Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A878T44 Lonicera japonica HOM05D000399 ORTHO05D000304 1.7e-39 165.6 87 100.0
Dinv40784 Davidia involucrata HOM05D000399 ORTHO05D000304 8.9e-17 90.1 68 64.7
CSS0028681 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 4.4e-16 87.8 63 68.3
CAN.G492.19 Capsicum annuum HOM05D000399 ORTHO05D000304 5.4e-14 80.9 66 57.6
Cc05_g14090 Coffea canephora HOM05D000399 ORTHO05D000304 1.6e-13 79.3 62 64.5
Manes.15G068000 Manihot esculenta HOM05D000399 ORTHO05D000304 1.6e-13 79.3 65 56.9
Ciclev10008694m.g Citrus clementina HOM05D000399 ORTHO05D000304 2.1e-13 79.0 67 53.7
Atru.chr2.3497 Acer truncatum HOM05D000399 ORTHO05D000304 2.7e-13 78.6 68 52.9
EL10Ac4g07760 Beta vulgaris HOM05D000399 ORTHO05D000304 3.5e-13 78.2 68 54.4
Cpa.g.sc12.267 Carica papaya HOM05D000399 ORTHO05D000304 3.5e-13 78.2 66 53.0
AUR62020392 Chenopodium quinoa HOM05D000399 ORTHO05D000304 3.5e-13 78.2 68 57.4
Peaxi162Scf00339g00079 Petunia axillaris HOM05D000399 ORTHO05D000304 6.0e-13 77.4 66 54.5
TAR626G0927 Trochodendron aralioides HOM05D000399 ORTHO05D000304 1.3e-12 76.3 62 56.5
AUR62015826 Chenopodium quinoa HOM05D000399 ORTHO05D000304 3.0e-12 75.1 68 55.9
ClCG10G005250 Citrullus lanatus HOM05D000399 ORTHO05D000304 3.0e-12 75.1 68 48.5
MELO3C014194.2 Cucumis melo HOM05D000399 ORTHO05D000304 3.0e-12 75.1 68 50.0
Sopen12g007270 Solanum pennellii HOM05D000399 ORTHO05D000304 3.0e-12 75.1 62 58.1
TAR624G0323 Trochodendron aralioides HOM05D000399 ORTHO05D000304 3.0e-12 75.1 63 52.4
CsaV3_3G004960 Cucumis sativus L. HOM05D000399 ORTHO05D000304 3.9e-12 74.7 65 50.8
CsaV3_4G013380 Cucumis sativus L. HOM05D000399 ORTHO05D000304 3.9e-12 74.7 65 50.8
Potri.011G086700 Populus trichocarpa HOM05D000399 ORTHO05D000304 3.9e-12 74.7 68 50.0
Duzib213G0551 Durio zibethinus HOM05D000399 ORTHO05D000304 5.1e-12 74.3 68 51.5
Lalb_Chr04g0248271 Lupinus albus HOM05D000399 ORTHO05D000304 5.1e-12 74.3 68 51.5
PSO541G6031 Papaver somniferum HOM05D000399 ORTHO05D000304 5.1e-12 74.3 63 55.6
PSO675G6810 Papaver somniferum HOM05D000399 ORTHO05D000304 5.1e-12 74.3 63 55.6
COL.COLO4_09700 Corchorus olitorius HOM05D001348 ORTHO05D000304 6.6e-12 73.9 68 47.1
MELO3C014193.2 Cucumis melo HOM05D000399 ORTHO05D000304 6.6e-12 73.9 67 50.7
Migut.M01731 Erythranthe guttata HOM05D000399 ORTHO05D000304 6.6e-12 73.9 66 51.5
Solyc12g014410.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 6.6e-12 73.9 62 56.5
Glyma.14G021600 Glycine max HOM05D000399 ORTHO05D000304 1.5e-11 72.8 65 50.8
Nn1g03450 Nelumbo nucifera HOM05D000399 ORTHO05D000304 1.5e-11 72.8 62 56.5
MSTRG.6943 Avicennia marina HOM05D000399 ORTHO05D000304 1.9e-11 72.4 68 51.5
Nitab4.5_0005265g0030 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.9e-11 72.4 64 53.1
RcHm_v2.0_Chr5g0040931 Rosa chinensis HOM05D000399 ORTHO05D000304 1.9e-11 72.4 68 50.0
Prupe.4G219200 Prunus persica HOM05D000399 ORTHO05D000304 2.5e-11 72.0 58 55.2
