Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A837G48 Lonicera japonica HOM05D000070 ORTHO05D006683 0.0e+00 1805.8 884 100.0
Actinidia35238 Actinidia chinensis HOM05D000070 ORTHO05D006683 1.1e-234 817.4 980 47.9
Dinv20211 Davidia involucrata HOM05D000070 ORTHO05D006683 1.6e-230 803.5 846 53.3
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 5.4e-226 788.5 998 46.3
Atru.chr2.2387 Acer truncatum HOM05D000070 ORTHO05D006683 2.0e-217 760.0 1017 44.2
CiPaw.11G166700 Carya illinoinensis HOM05D000070 ORTHO05D006683 2.9e-216 756.1 998 44.8
QL08p023642 Quercus lobata HOM05D000070 ORTHO05D006683 1.1e-215 754.2 991 45.2
MD11G1256000 Malus domestica HOM05D000070 ORTHO05D006683 2.5e-215 753.1 978 44.7
Cfa020618 Carpinus fangiana HOM05D000070 ORTHO05D006683 9.5e-215 751.1 988 44.8
Ciclev10007229m.g Citrus clementina HOM05D000070 ORTHO05D006683 3.9e-208 729.2 988 44.0
Haze_09387 Corylus avellana HOM05D000070 ORTHO05D006683 1.6e-206 723.8 1020 43.0
TAR624G0583 Trochodendron aralioides HOM05D000070 ORTHO05D006683 3.1e-205 719.5 1035 42.6
RcHm_v2.0_Chr5g0032311 Rosa chinensis HOM05D000070 ORTHO05D006683 6.6e-200 701.8 1013 42.7
CSS0012964 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D006683 6.2e-198 695.3 866 47.6
PGSC0003DMG400012401 Solanum tuberosum HOM05D000070 ORTHO05D006683 1.7e-195 687.2 959 43.9
Thecc.07G098900 Theobroma cacao HOM05D000070 ORTHO05D006683 4.1e-194 682.6 1066 41.2
ECA240G2408 Erigeron canadensis HOM05D000070 ORTHO05D006683 4.6e-193 679.1 923 44.2
Nitab4.5_0002019g0010 Nicotiana tabacum HOM05D000070 ORTHO05D006683 3.0e-192 676.4 950 43.6
Manes.15G090100 Manihot esculenta HOM05D000070 ORTHO05D006683 8.6e-192 674.9 989 42.1
Sopen07g030990 Solanum pennellii HOM05D000070 ORTHO05D006683 3.6e-190 669.5 957 42.9
FAN11G2237 Fragaria x ananassa HOM05D000070 ORTHO05D006683 6.2e-190 668.7 1060 39.9
FAN21G0502 Fragaria x ananassa HOM05D000070 ORTHO05D006683 6.2e-190 668.7 1062 40.1
Nitab4.5_0000246g0030 Nicotiana tabacum HOM05D000070 ORTHO05D006683 8.9e-189 664.8 942 43.1
Solyc07g062770.2 Solanum lycopersicum HOM05D000070 ORTHO05D006683 1.5e-188 664.1 959 43.0
FvH4_3g19240 Fragaria vesca HOM05D000070 ORTHO05D006683 3.4e-188 662.9 1063 39.9
FAN16G3451 Fragaria x ananassa HOM05D000070 ORTHO05D006683 9.9e-188 661.4 1058 39.9
Cc05_g11650 Coffea canephora HOM05D000070 ORTHO05D006683 1.3e-187 661.0 957 42.7
Sabra11G0127000 Salix brachista HOM05D000070 ORTHO05D006683 4.9e-187 659.1 984 40.4
FAN25G1528 Fragaria x ananassa HOM05D000070 ORTHO05D006683 6.4e-187 658.7 1057 40.0
CAN.G162.29 Capsicum annuum HOM05D000070 ORTHO05D006683 3.2e-186 656.4 963 42.4
TWI38G2035 Tripterygium wilfordii HOM05D000070 ORTHO05D006683 2.1e-185 653.7 991 40.9
Potri.011G141400 Populus trichocarpa HOM05D000070 ORTHO05D006683 2.7e-185 653.3 986 41.0
