Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C11T12 Lonicera japonica HOM05D006460 ORTHO05D008143 6.1e-285 983.4 472 100.0
TAR362G0080 Trochodendron aralioides HOM05D006460 ORTHO05D008143 2.1e-184 649.4 478 68.0
Duzib138G1376 Durio zibethinus HOM05D006460 ORTHO05D008143 7.4e-182 641.0 467 67.5
Prupe.3G004500 Prunus persica HOM05D006460 ORTHO05D008143 1.3e-181 640.2 472 68.4
QL12p034319 Quercus lobata HOM05D006460 ORTHO05D008143 2.8e-181 639.0 470 66.6
GSVIVG01028196001 Vitis vinifera HOM05D006460 ORTHO05D008143 1.1e-180 637.1 470 68.5
Potri.002G189800 Populus trichocarpa HOM05D006460 ORTHO05D008143 1.5e-179 633.3 469 67.6
Sabra02G0165800 Salix brachista HOM05D006460 ORTHO05D008143 5.8e-179 631.3 469 67.0
CSS0037090 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 8.4e-178 627.5 479 65.3
Gorai.001G146600 Gossypium raimondii HOM05D006460 ORTHO05D008143 5.5e-177 624.8 467 65.5
Gohir.D07G134900 Gossypium hirsutum HOM05D006460 ORTHO05D008143 1.6e-176 623.2 467 65.3
DCAR_012316 Daucus carota HOM05D006460 ORTHO05D008143 3.5e-176 622.1 471 65.6
Solyc01g068050.3 Solanum lycopersicum HOM05D006460 ORTHO05D008143 3.5e-176 622.1 466 66.1
PGSC0003DMG400005211 Solanum tuberosum HOM05D006460 ORTHO05D008143 7.9e-176 620.9 466 65.9
CAN.G100.27 Capsicum annuum HOM05D006460 ORTHO05D008143 1.3e-175 620.2 468 65.4
FvH4_1g26500 Fragaria vesca HOM05D006460 ORTHO05D008143 6.7e-175 617.8 479 64.9
COL.COLO4_23162 Corchorus olitorius HOM05D006460 ORTHO05D008143 1.9e-174 616.3 467 65.1
MD09G1293200 Malus domestica HOM05D006460 ORTHO05D008143 3.3e-174 615.5 472 65.9
FAN28G1427 Fragaria x ananassa HOM05D006460 ORTHO05D008143 4.3e-174 615.1 477 64.8
Cpa.g.sc543.2 Carica papaya HOM05D006460 ORTHO05D008143 1.6e-173 613.2 468 65.8
Haze_05122 Corylus avellana HOM05D006460 ORTHO05D008143 2.2e-173 612.8 472 64.0
Nn4g25417 Nelumbo nucifera HOM05D006460 ORTHO05D008143 2.8e-173 612.5 477 64.6
vmacro02372 Vaccinium macrocarpon HOM05D006460 ORTHO05D008143 2.8e-173 612.5 527 60.3
RcHm_v2.0_Chr3g0486571 Rosa chinensis HOM05D006460 ORTHO05D008143 4.8e-173 611.7 473 64.9
Atru.chr5.915 Acer truncatum HOM05D006460 ORTHO05D008143 5.3e-172 608.2 466 64.4
Actinidia21358 Actinidia chinensis HOM05D006460 ORTHO05D008143 1.3e-170 603.6 478 65.1
CiPaw.04G089700 Carya illinoinensis HOM05D006460 ORTHO05D008143 1.3e-170 603.6 473 62.4
Sc17g0000180 Simmondsia chinensis HOM05D006460 ORTHO05D008143 1.7e-170 603.2 464 64.7
Eucgr.H00886 Eucalyptus grandis HOM05D006460 ORTHO05D008143 2.2e-170 602.8 467 66.0
CANSAT56G1882 Cannabis sativa HOM05D006460 ORTHO05D008143 2.9e-170 602.4 469 66.3
Oeu002575.1 Olea europaea HOM05D006460 ORTHO05D008143 1.9e-169 599.7 467 64.5
Sed0027463 Sechium edule HOM05D006460 ORTHO05D008143 2.1e-168 596.3 469 63.3
