Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A789T53 Lonicera japonica HOM05D002238 ORTHO05D001984 1.1e-23 112.5 56 100.0
Lj1A794T53 Lonicera japonica HOM05D002238 ORTHO05D001984 1.4e-15 85.5 53 81.1
Gohir.D04G004500 Gossypium hirsutum HOM05D002238 ORTHO05D001984 5.4e-15 83.6 53 77.4
TAR629G0143 Trochodendron aralioides HOM05D002238 ORTHO05D001984 9.2e-15 82.8 53 73.6
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 2.0e-14 81.6 53 75.5
Gorai.012G005700 Gossypium raimondii HOM05D002238 ORTHO05D001984 2.0e-14 81.6 53 75.5
Prupe.3G198900 Prunus persica HOM05D002238 ORTHO05D001984 1.3e-13 79.0 53 71.7
Prupe.6G340200 Prunus persica HOM05D002238 ORTHO05D001984 1.3e-13 79.0 53 71.7
COL.COLO4_17143 Corchorus olitorius HOM05D002238 ORTHO05D001984 2.3e-13 78.2 53 71.7
ECA238G4099 Erigeron canadensis HOM05D002238 ORTHO05D001984 2.3e-13 78.2 53 69.8
TPR.G24144 Trifolium pratense HOM05D002238 ORTHO05D001984 2.3e-13 78.2 53 71.7
MD17G1115700 Malus domestica HOM05D002238 ORTHO05D001984 3.0e-13 77.8 53 69.8
Gohir.A05G411500 Gossypium hirsutum HOM05D002238 ORTHO05D001984 3.9e-13 77.4 53 71.7
HanXRQChr04g0126541 Helianthus annuus HOM05D002238 ORTHO05D001984 3.9e-13 77.4 53 66.0
Hma1.2p1_0017F.1_g011480 Hydrangea macrophylla HOM05D002238 ORTHO05D001984 3.9e-13 77.4 53 67.9
RcHm_v2.0_Chr2g0156191 Rosa chinensis HOM05D002238 ORTHO05D001984 3.9e-13 77.4 53 69.8
RcHm_v2.0_Chr4g0385201 Rosa chinensis HOM05D002238 ORTHO05D001984 3.9e-13 77.4 53 69.8
Duzib114G0194 Durio zibethinus HOM05D002238 ORTHO05D001984 5.0e-13 77.0 53 69.8
Sed0014080 Sechium edule HOM05D002238 ORTHO05D001984 5.0e-13 77.0 53 69.8
Lsat_1_v5_gn_7_95300 Lactuca sativa HOM05D002238 ORTHO05D001984 6.6e-13 76.6 53 67.9
Ca_22317_v3 Cicer arietinum L. HOM05D002238 ORTHO05D001984 8.6e-13 76.3 53 67.9
Dinv21284 Davidia involucrata HOM05D002238 ORTHO05D001984 8.6e-13 76.3 53 69.8
Medtr8g077430 Medicago truncatula HOM05D002238 ORTHO05D001984 8.6e-13 76.3 53 67.9
Rhsim01G0200000 Rhododendron simsii HOM05D002238 ORTHO05D001984 8.6e-13 76.3 53 67.9
Rhsim01G0212800 Rhododendron simsii HOM05D002238 ORTHO05D001984 8.6e-13 76.3 53 67.9
Sed0013246 Sechium edule HOM05D002238 ORTHO05D001984 8.6e-13 76.3 53 67.9
Zm00001eb228810 Zea mays HOM05D002238 ORTHO05D001984 8.6e-13 76.3 53 66.0
Zm00001eb228830 Zea mays HOM05D002238 ORTHO05D001984 8.6e-13 76.3 53 66.0
Ciclev10016158m.g Citrus clementina HOM05D002238 ORTHO05D001984 1.1e-12 75.9 53 69.8
Potri.014G166200 Populus trichocarpa HOM05D002238 ORTHO05D001984 1.1e-12 75.9 53 69.8
Sabra14G0126500 Salix brachista HOM05D002238 ORTHO05D001984 1.1e-12 75.9 53 69.8
Thecc.10G082400 Theobroma cacao HOM05D002238 ORTHO05D001984 1.1e-12 75.9 53 67.9
vmacro12095 Vaccinium macrocarpon HOM05D002238 ORTHO05D001984 1.1e-12 75.9 53 69.8