Duzib213G1081 Durio zibethinus HOM05D000070 ORTHO05D006683 1.7e-184 650.6 1051 39.8
Gohir.D01G047300 Gossypium hirsutum HOM05D000070 ORTHO05D006683 3.0e-184 649.8 1050 39.5
Gorai.004G029700 Gossypium raimondii HOM05D000070 ORTHO05D006683 3.0e-184 649.8 1038 41.0
Gohir.A01G060800 Gossypium hirsutum HOM05D000070 ORTHO05D006683 6.6e-184 648.7 1050 39.7
Gorai.002G066800 Gossypium raimondii HOM05D000070 ORTHO05D006683 6.6e-184 648.7 1050 39.5
Glyma.12G227000 Glycine max HOM05D000070 ORTHO05D006683 1.5e-183 647.5 979 41.7
Gohir.D08G032300 Gossypium hirsutum HOM05D000070 ORTHO05D006683 5.6e-183 645.6 1038 40.6
Duzib170G1082 Durio zibethinus HOM05D000070 ORTHO05D006683 6.2e-182 642.1 1059 39.4
Glyma.13G273300 Glycine max HOM05D000070 ORTHO05D006683 8.1e-182 641.7 988 40.6
GSVIVG01014274001 Vitis vinifera HOM05D000070 ORTHO05D006683 5.2e-181 639.0 971 42.0
Lalb_Chr25g0286211 Lupinus albus HOM05D000070 ORTHO05D006683 9.0e-181 638.3 940 42.8
CANSAT35G1857 Cannabis sativa HOM05D000070 ORTHO05D006683 1.2e-180 637.9 952 42.5
Phvul.005G069600 Phaseolus vulgaris HOM05D000070 ORTHO05D006683 2.9e-179 633.3 987 39.7
TPR.G7945 Trifolium pratense HOM05D000070 ORTHO05D006683 3.0e-176 623.2 956 41.3
Lalb_Chr20g0109491 Lupinus albus HOM05D000070 ORTHO05D006683 1.1e-175 621.3 948 40.3
MSTRG.14209 Avicennia marina HOM05D000070 ORTHO05D006683 5.6e-175 619.0 961 40.2
Lj3g0013945 Lotus japonicus HOM05D000070 ORTHO05D006683 1.8e-173 614.0 1008 39.7
HanXRQChr13g0391161 Helianthus annuus HOM05D000070 ORTHO05D006683 2.4e-173 613.6 908 42.7
Nn1g06393 Nelumbo nucifera HOM05D000070 ORTHO05D006683 6.9e-173 612.1 1013 39.5
Psat5g241520 Pisum sativum HOM05D000070 ORTHO05D006683 1.7e-171 607.4 948 40.6
Medtr2g078630 Medicago truncatula HOM05D000070 ORTHO05D006683 2.9e-171 606.7 971 40.0
Ca_03533_v3 Cicer arietinum L. HOM05D000070 ORTHO05D006683 9.3e-170 601.7 951 40.5
Migut.H01962 Erythranthe guttata HOM05D000070 ORTHO05D006683 1.2e-169 601.3 928 40.9
SGA_v2.0_scaffold70G23693 Striga asiatica HOM05D000070 ORTHO05D006683 2.1e-169 600.5 955 40.4
Sed0024008 Sechium edule HOM05D000070 ORTHO05D006683 2.7e-169 600.1 972 39.2
VMungo1080G0328 Vigna mungo HOM05D000070 ORTHO05D006683 3.5e-169 599.7 984 38.7
Eucgr.F01177 Eucalyptus grandis HOM05D000070 ORTHO05D006683 3.9e-168 596.3 986 39.0
CsaV3_3G019540 Cucumis sativus L. HOM05D000070 ORTHO05D006683 8.7e-168 595.1 980 39.2
MELO3C019399.2 Cucumis melo HOM05D000070 ORTHO05D006683 1.9e-167 594.0 980 38.9
PGR083G0044 Punica granatum HOM05D000070 ORTHO05D006683 1.1e-165 588.2 953 38.8
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 2.2e-163 580.5 946 40.5
arahy.Tifrunner.gnm1.ann1.48N9B9 Arachis hypogaea HOM05D000070 ORTHO05D006683 9.3e-162 575.1 964 39.6
