Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C1140G9 Lonicera japonica HOM05D000604 ORTHO05D000990 3.4e-133 478.4 252 100.0
Potri.001G081600 Populus trichocarpa HOM05D000604 ORTHO05D000990 5.2e-33 145.6 314 40.4
Dinv00508 Davidia involucrata HOM05D000604 ORTHO05D000990 1.7e-31 140.6 305 39.3
Haze_20822 Corylus avellana HOM05D000604 ORTHO05D000990 1.1e-30 137.9 312 37.5
Potri.003G148800 Populus trichocarpa HOM05D000604 ORTHO05D000990 5.4e-30 135.6 308 39.0
QL09p051250 Quercus lobata HOM05D000604 ORTHO05D000990 5.4e-30 135.6 315 37.1
Sabra01G0058800 Salix brachista HOM05D000604 ORTHO05D000990 7.0e-30 135.2 315 38.4
Thecc.06G135500 Theobroma cacao HOM05D000604 ORTHO05D000990 1.0e-28 131.3 315 38.1
CiPaw.09G150500 Carya illinoinensis HOM05D000604 ORTHO05D000990 1.7e-28 130.6 316 37.7
Sabra03G0108300 Salix brachista HOM05D000604 ORTHO05D000990 6.6e-28 128.6 305 37.4
CiPaw.10G111800 Carya illinoinensis HOM05D000604 ORTHO05D000990 2.5e-27 126.7 313 36.7
Gohir.D10G048200 Gossypium hirsutum HOM05D000604 ORTHO05D000990 3.3e-27 126.3 315 37.5
Gorai.011G051300 Gossypium raimondii HOM05D000604 ORTHO05D000990 3.3e-27 126.3 315 37.5
TWI09G1628 Tripterygium wilfordii HOM05D000604 ORTHO05D000990 4.3e-27 125.9 315 36.5
Gohir.A10G047001 Gossypium hirsutum HOM05D000604 ORTHO05D000990 2.1e-26 123.6 315 37.5
Cpa.g.sc882.2 Carica papaya HOM05D000604 ORTHO05D000990 4.7e-26 122.5 316 37.7
TWI53G1067 Tripterygium wilfordii HOM05D000604 ORTHO05D000990 6.1e-26 122.1 312 35.9
Duzib235G1210 Durio zibethinus HOM05D000604 ORTHO05D000990 5.2e-25 119.0 316 36.1
TWI73G0710 Tripterygium wilfordii HOM05D000604 ORTHO05D000990 6.8e-25 118.6 321 35.8
Cfa017348 Carpinus fangiana HOM05D000604 ORTHO05D000990 1.2e-24 117.9 302 35.8
Duzib192G0430 Durio zibethinus HOM05D000604 ORTHO05D000990 7.5e-24 115.2 316 36.4
VMungo0251G0051 Vigna mungo HOM05D000604 ORTHO05D000990 1.3e-23 114.4 322 35.1
TAR625G0165 Trochodendron aralioides HOM05D000604 ORTHO05D000990 3.7e-23 112.8 323 34.4
arahy.Tifrunner.gnm1.ann1.FFMP8K Arachis hypogaea HOM05D000604 ORTHO05D000990 4.9e-23 112.5 314 36.0
Actinidia09673 Actinidia chinensis HOM05D000604 ORTHO05D000990 8.3e-23 111.7 321 37.1
Phvul.003G138600 Phaseolus vulgaris HOM05D000604 ORTHO05D000990 1.1e-22 111.3 316 35.4
Atru.chr10.624 Acer truncatum HOM05D000604 ORTHO05D000990 4.1e-22 109.4 288 35.4
Gohir.D09G076400 Gossypium hirsutum HOM05D000604 ORTHO05D000990 4.1e-22 109.4 317 36.9
Gorai.006G091600 Gossypium raimondii HOM05D000604 ORTHO05D000990 5.4e-22 109.0 317 37.5
Ciclev10018136m.g Citrus clementina HOM05D000604 ORTHO05D000990 1.2e-21 107.8 314 36.9
Lj4g0005998 Lotus japonicus HOM05D000604 ORTHO05D000990 3.5e-21 106.3 307 34.9