Atru.chr6.3380 Acer truncatum HOM05D002238 ORTHO05D001984 1.5e-12 75.5 53 66.0
Aqoxy2G01045 Aquilegia oxysepala HOM05D002238 ORTHO05D001984 1.5e-12 75.5 53 66.0
Aqoxy4G02593 Aquilegia oxysepala HOM05D002238 ORTHO05D001984 1.5e-12 75.5 53 66.0
CSS0015125 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D001984 1.5e-12 75.5 53 69.8
CSS0035678 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D001984 1.5e-12 75.5 53 69.8
HanXRQChr17g0537591 Helianthus annuus HOM05D002238 ORTHO05D001984 1.5e-12 75.5 53 64.2
Oeu009627.1 Olea europaea HOM05D002238 ORTHO05D001984 1.5e-12 75.5 53 67.9
Phvul.008G288600 Phaseolus vulgaris HOM05D002238 ORTHO05D001984 1.5e-12 75.5 53 67.9
Ca_12576_v3 Cicer arietinum L. HOM05D002238 ORTHO05D001984 1.9e-12 75.1 53 67.9
Os12g0403800 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D001984 1.9e-12 75.1 53 64.2
Hma1.2p1_0108F.1_g051790 Hydrangea macrophylla HOM05D002238 ORTHO05D001984 2.5e-12 74.7 53 67.9
Manes.03G101000 Manihot esculenta HOM05D002238 ORTHO05D001984 2.5e-12 74.7 53 62.3
Oeu027351.4 Olea europaea HOM05D002238 ORTHO05D001984 2.5e-12 74.7 53 67.9
PGR044G1809 Punica granatum HOM05D002238 ORTHO05D001984 2.5e-12 74.7 53 66.0
Eucgr.G02573 Eucalyptus grandis HOM05D002238 ORTHO05D001984 3.3e-12 74.3 53 64.2
FAN05G0939 Fragaria x ananassa HOM05D002238 ORTHO05D001984 3.3e-12 74.3 53 67.9
Phvul.004G077200 Phaseolus vulgaris HOM05D002238 ORTHO05D001984 3.3e-12 74.3 53 66.0
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 3.3e-12 74.3 53 67.9
SGA_v2.0_scaffold347G49567 Striga asiatica HOM05D002238 ORTHO05D001984 3.3e-12 74.3 53 67.9
SGA_v2.0_scaffold63G21756 Striga asiatica HOM05D002238 ORTHO05D001984 3.3e-12 74.3 53 67.9
SGA_v2.0_scaffold63G21761 Striga asiatica HOM05D002238 ORTHO05D001984 3.3e-12 74.3 53 67.9
SGA_v2.0_scaffold96G29097 Striga asiatica HOM05D002238 ORTHO05D001984 3.3e-12 74.3 53 67.9
arahy.Tifrunner.gnm1.ann1.DIZ14G Arachis hypogaea HOM05D002238 ORTHO05D001984 4.3e-12 73.9 53 66.0
arahy.Tifrunner.gnm1.ann1.VW2QG0 Arachis hypogaea HOM05D002238 ORTHO05D001984 4.3e-12 73.9 53 66.0
CARHR082460 Cardamine hirsuta HOM05D002238 ORTHO05D001984 4.3e-12 73.9 53 66.0
FvH4_6g40740 Fragaria vesca HOM05D002238 ORTHO05D001984 4.3e-12 73.9 53 66.0
FAN02G1526 Fragaria x ananassa HOM05D002238 ORTHO05D001984 4.3e-12 73.9 53 66.0
FAN09G1531 Fragaria x ananassa HOM05D002238 ORTHO05D001984 4.3e-12 73.9 53 66.0
FAN14G0117 Fragaria x ananassa HOM05D002238 ORTHO05D001984 4.3e-12 73.9 53 66.0
Lj2g0027163 Lotus japonicus HOM05D002238 ORTHO05D001984 4.3e-12 73.9 53 66.0
Lj5g0021748 Lotus japonicus HOM05D002238 ORTHO05D001984 4.3e-12 73.9 53 66.0
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 4.3e-12 73.9 53 67.9
VMungo0647G0871 Vigna mungo HOM05D000829 ORTHO05D001984 4.3e-12 73.9 53 66.0