Gohir.A04G012700 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.3e-11 71.6 69 44.9
Gohir.D05G373200 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.3e-11 71.6 69 44.9
Gorai.009G441900 Gossypium raimondii HOM05D000399 ORTHO05D000304 3.3e-11 71.6 69 44.9
MD03G1196200 Malus domestica HOM05D000399 ORTHO05D000304 3.3e-11 71.6 68 50.0
QL08p006916 Quercus lobata HOM05D000399 ORTHO05D000304 3.3e-11 71.6 67 46.3
QL09p024256 Quercus lobata HOM05D000399 ORTHO05D000304 3.3e-11 71.6 67 46.3
PGSC0003DMG400012864 Solanum tuberosum HOM05D000399 ORTHO05D000304 3.3e-11 71.6 62 54.8
Thecc.07G031500 Theobroma cacao HOM05D000399 ORTHO05D000304 3.3e-11 71.6 68 50.0
Sc07g0002840 Simmondsia chinensis HOM05D000399 ORTHO05D000304 7.3e-11 70.5 68 51.5
CANSAT01G2756 Cannabis sativa HOM05D000399 ORTHO05D000304 9.6e-11 70.1 68 48.5
CiPaw.12G132200 Carya illinoinensis HOM05D000399 ORTHO05D000304 9.6e-11 70.1 65 50.8
Sed0015579 Sechium edule HOM05D000399 ORTHO05D000304 9.6e-11 70.1 68 44.1
TWI39G0857 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 9.6e-11 70.1 67 46.3
MD11G1212500 Malus domestica HOM05D000399 ORTHO05D000304 1.3e-10 69.7 68 48.5
Nitab4.5_0001393g0110 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.1e-10 68.9 65 52.3
Actinidia35365 Actinidia chinensis HOM05D000399 ORTHO05D000304 2.8e-10 68.6 64 51.6
Lsat_1_v5_gn_3_14921 Lactuca sativa HOM05D000399 ORTHO05D000304 2.8e-10 68.6 67 49.3
vmacro09696 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 2.8e-10 68.6 65 50.8
Nitab4.5_0004829g0060 Nicotiana tabacum HOM05D000399 ORTHO05D000304 4.8e-10 67.8 58 55.2
Oeu005523.2 Olea europaea HOM05D000399 ORTHO05D000304 4.8e-10 67.8 68 45.6
SGA_v2.0_scaffold36G14385 Striga asiatica HOM05D000399 ORTHO05D000304 6.2e-10 67.4 68 50.0
GSVIVG01037698001 Vitis vinifera HOM05D000399 ORTHO05D000304 6.2e-10 67.4 66 50.0
Ca_06337_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 8.1e-10 67.0 64 50.0
vmacro17469 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 8.1e-10 67.0 52 61.5
Cfa020304 Carpinus fangiana HOM05D000399 ORTHO05D000304 1.1e-09 66.6 68 47.1
Haze_09717 Corylus avellana HOM05D000399 ORTHO05D000304 1.1e-09 66.6 68 47.1
SalBow8G1530 Salvia bowleyana HOM05D000399 ORTHO05D000304 1.1e-09 66.6 68 44.1
Ah.03g148780 Amaranthus hybridus HOM05D000399 ORTHO05D000304 1.8e-09 65.9 61 49.2
PGR083G1485 Punica granatum HOM05D000399 ORTHO05D000304 1.8e-09 65.9 67 44.8
FAN11G3687 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.4e-09 65.5 60 53.3
CsaV3_3G004950 Cucumis sativus L. HOM05D000399 ORTHO05D000304 3.1e-09 65.1 68 50.0
FAN16G0322 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.1e-09 65.1 63 50.8
Lsat_1_v5_gn_7_114480 Lactuca sativa HOM05D000399 ORTHO05D000304 3.1e-09 65.1 66 47.0
THA.LOC104817859 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 3.1e-09 65.1 65 44.6
CAN.G952.2 Capsicum annuum HOM05D000399 ORTHO05D000304 4.0e-09 64.7 61 50.8