Ciclev10001046m.g Citrus clementina HOM05D006460 ORTHO05D008143 6.1e-168 594.7 467 63.8
TWI14G0400 Tripterygium wilfordii HOM05D006460 ORTHO05D008143 6.7e-167 591.3 472 63.1
ClCG09G004700 Citrullus lanatus HOM05D006460 ORTHO05D008143 8.8e-167 590.9 479 61.6
PGR083G0788 Punica granatum HOM05D006460 ORTHO05D008143 4.3e-166 588.6 470 63.4
Thecc.01G322200 Theobroma cacao HOM05D006460 ORTHO05D008143 1.7e-165 586.6 474 63.7
SalBow6G2760 Salvia bowleyana HOM05D006460 ORTHO05D008143 5.3e-164 581.6 470 62.3
Manes.05G010900 Manihot esculenta HOM05D006460 ORTHO05D008143 1.5e-163 580.1 464 63.8
Cc01_g21920 Coffea canephora HOM05D006460 ORTHO05D008143 2.0e-163 579.7 479 62.6
Migut.D00030 Erythranthe guttata HOM05D006460 ORTHO05D008143 1.1e-161 573.9 473 62.4
Gohir.A07G130500 Gossypium hirsutum HOM05D006460 ORTHO05D008143 1.6e-160 570.1 467 61.7
Nitab4.5_0000222g0270 Nicotiana tabacum HOM05D006460 ORTHO05D008143 3.6e-160 568.9 499 59.5
C03p38430 Brassica napus HOM05D006460 ORTHO05D008143 4.7e-160 568.5 471 59.9
BcaB01g02385 Brassica carinata HOM05D006460 ORTHO05D008143 6.1e-160 568.2 473 59.6
A03p31440 Brassica napus HOM05D006460 ORTHO05D008143 7.9e-160 567.8 471 59.7
BraA03t12325Z Brassica rapa HOM05D006460 ORTHO05D008143 1.0e-159 567.4 471 59.7
BcaC01g06799 Brassica carinata HOM05D006460 ORTHO05D008143 5.1e-159 565.1 471 59.0
BolC3t16117H Brassica oleracea HOM05D006460 ORTHO05D008143 5.1e-159 565.1 471 59.0
MSTRG.21724 Avicennia marina HOM05D006460 ORTHO05D008143 8.8e-159 564.3 468 62.6
Sp6g01720 Schrenkiella parvula HOM05D006460 ORTHO05D008143 2.0e-158 563.1 478 59.4
Aqoxy5G02768 Aquilegia oxysepala HOM05D006460 ORTHO05D008143 2.6e-158 562.8 468 59.8
AUR62024570 Chenopodium quinoa HOM05D006460 ORTHO05D008143 3.3e-158 562.4 468 60.5
Lj2g0013221 Lotus japonicus HOM05D006460 ORTHO05D008143 4.4e-158 562.0 477 59.3
Lalb_Chr17g0338451 Lupinus albus HOM05D006460 ORTHO05D008143 2.2e-157 559.7 468 60.0
FAN19G0891 Fragaria x ananassa HOM05D006460 ORTHO05D008143 6.3e-157 558.1 479 61.0
FAN26G0500 Fragaria x ananassa HOM05D006460 ORTHO05D008143 6.3e-157 558.1 477 61.4
Glyma.07G170000 Glycine max HOM05D006460 ORTHO05D008143 1.4e-156 557.0 472 59.3
VMungo1215G1636 Vigna mungo HOM05D006460 ORTHO05D008143 1.4e-156 557.0 469 59.7
HanXRQChr13g0414441 Helianthus annuus HOM05D006460 ORTHO05D008143 4.1e-156 555.4 464 61.4
AUR62011736 Chenopodium quinoa HOM05D006460 ORTHO05D008143 6.9e-156 554.7 469 59.9
CARHR249840 Cardamine hirsuta HOM05D006460 ORTHO05D008143 9.1e-156 554.3 473 58.4
PSO357G0369 Papaver somniferum HOM05D006460 ORTHO05D008143 9.1e-156 554.3 471 60.7
THA.LOC104801320 Tarenaya hassleriana HOM05D006460 ORTHO05D008143 1.2e-155 553.9 467 59.3