ClCG05G009240 Citrullus lanatus HOM05D000070 ORTHO05D006683 1.5e-159 567.8 1009 37.7
PSO541G4369 Papaver somniferum HOM05D000070 ORTHO05D006683 2.5e-159 567.0 1038 37.5
Aqoxy1G02305 Aquilegia oxysepala HOM05D000070 ORTHO05D006683 7.4e-159 565.5 1027 37.5
SalBow7G0119 Salvia bowleyana HOM05D000070 ORTHO05D006683 3.7e-158 563.1 953 38.9
DCAR_013128 Daucus carota HOM05D000070 ORTHO05D006683 6.2e-158 562.4 983 39.3
AUR62019488 Chenopodium quinoa HOM05D000070 ORTHO05D006683 3.0e-152 543.5 1051 36.2
Hma1.2p1_0416F.1_g148460 Hydrangea macrophylla HOM05D000070 ORTHO05D006683 1.5e-148 531.2 554 54.5
Aa31LG8G2340 Aethionema arabicum HOM05D000070 ORTHO05D006683 2.6e-148 530.4 934 37.0
Lsat_1_v5_gn_9_98220 Lactuca sativa HOM05D000070 ORTHO05D006683 1.7e-147 527.7 894 38.4
Thhalv10019880m.g Eutrema salsugineum HOM05D000070 ORTHO05D006683 6.5e-147 525.8 988 35.2
Dinv14946 Davidia involucrata HOM05D000070 ORTHO05D006683 7.9e-145 518.8 488 57.4
CARHR090100 Cardamine hirsuta HOM05D000070 ORTHO05D006683 1.8e-144 517.7 989 35.2
THA.LOC104810458 Tarenaya hassleriana HOM05D000070 ORTHO05D006683 3.0e-144 516.9 1023 36.0
Carub.0003s1477 Capsella rubella HOM05D000070 ORTHO05D006683 8.2e-142 508.8 977 35.3
EL10Ac4g08256 Beta vulgaris HOM05D000070 ORTHO05D006683 1.1e-141 508.4 997 34.2
AUR62036148 Chenopodium quinoa HOM05D000070 ORTHO05D006683 3.1e-141 506.9 1048 34.6
C03p47510 Brassica napus HOM05D000070 ORTHO05D006683 6.5e-139 499.2 974 35.5
BolC3t17015H Brassica oleracea HOM05D000070 ORTHO05D006683 6.5e-139 499.2 974 35.5
AT3G15120 Arabidopsis thaliana HOM05D000070 ORTHO05D006683 1.4e-138 498.0 1001 34.4
AL3G27480 Arabidopsis lyrata HOM05D000070 ORTHO05D006683 4.2e-138 496.5 993 35.1
A03p39160 Brassica napus HOM05D000070 ORTHO05D006683 7.9e-137 492.3 964 35.7
BraA03t13065Z Brassica rapa HOM05D000070 ORTHO05D006683 3.0e-136 490.3 977 35.4
Sc07g0002540 Simmondsia chinensis HOM05D000070 ORTHO05D006683 4.4e-135 486.5 574 47.6
Peaxi162Scf00069g01833 Petunia axillaris HOM05D000070 ORTHO05D006683 1.7e-134 484.6 751 41.4
BcaC01g03897 Brassica carinata HOM05D000070 ORTHO05D006683 1.4e-133 481.5 942 34.8
Sp3g13330 Schrenkiella parvula HOM05D000070 ORTHO05D006683 3.4e-132 476.9 982 33.7
unitig_899.g15571 Utricularia gibba HOM05D000070 ORTHO05D006683 1.4e-130 471.5 933 34.0
CDE10G0809 Ceratophyllum demersum HOM05D000070 ORTHO05D006683 2.0e-127 461.1 973 33.8
ATR0602G265 Amborella trichopoda HOM05D000070 ORTHO05D006683 7.0e-125 452.6 980 32.9
Prupe.4G173800 Prunus persica HOM05D000070 ORTHO05D006683 5.9e-124 449.5 500 49.4
Ah.06g184760 Amaranthus hybridus HOM05D000070 ORTHO05D006683 1.8e-120 438.0 602 41.7
HPP92_024566 Vanilla planifolia HOM05D000070 ORTHO05D006683 1.8e-117 427.9 946 31.6
ClCG04G000030 Citrullus lanatus HOM05D000070 ORTHO05D006683 1.2e-113 415.2 909 31.6