Sed0023956 Sechium edule HOM05D000399 ORTHO05D000304 4.0e-09 64.7 69 43.5
DCAR_016850 Daucus carota HOM05D000399 ORTHO05D000304 5.3e-09 64.3 68 50.0
QL05p059181 Quercus lobata HOM05D000399 ORTHO05D000304 5.3e-09 64.3 67 43.3
arahy.Tifrunner.gnm1.ann1.U657KI Arachis hypogaea HOM05D000399 ORTHO05D000304 6.9e-09 63.9 68 44.1
HanXRQChr17g0546431 Helianthus annuus HOM05D000399 ORTHO05D000304 6.9e-09 63.9 66 45.5
HanXRQChr17g0546441 Helianthus annuus HOM05D000399 ORTHO05D000304 9.0e-09 63.5 66 43.9
Medtr8g058930 Medicago truncatula HOM05D000399 ORTHO05D000304 9.0e-09 63.5 65 43.1
CsaV3_4G013400 Cucumis sativus L. HOM05D000399 ORTHO05D000304 2.6e-08 62.0 68 48.5
FAN25G1948 Fragaria x ananassa HOM05D000399 ORTHO05D000304 4.4e-08 61.2 47 59.6
QL08p008192 Quercus lobata HOM05D000399 ORTHO05D000304 4.4e-08 61.2 64 45.3
TPR.G10756 Trifolium pratense HOM05D000399 ORTHO05D000304 4.4e-08 61.2 65 43.1
Psat2g012440 Pisum sativum HOM05D000399 ORTHO05D000304 5.8e-08 60.8 65 44.6
ECA248G1950 Erigeron canadensis HOM05D000399 ORTHO05D000304 7.6e-08 60.5 63 49.2
QL08p006924 Quercus lobata HOM05D000399 ORTHO05D000304 9.9e-08 60.1 58 43.1
QL09p024268 Quercus lobata HOM05D000399 ORTHO05D000304 9.9e-08 60.1 58 43.1
Hund23862 Selenicereus undatus HOM05D000399 ORTHO05D000304 9.9e-08 60.1 69 50.7
arahy.Tifrunner.gnm1.ann1.7RWM6D Arachis hypogaea HOM05D000399 ORTHO05D000304 1.3e-07 59.7 68 41.2
AUR62015825 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.7e-07 59.3 69 46.4
TPR.G1198 Trifolium pratense HOM05D000399 ORTHO05D000304 1.7e-07 59.3 65 43.1
EL10Ac4g07761 Beta vulgaris HOM05D000399 ORTHO05D000304 2.9e-07 58.5 69 42.0
Hund23225 Selenicereus undatus HOM05D000399 ORTHO05D000304 2.9e-07 58.5 64 45.3
AUR62020393 Chenopodium quinoa HOM05D000399 ORTHO05D000304 3.8e-07 58.2 69 46.4
ECA236G2771 Erigeron canadensis HOM05D000399 ORTHO05D000304 3.8e-07 58.2 65 49.2
CDE11G1088 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 4.9e-07 57.8 64 39.1
MD03G1196100 Malus domestica HOM05D000399 ORTHO05D000304 4.9e-07 57.8 46 56.5
Eucgr.F00717 Eucalyptus grandis HOM05D000399 ORTHO05D000304 1.1e-06 56.6 55 49.1
Zm00001eb346320 Zea mays HOM05D000399 ORTHO05D000304 1.1e-06 56.6 59 45.8
MBI10_g29392_MAGBIO Magnolia biondii HOM05D000399 ORTHO05D000304 1.4e-06 56.2 63 44.4
RhsimUnG0248400 Rhododendron simsii HOM05D000399 ORTHO05D000304 1.4e-06 56.2 59 50.8
Medtr3g096700 Medicago truncatula HOM05D000399 ORTHO05D000304 1.9e-06 55.8 68 36.8
MD11G1212400 Malus domestica HOM05D000399 ORTHO05D000304 2.4e-06 55.5 54 51.9
RcHm_v2.0_Chr5g0040941 Rosa chinensis HOM05D000399 ORTHO05D000304 3.2e-06 55.1 63 46.0
LjContig00272g0000787 Lotus japonicus HOM05D000399 ORTHO05D000304 5.4e-06 54.3 66 43.9
Rhsim13G0151000 Rhododendron simsii HOM05D000399 ORTHO05D000304 5.4e-06 54.3 51 52.9
TPR.G17891 Trifolium pratense HOM05D001608 ORTHO05D002070 9.3e-06 53.5 62 40.3


User provided reference genes

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