Glyma.20G023800 Glycine max HOM05D000604 ORTHO05D000990 4.6e-21 105.9 314 34.7
Gohir.A09G076500 Gossypium hirsutum HOM05D000604 ORTHO05D000990 4.6e-21 105.9 317 36.9
Glyma.20G023500 Glycine max HOM05D000604 ORTHO05D000990 1.3e-20 104.4 314 34.4
Dinv42501 Davidia involucrata HOM05D000604 ORTHO05D000990 2.3e-20 103.6 255 38.0
Glyma.07G223700 Glycine max HOM05D000604 ORTHO05D000990 6.6e-20 102.1 314 35.0
Medtr4g083690 Medicago truncatula HOM05D000604 ORTHO05D000990 2.5e-19 100.1 312 35.3
ClCG01G008990 Citrullus lanatus HOM05D000604 ORTHO05D000990 4.3e-19 99.4 313 32.6
Dinv19606 Davidia involucrata HOM05D000604 ORTHO05D000990 4.7e-18 95.9 252 35.3
Potri.005G097400 Populus trichocarpa HOM05D000604 ORTHO05D000990 8.0e-18 95.1 328 31.7
Aqoxy6G01124 Aquilegia oxysepala HOM05D000604 ORTHO05D000990 1.4e-17 94.4 310 35.2
DCAR_027661 Daucus carota HOM05D000604 ORTHO05D000990 3.1e-17 93.2 280 35.0
Eucgr.E01911 Eucalyptus grandis HOM05D000604 ORTHO05D000990 6.8e-17 92.0 315 35.9
Psat7g132800 Pisum sativum HOM05D000604 ORTHO05D000990 8.9e-17 91.7 361 31.9
CSS0024194 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D000990 1.2e-16 91.3 306 34.3
Potri.007G067100 Populus trichocarpa HOM05D000604 ORTHO05D000990 1.2e-16 91.3 334 33.5
PSO017G0977 Papaver somniferum HOM05D000604 ORTHO05D000990 7.5e-16 88.6 301 33.2
PSO478G1429 Papaver somniferum HOM05D000604 ORTHO05D000990 7.5e-16 88.6 298 32.9
Hma1.2p1_0326F.1_g126230 Hydrangea macrophylla HOM05D000604 ORTHO05D000990 9.8e-16 88.2 226 38.1
TPR.G34064 Trifolium pratense HOM05D000604 ORTHO05D000990 2.9e-15 86.7 373 30.6
Nn1g01904 Nelumbo nucifera HOM05D000604 ORTHO05D000990 3.7e-15 86.3 234 35.9
Cfa000744 Carpinus fangiana HOM05D000604 ORTHO05D000990 6.4e-15 85.5 286 33.2
Actinidia37120 Actinidia chinensis HOM05D000604 ORTHO05D000990 8.3e-15 85.1 328 33.2
Sabra05G0079700 Salix brachista HOM05D000604 ORTHO05D000990 1.1e-14 84.7 328 30.2
Rhsim04G0005200 Rhododendron simsii HOM05D000604 ORTHO05D000990 9.2e-14 81.6 292 33.6
CANSAT56G2040 Cannabis sativa HOM05D000604 ORTHO05D000990 1.2e-13 81.3 244 32.8
Lj1C1245G4 Lonicera japonica HOM05D000604 ORTHO05D000990 1.2e-13 81.3 274 33.9
CSS0024617 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D000990 1.6e-13 80.9 330 31.8
Hma1.2p1_0151F.1_g067550 Hydrangea macrophylla HOM05D000604 ORTHO05D000990 3.5e-13 79.7 304 31.6
CARHR177350 Cardamine hirsuta HOM05D000604 ORTHO05D000990 4.6e-13 79.3 293 32.4
Hma1.2p1_0637F.1_g193380 Hydrangea macrophylla HOM05D000604 ORTHO05D000990 4.6e-13 79.3 304 31.6
COL.COLO4_30927 Corchorus olitorius HOM05D000604 ORTHO05D000990 6.0e-13 79.0 316 31.6
vmacro05554 Vaccinium macrocarpon HOM05D000604 ORTHO05D000990 6.0e-13 79.0 302 34.1