Lalb_Chr10g0095971 Lupinus albus HOM05D002238 ORTHO05D001984 5.6e-12 73.6 53 66.0
unitig_52.g17116 Utricularia gibba HOM05D002238 ORTHO05D001984 5.6e-12 73.6 53 66.0
MSTRG.27160 Avicennia marina HOM05D002238 ORTHO05D001984 7.3e-12 73.2 53 64.2
MELO3C008154.2 Cucumis melo HOM05D002238 ORTHO05D001984 7.3e-12 73.2 53 64.2
CsaV3_1G001380 Cucumis sativus L. HOM05D002238 ORTHO05D001984 7.3e-12 73.2 53 66.0
Migut.N01823 Erythranthe guttata HOM05D002238 ORTHO05D001984 7.3e-12 73.2 53 64.2
SHI10149 Sapria himalayana HOM05D002238 ORTHO05D001984 7.3e-12 73.2 53 64.2
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 7.3e-12 73.2 53 67.9
QL02p019830 Quercus lobata HOM05D002238 ORTHO05D001984 9.5e-12 72.8 53 66.0
Glyma.02G070100 Glycine max HOM05D002238 ORTHO05D001984 1.2e-11 72.4 53 64.2
Glyma.16G151700 Glycine max HOM05D002238 ORTHO05D001984 1.2e-11 72.4 53 64.2
Nn3g19738 Nelumbo nucifera HOM05D002238 ORTHO05D001984 1.2e-11 72.4 53 66.0
Hund01750 Selenicereus undatus HOM05D002238 ORTHO05D001984 1.2e-11 72.4 55 69.1
Ah.08g209290 Amaranthus hybridus HOM05D002238 ORTHO05D001984 1.6e-11 72.0 55 72.7
AL3G19110 Arabidopsis lyrata HOM05D002238 ORTHO05D001984 1.6e-11 72.0 53 64.2
AT3G07750 Arabidopsis thaliana HOM05D002238 ORTHO05D001984 1.6e-11 72.0 53 64.2
Carub.0003s0733 Capsella rubella HOM05D002238 ORTHO05D001984 1.6e-11 72.0 53 64.2
MBI16_g14386_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D001984 1.6e-11 72.0 54 64.8
MBI16_g20582_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D001984 1.6e-11 72.0 54 64.8
MD09G1125700 Malus domestica HOM05D002238 ORTHO05D001984 1.6e-11 72.0 53 66.0
Rhsim06G0175300 Rhododendron simsii HOM05D002238 ORTHO05D001984 1.6e-11 72.0 53 64.2
EL10Ac1g00031 Beta vulgaris HOM05D002238 ORTHO05D001984 2.1e-11 71.6 55 69.1
MBI07_g04746_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D001984 3.6e-11 70.9 54 66.7
PSO541G0351 Papaver somniferum HOM05D002238 ORTHO05D001984 3.6e-11 70.9 52 69.2
PSO675G0487 Papaver somniferum HOM05D002238 ORTHO05D001984 3.6e-11 70.9 52 69.2
TWI36G1349 Tripterygium wilfordii HOM05D002238 ORTHO05D001984 3.6e-11 70.9 53 62.3
vmacro03834 Vaccinium macrocarpon HOM05D002238 ORTHO05D001984 3.6e-11 70.9 53 66.0
SalBow4G2450 Salvia bowleyana HOM05D002238 ORTHO05D001984 4.7e-11 70.5 53 62.3
BcaC05g29568 Brassica carinata HOM05D002238 ORTHO05D001984 6.2e-11 70.1 53 62.3
CiPaw.01G209500 Carya illinoinensis HOM05D002238 ORTHO05D001984 6.2e-11 70.1 53 66.0
Cc02_g30130 Coffea canephora HOM05D002238 ORTHO05D001984 6.2e-11 70.1 53 67.9
Sp3g06680 Schrenkiella parvula HOM05D002238 ORTHO05D001984 6.2e-11 70.1 53 64.2
ATR0624G131 Amborella trichopoda HOM05D002238 ORTHO05D001984 8.0e-11 69.7 53 60.4
CANSAT21G0573 Cannabis sativa HOM05D002238 ORTHO05D001984 8.0e-11 69.7 54 63.0