Thhalv10028644m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 7.7e-155 551.2 474 57.6
Thhalv10028645m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 7.7e-155 551.2 474 57.6
AL6G51420 Arabidopsis lyrata HOM05D006460 ORTHO05D008143 1.3e-154 550.4 476 59.2
AT4G01880 Arabidopsis thaliana HOM05D006460 ORTHO05D008143 1.7e-154 550.1 477 58.5
Phvul.003G019300 Phaseolus vulgaris HOM05D006460 ORTHO05D008143 1.7e-154 550.1 473 59.4
Rhsim13G0001100 Rhododendron simsii HOM05D006460 ORTHO05D008143 6.5e-154 548.1 423 66.9
Ca_12543_v3 Cicer arietinum L. HOM05D006460 ORTHO05D008143 5.5e-153 545.0 472 58.3
Lsat_1_v5_gn_8_167341 Lactuca sativa HOM05D006460 ORTHO05D008143 9.4e-153 544.3 463 61.1
SGA_v2.0_scaffold417G51258 Striga asiatica HOM05D006460 ORTHO05D008143 4.7e-152 542.0 471 59.4
Cfa004883 Carpinus fangiana HOM05D006460 ORTHO05D008143 1.4e-151 540.4 428 63.8
Carub.0006s3536 Capsella rubella HOM05D006460 ORTHO05D008143 5.2e-151 538.5 472 57.4
Hund09677 Selenicereus undatus HOM05D006460 ORTHO05D008143 2.6e-150 536.2 468 59.0
Aa31LG5G1480 Aethionema arabicum HOM05D006460 ORTHO05D008143 7.4e-150 534.6 499 55.7
arahy.Tifrunner.gnm1.ann1.N25L3F Arachis hypogaea HOM05D006460 ORTHO05D008143 5.3e-148 528.5 501 55.5
CDE08G1018 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 5.3e-148 528.5 470 57.7
Psat6g046360 Pisum sativum HOM05D006460 ORTHO05D008143 7.0e-148 528.1 474 56.8
Medtr1g032120 Medicago truncatula HOM05D006460 ORTHO05D008143 1.6e-147 526.9 469 56.3
TPR.G36866 Trifolium pratense HOM05D006460 ORTHO05D008143 2.6e-147 526.2 508 53.5
ATR0796G118 Amborella trichopoda HOM05D006460 ORTHO05D008143 3.5e-147 525.8 489 54.8
arahy.Tifrunner.gnm1.ann1.R72PZK Arachis hypogaea HOM05D006460 ORTHO05D008143 1.3e-146 523.9 508 54.5
EL10As5g23582 Beta vulgaris HOM05D006460 ORTHO05D008143 1.1e-140 504.2 477 56.8
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 5.0e-138 495.4 435 59.1
Nitab4.5_0002994g0020 Nicotiana tabacum HOM05D006460 ORTHO05D008143 8.5e-138 494.6 494 54.9
CSS0008981 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 1.1e-137 494.2 357 68.6
MELO3C023610.2 Cucumis melo HOM05D006460 ORTHO05D008143 3.6e-136 489.2 452 55.1
PSO384G3244 Papaver somniferum HOM05D006460 ORTHO05D008143 5.7e-134 481.9 395 62.3
PSO170G6216 Papaver somniferum HOM05D006460 ORTHO05D008143 1.7e-133 480.3 395 62.5
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 1.6e-131 473.8 337 70.9
CsaV3_7G030430 Cucumis sativus L. HOM05D006460 ORTHO05D008143 2.1e-128 463.4 360 65.0
Eucgr.L00887 Eucalyptus grandis HOM05D006460 ORTHO05D008143 2.8e-128 463.0 352 66.8
HPP92_010877 Vanilla planifolia HOM05D000746 ORTHO05D000573 1.2e-126 457.6 464 50.0
Ah.11g045760 Amaranthus hybridus HOM05D006460 ORTHO05D008143 1.3e-122 444.1 467 52.2