Medtr7g094060 Medicago truncatula HOM05D000604 ORTHO05D000990 7.8e-13 78.6 293 32.8
HanXRQChr06g0172701 Helianthus annuus HOM05D000604 ORTHO05D000990 1.0e-12 78.2 258 33.3
Prupe.4G137800 Prunus persica HOM05D000604 ORTHO05D000990 1.0e-12 78.2 310 31.3
MELO3C021786.2 Cucumis melo HOM05D000604 ORTHO05D000990 1.3e-12 77.8 309 31.1
CARHR226390 Cardamine hirsuta HOM05D000604 ORTHO05D000990 1.7e-12 77.4 282 31.9
ECA246G5101 Erigeron canadensis HOM05D000604 ORTHO05D000990 1.7e-12 77.4 282 31.6
Ca_18784_v3 Cicer arietinum L. HOM05D000604 ORTHO05D000990 3.0e-12 76.6 235 33.6
Sp2g10000 Schrenkiella parvula HOM05D000604 ORTHO05D000990 3.0e-12 76.6 293 32.1
AT5G45190 Arabidopsis thaliana HOM05D000604 ORTHO05D000990 3.9e-12 76.3 294 30.6
arahy.Tifrunner.gnm1.ann1.YU2Z9Z Arachis hypogaea HOM05D000604 ORTHO05D000990 5.1e-12 75.9 298 31.2
CsaV3_1G046690 Cucumis sativus L. HOM05D000604 ORTHO05D000990 5.1e-12 75.9 309 31.7
Lalb_Chr09g0328901 Lupinus albus HOM05D000604 ORTHO05D000990 5.1e-12 75.9 324 31.8
arahy.Tifrunner.gnm1.ann1.LZ6UUP Arachis hypogaea HOM05D000604 ORTHO05D000990 8.6e-12 75.1 265 29.4
Manes.14G011800 Manihot esculenta HOM05D000604 ORTHO05D000990 8.6e-12 75.1 317 30.6
Haze_05992 Corylus avellana HOM05D000604 ORTHO05D000990 1.5e-11 74.3 190 36.3
THA.LOC104812898 Tarenaya hassleriana HOM05D000604 ORTHO05D000990 1.9e-11 73.9 309 31.4
arahy.Tifrunner.gnm1.ann1.MF3YPB Arachis hypogaea HOM05D000604 ORTHO05D000990 2.5e-11 73.6 265 29.1
PGR004G1493 Punica granatum HOM05D000604 ORTHO05D000990 2.5e-11 73.6 323 32.8
Lalb_Chr18g0057791 Lupinus albus HOM05D000604 ORTHO05D000990 4.3e-11 72.8 294 31.6
Psat1g013160 Pisum sativum HOM05D000604 ORTHO05D000990 4.3e-11 72.8 319 30.1
MD05G1222500 Malus domestica HOM05D000604 ORTHO05D000990 5.6e-11 72.4 299 30.1
Prupe.4G137700 Prunus persica HOM05D000604 ORTHO05D000990 7.3e-11 72.0 312 30.1
CsaV3_6G013630 Cucumis sativus L. HOM05D000604 ORTHO05D000990 9.5e-11 71.6 249 29.7
Lalb_Chr15g0088661 Lupinus albus HOM05D000604 ORTHO05D000990 9.5e-11 71.6 224 32.1
AL8G14010 Arabidopsis lyrata HOM05D000604 ORTHO05D000990 1.2e-10 71.2 295 30.8
Medtr2g068690 Medicago truncatula HOM05D000604 ORTHO05D000990 2.8e-10 70.1 321 29.3
FvH4_3g15520 Fragaria vesca HOM05D000604 ORTHO05D000990 4.7e-10 69.3 293 27.6
FAN11G0830 Fragaria x ananassa HOM05D000604 ORTHO05D000990 4.7e-10 69.3 293 27.6
HanXRQChr17g0537651 Helianthus annuus HOM05D000604 ORTHO05D000990 6.2e-10 68.9 256 34.4
Oeu037964.1 Olea europaea HOM05D000604 ORTHO05D000990 6.2e-10 68.9 238 34.0
Rhsim06G0240100 Rhododendron simsii HOM05D000604 ORTHO05D000990 6.2e-10 68.9 303 30.4
Ca_03656_v3 Cicer arietinum L. HOM05D000604 ORTHO05D000990 8.1e-10 68.6 317 30.0
