8e-22 108.2 102 45.1
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.1e-21 107.1 94 55.3
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 1.4e-21 106.7 103 48.5
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 3.1e-21 105.5 100 49.0
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 5.4e-21 104.8 103 45.6
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 5.4e-21 104.8 101 49.5
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 7.0e-21 104.4 102 48.0
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 1.6e-20 103.2 109 45.0
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.0e-20 102.8 103 47.6
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 1.7e-19 99.8 102 42.2
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 1.7e-19 99.8 102 42.2
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 1.7e-19 99.8 102 42.2
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 1.7e-19 99.8 99 47.5
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 3.3e-18 95.5 104 47.1
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.5e-18 94.7 131 38.2
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 7.2e-18 94.4 106 45.3
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-17 93.6 102 47.1
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 2.1e-17 92.8 107 45.8
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.3e-16 89.4 135 36.3
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 4.0e-16 88.6 133 36.8
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 8.9e-16 87.4 131 36.6
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 5.7e-15 84.7 112 38.4
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 7.5e-15 84.3 108 42.6
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 9.8e-15 84.0 108 41.7
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 1.3e-14 83.6 98 44.9
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.3e-14 83.6 128 38.3
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.9e-14 81.6 96 43.8
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 4.9e-14 81.6 101 44.6
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 6.3e-14 81.3 86 43.0
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 1.1e-13 80.5 83 44.6
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.8e-13 79.7 139 31.7
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 2.4e-13 79.3 90 41.1
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 2.4e-13 79.3 125 35.2
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 2.4e-13 79.3 120 35.8
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 3.2e-13 79.0 102 39.2
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.2e-13 79.0 89 44.9
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 3.2e-13 79.0 135 32.6
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 5.4e-13 78.2 79 46.8
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.2e-12 77.0 108 41.7
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.2e-12 77.0 108 41.7
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 5.9e-12 74.7 121 34.7
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 5.9e-12 74.7 107 39.3
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 1.0e-11 73.9 114 33.3
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 1.7e-11 73.2 141 31.2
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 2.3e-11 72.8 108 42.6
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 3.9e-11 72.0 122 36.1
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 5.0e-11 71.6 129 31.8
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 1.9e-10 69.7 76 44.7
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.5e-10 69.3 124 32.3
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.5e-10 69.3 136 33.8
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 2.5e-10 69.3 85 37.6
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 7.3e-10 67.8 124 31.5
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 7.3e-10 67.8 97 36.1
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 6.1e-09 64.7 117 35.0
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 5.2e-08 61.6 124 30.6
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 1.2e-07 60.5 50 58.0
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.6e-07 59.3 50 52.0
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 4.4e-07 58.5 59 49.2
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.3e-06 57.0 95 33.7
Prupe.1G358400 Prunus persica HOM05D001732 ORTHO05D006715 4.9e-06 55.1 29 75.9
Sed0004106 Sechium edule HOM05D001732 ORTHO05D006715 6.4e-06 54.7 29 79.3
Gohir.A07G233500 Gossypium hirsutum HOM05D001732 ORTHO05D006715 8.3e-06 54.3 29 75.9


User provided reference genes

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