Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 8.7e-273 943.0 455 100.0
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 2.5e-211 738.8 398 85.2
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 5.8e-208 727.6 398 84.7
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 1.9e-206 722.6 405 82.2
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 3.2e-206 721.8 403 83.6
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 6.0e-205 717.6 445 77.3
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 7.8e-205 717.2 400 83.5
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 6.6e-204 714.1 404 81.7
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 1.9e-203 712.6 398 81.7
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 1.9e-203 712.6 398 82.9
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 3.3e-203 711.8 415 80.2
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 1.2e-202 709.9 396 83.1
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 2.1e-202 709.1 415 79.8
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 3.6e-202 708.4 399 81.7
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 3.6e-202 708.4 452 74.6
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 4.7e-202 708.0 398 81.2
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 4.0e-201 704.9 399 82.0
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 4.0e-201 704.9 396 82.1
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 6.8e-201 704.1 396 83.1
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 8.9e-201 703.7 471 73.0
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 1.2e-200 703.4 398 82.2
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 2.0e-200 702.6 397 81.4
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 3.4e-200 701.8 396 82.1
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 2.9e-199 698.7 426 77.9
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 2.9e-199 698.7 406 78.3
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 4.9e-199 698.0 408 78.9
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 3.2e-198 695.3 406 78.6
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 3.2e-198 695.3 398 81.9
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 2.7e-197 692.2 397 79.8
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 2.7e-197 692.2 400 78.2
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 4.6e-197 691.4 399 79.4
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 4.6e-197 691.4 396 79.8
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 6.0e-197 691.0 396 81.1
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 6.0e-197 691.0 396 81.1
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 7.8e-197 690.6 398 79.4
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 1.0e-196 690.3 407 78.6
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 3.0e-196 688.7 409 77.8
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 3.9e-196 688.3 397 79.3
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 1.9e-195 686.0 399 78.7
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 7.3e-195 684.1 406 77.1
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 2.1e-194 682.6 408 78.2
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 3.6e-194 681.8 399 77.7
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 8.1e-194 680.6 399 78.4
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 1.4e-193 679.9 406 76.8
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 1.8e-193 679.5 401 77.6
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 4.0e-193 678.3 398 77.9
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 4.0e-193 678.3 393 78.9
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 4.0e-193 678.3 399 77.2
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 2.6e-192 675.6 399 77.2
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 1.7e-191 672.9 453 72.0
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 3.8e-191 671.8 419 75.2
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 1.9e-190 669.5 407 75.7
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 4.2e-190 668.3 400 77.8
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 9.3e-190 667.2 398 77.1
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 7.8e-189 664.1 464 70.0
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 1.3e-188 663.3 398 77.1
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 8.7e-188 660.6 397 76.1
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 8.7e-188 660.6 397 76.1
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 2.5e-187 659.1 399 75.7
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 3.3e-187 658.7 414 75.6
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 9.6e-187 657.1 407 74.4
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 9.6e-187 657.1 392 77.8
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 2.8e-186 655.6 408 74.0
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 4.0e-185 651.7 411 73.7
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 1.5e-184 649.8 399 75.2
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 2.0e-184 649.4 403 74.7
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 1.3e-183 646.7 404 74.3
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 2.2e-183 646.0 405 74.3
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 2.2e-183 646.0 404 74.3
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 2.2e-183 646.0 404 74.3
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 3.8e-183 645.2 404 74.3
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 4.9e-183 644.8 408 74.0
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 8.4e-183 644.0 400 74.2
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 8.4e-183 644.0 403 73.9
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 1.1e-182 643.7 420 72.4
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 1.9e-182 642.9 400 77.2
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 1.2e-181 640.2 415 73.7
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 4.6e-181 638.3 408 73.0
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 6.0e-181 637.9 400 71.8
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 1.3e-180 636.7 396 75.5
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 3.0e-180 635.6 449 68.4
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 3.0e-180 635.6 410 71.7
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 6.7e-180 634.4 407 72.5
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 1.1e-179 633.6 393 75.6
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.1e-179 633.6 398 71.1
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.1e-178 629.4 445 66.7
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.0e-176 622.9 400 70.8
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 1.4e-174 616.7 357 80.4
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 3.5e-173 612.1 414 72.5
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 6.0e-173 611.3 385 71.9
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 6.7e-172 607.8 444 64.2
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 3.3e-171 605.5 411 70.8
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 1.6e-170 603.2 471 60.3
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 2.1e-170 602.8 392 71.2
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 3.4e-168 595.5 357 78.7
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 3.4e-168 595.5 375 75.5
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 4.5e-168 595.1 407 72.2
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 5.1e-164 581.6 451 62.7
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 4.3e-163 578.6 408 65.9
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 3.1e-161 572.4 356 73.3
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 4.2e-158 562.0 315 83.5
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 9.3e-158 560.8 353 70.0
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 3.3e-155 552.4 394 67.0
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 3.2e-150 535.8 307 80.1
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 1.0e-148 530.8 307 79.8
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 2.4e-129 466.5 365 61.9
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 2.5e-126 456.4 249 86.7
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 6.8e-124 448.4 406 52.2
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 9.8e-123 444.5 395 53.4
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 8.3e-122 441.4 408 53.2
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 2.4e-121 439.9 407 51.6
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 7.0e-121 438.3 251 82.9
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 2.8e-109 399.8 435 46.0
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 9.5e-102 374.8 217 82.5
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 9.9e-91 338.2 244 61.9
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 8.1e-77 292.0 186 66.7
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 4.2e-73 279.6 160 76.9
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 3.5e-72 276.6 165 78.8
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 2.4e-68 263.8 206 59.7
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 2.0e-67 260.8 150 82.7
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 5.6e-62 242.7 159 70.4
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 5.5e-57 226.1 129 74.4
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 7.9e-48 195.7 118 73.7
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 2.5e-33 147.5 459 29.0
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 6.1e-32 142.9 383 30.0
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 9.1e-28 129.0 86 73.3
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 2.6e-22 110.9 346 27.5
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 5.7e-22 109.8 356 29.8
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 6.8e-15 86.3 55 78.2
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 3.4e-14 84.0 80 61.2
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 8.5e-10 69.3 61 55.7
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 8.5e-10 69.3 61 55.7
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 8.5e-10 69.3 91 40.7
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 3.2e-09 67.4 55 52.7
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 9.4e-09 65.9 166 31.9
Os07g0660400 Oryza sativa ssp. japonica HOM05D005787 ORTHO05D007011 1.4e-07 62.0 46 54.3
Rhsim13G0060400 Rhododendron simsii HOM05D001179 ORTHO05D339156 2.6e-06 57.8 48 58.3


User provided reference genes

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