MELO3C019652.2 Cucumis melo HOM05D000604 ORTHO05D000990 8.1e-10 68.6 250 29.2
vmacro11718 Vaccinium macrocarpon HOM05D000604 ORTHO05D000990 8.1e-10 68.6 296 32.1
MD10G1204100 Malus domestica HOM05D000604 ORTHO05D000990 1.4e-09 67.8 269 30.9
BraA02t07920Z Brassica rapa HOM05D000604 ORTHO05D000990 1.8e-09 67.4 276 32.2
Nn3g19350 Nelumbo nucifera HOM05D000604 ORTHO05D000990 2.3e-09 67.0 121 42.1
vmacro09776 Vaccinium macrocarpon HOM05D000604 ORTHO05D000990 3.1e-09 66.6 287 32.4
CANSAT78G0138 Cannabis sativa HOM05D000604 ORTHO05D000990 4.0e-09 66.2 265 30.6
Sed0003721 Sechium edule HOM05D000604 ORTHO05D000990 4.0e-09 66.2 241 29.5
DCAR_015197 Daucus carota HOM05D000604 ORTHO05D000990 5.2e-09 65.9 254 29.5
C03p82560 Brassica napus HOM05D000604 ORTHO05D000990 6.8e-09 65.5 273 30.4
BolC2t10651H Brassica oleracea HOM05D000604 ORTHO05D000990 6.8e-09 65.5 290 31.4
GSVIVG01020280001 Vitis vinifera HOM05D000604 ORTHO05D000990 8.9e-09 65.1 257 31.9
BcaC03g16727 Brassica carinata HOM05D000604 ORTHO05D000990 1.5e-08 64.3 290 31.4
Sed0015153 Sechium edule HOM05D000604 ORTHO05D000990 1.5e-08 64.3 323 30.0
ClCG02G018570 Citrullus lanatus HOM05D000604 ORTHO05D000990 2.0e-08 63.9 247 29.6
Thhalv10000834m.g Eutrema salsugineum HOM05D000604 ORTHO05D000990 2.0e-08 63.9 293 30.0
FAN21G3921 Fragaria x ananassa HOM05D000604 ORTHO05D000990 2.6e-08 63.5 295 26.8
AT4G19600 Arabidopsis thaliana HOM05D000604 ORTHO05D000990 4.4e-08 62.8 285 30.5
BolC3t20498H Brassica oleracea HOM05D000604 ORTHO05D000990 4.4e-08 62.8 273 30.0
Carub.0007s2158 Capsella rubella HOM05D000604 ORTHO05D000990 4.4e-08 62.8 278 30.2
Phvul.005G049900 Phaseolus vulgaris HOM05D000604 ORTHO05D000990 4.4e-08 62.8 267 30.3
AUR62012067 Chenopodium quinoa HOM05D000604 ORTHO05D000990 5.8e-08 62.4 321 28.3
Thhalv10024849m.g Eutrema salsugineum HOM05D000604 ORTHO05D000990 5.8e-08 62.4 284 29.2
EL10Ac3g06948 Beta vulgaris HOM05D000604 ORTHO05D000990 7.6e-08 62.0 242 31.0
A06p46720 Brassica napus HOM05D000604 ORTHO05D000990 7.6e-08 62.0 289 32.5
Manes.06G174000 Manihot esculenta HOM05D000604 ORTHO05D000990 7.6e-08 62.0 323 30.3
Nitab4.5_0000123g0280 Nicotiana tabacum HOM05D000604 ORTHO05D000990 7.6e-08 62.0 335 29.3
Ah.04g152290 Amaranthus hybridus HOM05D000604 ORTHO05D000990 9.9e-08 61.6 325 27.4
BcaC01g00623 Brassica carinata HOM05D000604 ORTHO05D000990 1.3e-07 61.2 281 29.5
Oeu007025.1 Olea europaea HOM05D000604 ORTHO05D000990 1.3e-07 61.2 330 30.0
BcaB07g30473 Brassica carinata HOM05D000604 ORTHO05D000990 1.7e-07 60.8 278 31.7
BraA06t27544Z Brassica rapa HOM05D000604 ORTHO05D000990 1.7e-07 60.8 292 32.2
Lsat_1_v5_gn_5_63320 Lactuca sativa HOM05D000604 ORTHO05D000990 1.7e-07 60.8 245 33.5