CANSAT21G2220 Cannabis sativa HOM05D002238 ORTHO05D001984 8.0e-11 69.7 54 63.0
Thhalv10021262m.g Eutrema salsugineum HOM05D002238 ORTHO05D001984 8.0e-11 69.7 53 62.3
Cpa.g.sc211.23 Carica papaya HOM05D002238 ORTHO05D001984 1.1e-10 69.3 53 62.3
CAN.G1394.37 Capsicum annuum HOM05D002238 ORTHO05D001984 1.4e-10 68.9 53 60.4
CDE05G0385 Ceratophyllum demersum HOM05D002238 ORTHO05D001984 1.4e-10 68.9 53 64.2
Aa31LG5G18320 Aethionema arabicum HOM05D002238 ORTHO05D001984 1.8e-10 68.6 53 60.4
BcaB04g21272 Brassica carinata HOM05D002238 ORTHO05D001984 1.8e-10 68.6 53 60.4
BolC1t05536H Brassica oleracea HOM05D002238 ORTHO05D001984 1.8e-10 68.6 53 60.4
BraA01t04366Z Brassica rapa HOM05D002238 ORTHO05D001984 1.8e-10 68.6 53 60.4
AUR62004701 Chenopodium quinoa HOM05D002238 ORTHO05D001984 1.8e-10 68.6 55 63.6
AUR62023617 Chenopodium quinoa HOM05D002238 ORTHO05D001984 1.8e-10 68.6 55 63.6
A05p40470 Brassica napus HOM05D002238 ORTHO05D001984 2.3e-10 68.2 53 58.5
C05p59570 Brassica napus HOM05D002238 ORTHO05D001984 2.3e-10 68.2 53 58.5
BraA05t22780Z Brassica rapa HOM05D002238 ORTHO05D001984 2.3e-10 68.2 53 58.5
SalBow1G1877 Salvia bowleyana HOM05D002238 ORTHO05D001984 2.3e-10 68.2 53 60.4
Sc04g0009070 Simmondsia chinensis HOM05D002238 ORTHO05D001984 2.3e-10 68.2 54 61.1
SGA_v2.0_scaffold7G04028 Striga asiatica HOM05D002238 ORTHO05D001984 2.3e-10 68.2 53 64.2
GSVIVG01035933001 Vitis vinifera HOM05D002238 ORTHO05D001984 2.3e-10 68.2 53 60.4
AUR62029701 Chenopodium quinoa HOM05D002238 ORTHO05D001984 5.2e-10 67.0 55 61.8
THA.LOC104819037 Tarenaya hassleriana HOM05D002238 ORTHO05D001984 5.2e-10 67.0 53 56.6
Nitab4.5_0001265g0080 Nicotiana tabacum HOM05D002238 ORTHO05D001984 6.8e-10 66.6 53 60.4
Nitab4.5_0001816g0140 Nicotiana tabacum HOM05D002238 ORTHO05D001984 6.8e-10 66.6 53 60.4
QL02p101482 Quercus lobata HOM05D002238 ORTHO05D001984 8.9e-10 66.2 54 63.0
PGSC0003DMG400012510 Solanum tuberosum HOM05D002238 ORTHO05D001984 2.0e-09 65.1 53 56.6
ECA236G2666 Erigeron canadensis HOM05D002238 ORTHO05D001984 2.6e-09 64.7 51 58.8
SEGI_02051 Sequoiadendron giganteum HOM05D002238 ORTHO05D001984 3.4e-09 64.3 51 60.8
Peaxi162Scf00065g01518 Petunia axillaris HOM05D002238 ORTHO05D001984 4.4e-09 63.9 51 56.9
Solyc08g007520.4 Solanum lycopersicum HOM05D002238 ORTHO05D001984 4.4e-09 63.9 53 54.7
Sopen08g003480 Solanum pennellii HOM05D002238 ORTHO05D001984 4.4e-09 63.9 53 54.7
SalBow1G0040 Salvia bowleyana HOM05D002238 ORTHO05D001984 5.8e-09 63.5 53 56.6
Pp3c22_2380 Physcomitrium patens HOM05D002238 ORTHO05D001984 2.9e-08 61.2 53 56.6
Mapoly0032s0043 Marchantia polymorpha HOM05D002238 ORTHO05D001984 3.2e-07 57.8 53 52.8


User provided reference genes

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