Zm00001eb157300 Zea mays HOM05D000070 ORTHO05D006683 9.8e-103 379.0 991 29.7
Hma1.2p1_0416F.1_g148470 Hydrangea macrophylla HOM05D000070 ORTHO05D006683 3.7e-102 377.1 379 54.9
Os01g0668300 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D006683 2.4e-93 347.8 975 27.7
Sed0002493 Sechium edule HOM05D000070 ORTHO05D006683 6.6e-83 313.2 552 36.4
SEGI_00098 Sequoiadendron giganteum HOM05D000070 ORTHO05D006683 6.2e-81 306.6 1031 27.0
Dinv14947 Davidia involucrata HOM05D000070 ORTHO05D006683 1.8e-80 305.1 446 41.7
SHI21482 Sapria himalayana HOM05D000070 ORTHO05D006683 1.5e-58 232.3 270 46.3
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 3.4e-55 221.1 296 43.9
arahy.Tifrunner.gnm1.ann1.T5288F Arachis hypogaea HOM05D000070 ORTHO05D006683 1.9e-53 215.3 476 34.2
CSS0003545 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D006683 5.4e-53 213.8 180 60.6
CDE10G0445 Ceratophyllum demersum HOM05D000070 ORTHO05D006683 1.2e-52 212.6 377 36.1
Gohir.A08G021416 Gossypium hirsutum HOM05D000070 ORTHO05D006683 4.6e-52 210.7 243 49.0
CDE10G0784 Ceratophyllum demersum HOM05D000070 ORTHO05D006683 1.6e-49 202.2 169 58.0
Peaxi162Scf00069g01842 Petunia axillaris HOM05D000070 ORTHO05D006683 7.6e-47 193.4 191 54.5
TAR626G0798 Trochodendron aralioides HOM05D000070 ORTHO05D006683 5.1e-43 180.6 188 51.6
TAR626G0446 Trochodendron aralioides HOM05D000070 ORTHO05D006683 9.6e-42 176.4 398 34.2
Psat0s3269g0080 Pisum sativum HOM05D000070 ORTHO05D006683 4.8e-41 174.1 295 38.3
Gohir.A08G021424 Gossypium hirsutum HOM05D000070 ORTHO05D006683 5.1e-35 154.1 167 44.3
SHI21480 Sapria himalayana HOM05D000070 ORTHO05D006683 2.2e-33 148.7 169 45.6
CsaV3_4G021830 Cucumis sativus L. HOM05D000070 ORTHO05D045030 2.4e-32 145.2 230 37.4
Mapoly0043s0039 Marchantia polymorpha HOM05D036583 ORTHO05D006683 2.2e-30 138.7 635 23.3
AagrBONN_evm.TU.Sc2ySwM_368.1632 Anthoceros agrestis HOM05D000070 ORTHO05D006683 5.0e-30 137.5 761 22.5
CSS0021902 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D006683 1.8e-27 129.0 105 60.0
SHI21484 Sapria himalayana HOM05D000070 ORTHO05D006683 2.6e-18 98.6 168 35.1
Sed0011266 Sechium edule HOM05D000070 ORTHO05D045030 1.1e-16 93.2 202 32.2
Pp3c8_5410 Physcomitrium patens HOM05D000070 ORTHO05D006683 2.0e-15 89.0 146 37.7
CsaV3_4G021820 Cucumis sativus L. HOM05D000070 ORTHO05D000722 3.8e-14 84.7 76 46.1
Thecc.10G085500 Theobroma cacao HOM05D000651 ORTHO05D001126 2.2e-09 68.9 73 43.8
CSS0037272 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D006683 2.6e-07 62.0 53 62.3
CSS0002624 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D109156 7.7e-07 60.5 86 38.4
SHI21481 Sapria himalayana HOM05D000070 ORTHO05D365720 3.8e-06 58.2 101 38.6


User provided reference genes

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