THA.LOC104811369 Tarenaya hassleriana HOM05D000604 ORTHO05D000990 1.7e-07 60.8 279 30.1
HanXRQChr13g0413231 Helianthus annuus HOM05D000604 ORTHO05D000990 2.2e-07 60.5 250 32.4
Migut.L01415 Erythranthe guttata HOM05D000604 ORTHO05D000990 2.9e-07 60.1 267 30.7
AL7G34460 Arabidopsis lyrata HOM05D000604 ORTHO05D000990 3.7e-07 59.7 280 30.4
BcaC06g34484 Brassica carinata HOM05D000604 ORTHO05D000990 4.9e-07 59.3 286 30.4
BolC7t43329H Brassica oleracea HOM05D000604 ORTHO05D000990 4.9e-07 59.3 286 30.4
Medtr7g094070 Medicago truncatula HOM05D000604 ORTHO05D000990 4.9e-07 59.3 254 29.1
Nitab4.5_0010625g0010 Nicotiana tabacum HOM05D000604 ORTHO05D000990 4.9e-07 59.3 326 29.1
THA.LOC104806208 Tarenaya hassleriana HOM05D000604 ORTHO05D000990 4.9e-07 59.3 292 29.8
Aa31LG9G7950 Aethionema arabicum HOM05D000604 ORTHO05D000990 6.4e-07 58.9 295 30.8
BcaC06g31569 Brassica carinata HOM05D000604 ORTHO05D000990 8.3e-07 58.5 292 30.8
A02p28870 Brassica napus HOM05D000604 ORTHO05D000990 8.3e-07 58.5 280 30.4
Lalb_Chr03g0031731 Lupinus albus HOM05D000604 ORTHO05D000990 8.3e-07 58.5 289 28.7
C02p45910 Brassica napus HOM05D000604 ORTHO05D000990 1.1e-06 58.2 289 31.1
Carub.0008s0299 Capsella rubella HOM05D000604 ORTHO05D000990 1.1e-06 58.2 260 30.0
Lalb_Chr20g0108631 Lupinus albus HOM05D000604 ORTHO05D000990 1.1e-06 58.2 324 29.3
VMungo1080G1692 Vigna mungo HOM05D000604 ORTHO05D000990 1.1e-06 58.2 267 30.0
AUR62024327 Chenopodium quinoa HOM05D000604 ORTHO05D000990 1.4e-06 57.8 319 29.8
Sp7g18170 Schrenkiella parvula HOM05D000604 ORTHO05D000990 1.9e-06 57.4 282 30.1
Aqoxy5G01616_Aqoxy5G01617 Aquilegia oxysepala HOM05D000604 ORTHO05D000990 2.4e-06 57.0 283 28.3
C07p27960 Brassica napus HOM05D000604 ORTHO05D000990 2.4e-06 57.0 286 30.1
BraA08t33434Z Brassica rapa HOM05D000604 ORTHO05D000990 2.4e-06 57.0 259 31.3
Aa31LG6G2170 Aethionema arabicum HOM05D000604 ORTHO05D004856 3.2e-06 56.6 240 31.7
A08p14450 Brassica napus HOM05D000604 ORTHO05D000990 3.2e-06 56.6 278 29.1
PSO541G1300 Papaver somniferum HOM05D000604 ORTHO05D000990 4.1e-06 56.2 315 27.0
Zm00001eb428220 Zea mays HOM05D000604 ORTHO05D000990 4.1e-06 56.2 243 31.3
RcHm_v2.0_Chr5g0026151 Rosa chinensis HOM05D000604 ORTHO05D000990 5.4e-06 55.8 314 28.0
Glyma.15G258300 Glycine max HOM05D000604 ORTHO05D000990 7.1e-06 55.5 323 29.1
RcHm_v2.0_Chr5g0026141 Rosa chinensis HOM05D000604 ORTHO05D000990 7.1e-06 55.5 297 27.9
Solyc10g078180.3 Solanum lycopersicum HOM05D000604 ORTHO05D000990 7.1e-06 55.5 340 26.8
Sopen10g028860 Solanum pennellii HOM05D000604 ORTHO05D000990 7.1e-06 55.5 340 26.8


User provided reference genes

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