Zm00001eb211340 Zea mays HOM05D006460 ORTHO05D008143 4.0e-111 406.0 380 53.4
Sopen01g029980 Solanum pennellii HOM05D006460 ORTHO05D008143 9.2e-108 394.8 291 68.4
Pp3c21_16200 Physcomitrium patens HOM05D006460 ORTHO05D008143 9.5e-105 384.8 515 40.0
AagrBONN_evm.TU.Sc2ySwM_228.322 Anthoceros agrestis HOM05D006460 ORTHO05D008143 6.2e-104 382.1 477 42.8
Peaxi162Scf00919g00047 Petunia axillaris HOM05D006460 ORTHO05D008143 8.1e-104 381.7 355 58.6
AagrBONN_evm.TU.Sc2ySwM_344.3324 Anthoceros agrestis HOM05D006460 ORTHO05D008143 7.1e-100 368.6 476 41.8
Mapoly0095s0050 Marchantia polymorpha HOM05D006460 ORTHO05D008143 3.3e-97 359.8 490 40.8
MBI18_g28900_MAGBIO Magnolia biondii HOM05D006460 ORTHO05D008143 3.8e-93 346.3 441 45.1
SMO010G0007 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 3.4e-86 323.2 470 37.4
unitig_578.g16638 Utricularia gibba HOM05D006460 ORTHO05D008143 1.7e-77 294.3 467 39.0
Os03g0833200 Oryza sativa ssp. japonica HOM05D006460 ORTHO05D008143 1.2e-59 235.0 261 48.7
MCO13G012 Micromonas commoda HOM05D006460 ORTHO05D008143 2.0e-49 201.1 515 28.5
SEGI_40178 Sequoiadendron giganteum HOM05D006460 ORTHO05D008143 3.3e-49 200.3 278 42.8
MD17G1281000 Malus domestica HOM05D006460 ORTHO05D008143 1.0e-42 178.7 236 44.9
AUR62029044 Chenopodium quinoa HOM05D006460 ORTHO05D008143 3.9e-42 176.8 159 61.0
AUR62036055 Chenopodium quinoa HOM05D006460 ORTHO05D008143 3.3e-41 173.7 159 59.1
SMO339G0034 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 8.2e-40 169.1 232 39.7
PRCOL_00001885 Prasinoderma coloniale HOM05D006460 ORTHO05D008143 1.4e-39 168.3 488 28.5
CBR_g49426 Chara braunii HOM05D006460 ORTHO05D008143 3.8e-21 107.1 91 50.5
QL04p085746 Quercus lobata HOM05D006460 ORTHO05D008143 7.2e-20 102.8 109 49.5
AagrBONN_evm.TU.Sc2ySwM_228.45 Anthoceros agrestis HOM05D006460 ORTHO05D008143 2.1e-19 101.3 239 32.2
RcHm_v2.0_Chr7g0232271 Rosa chinensis HOM05D006460 ORTHO05D008143 1.2e-17 95.5 82 68.3
AUR62007801 Chenopodium quinoa HOM05D006460 ORTHO05D008143 2.2e-16 91.3 85 57.6
Cre16.g654992 Chlamydomonas reinhardtii HOM05D006460 ORTHO05D008143 8.3e-16 89.4 380 23.2
Hund09679 Selenicereus undatus HOM05D006460 ORTHO05D008143 1.2e-14 85.5 111 42.3
QL05p033637 Quercus lobata HOM05D000101 ORTHO05D000089 3.6e-11 73.9 68 54.4
CSS0016884 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 2.3e-10 71.2 66 53.0
CSS0037496 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 2.3e-10 71.2 66 53.0
CDE02G3709 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 6.3e-08 63.2 78 42.3
AUR62043166 Chenopodium quinoa HOM05D006460 ORTHO05D008143 3.2e-07 60.8 68 52.9
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 3.5e-06 57.4 45 53.3


User provided reference genes

Program Settings