Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 0.0e+00 1417.9 701 100.0
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 7.9e-273 943.7 690 69.4
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 2.0e-268 929.1 672 70.4
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 2.0e-260 902.5 656 70.7
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 8.5e-259 897.1 668 68.6
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 4.2e-258 894.8 630 72.4
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 1.4e-256 889.8 651 70.2
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 6.7e-256 887.5 652 70.2
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 8.8e-256 887.1 646 70.1
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 4.4e-255 884.8 658 68.1
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 2.8e-254 882.1 651 69.1
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 1.1e-253 880.2 629 70.3
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 4.1e-253 878.2 654 69.1
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 5.3e-253 877.9 655 68.4
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 9.1e-253 877.1 665 67.2
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 9.1e-253 877.1 654 69.0
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 5.0e-251 871.3 654 68.5
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 5.0e-251 871.3 661 66.6
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 3.2e-250 868.6 632 69.3
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 9.4e-250 867.1 652 68.4
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 9.4e-250 867.1 665 66.2
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 3.6e-249 865.1 630 69.0
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 1.4e-248 863.2 662 66.2
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 5.7e-247 857.8 628 68.9
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 1.4e-245 853.2 663 67.3
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 1.8e-245 852.8 653 66.9
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 5.3e-245 851.3 658 66.1
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 1.6e-244 849.7 689 64.2
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 2.6e-244 849.0 625 66.9
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 3.5e-244 848.6 649 67.5
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 5.9e-244 847.8 650 66.3
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 1.0e-243 847.0 630 68.4
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 1.3e-243 846.7 613 70.0
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 1.3e-243 846.7 653 67.2
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 2.2e-243 845.9 649 67.2
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 5.0e-243 844.7 642 67.1
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 5.0e-243 844.7 642 67.1
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 6.5e-243 844.3 629 68.2
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 8.5e-243 844.0 648 67.1
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 8.5e-243 844.0 663 65.3
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 1.5e-242 843.2 647 66.6
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 4.2e-242 841.6 627 68.1
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 3.6e-241 838.6 654 65.9
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 4.0e-240 835.1 650 66.3
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 2.6e-239 832.4 731 60.7
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 1.7e-238 829.7 660 64.5
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 1.1e-237 827.0 663 65.0
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 1.4e-237 826.6 652 66.0
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 1.4e-237 826.6 674 64.4
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 9.1e-237 823.9 657 65.8
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 2.0e-236 822.8 620 66.1
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 3.5e-236 822.0 643 64.7
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 6.5e-235 817.8 654 65.4
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 2.5e-234 815.8 625 65.9
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 9.4e-234 813.9 624 66.2
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 3.6e-233 812.0 653 64.8
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 1.2e-228 797.0 686 61.7
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 1.0e-227 793.9 625 63.7
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 6.6e-227 791.2 625 63.7
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 1.5e-226 790.0 625 63.4
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 4.2e-226 788.5 631 62.3
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 4.2e-226 788.5 625 63.4
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 1.2e-225 786.9 625 63.4
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 3.6e-225 785.4 625 63.0
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 1.4e-224 783.5 625 62.9
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 3.0e-224 782.3 624 63.5
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 4.0e-224 781.9 625 63.0
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 5.7e-223 778.1 661 60.1
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 1.3e-222 776.9 631 62.8
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 1.7e-222 776.5 625 62.6
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 2.8e-222 775.8 613 63.3
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 5.4e-221 771.5 586 68.6
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 1.6e-220 770.0 659 60.7
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 6.6e-219 764.6 690 59.7
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 5.6e-218 761.5 619 62.0
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 8.0e-217 757.7 620 64.2
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 1.7e-214 750.0 576 66.8
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 2.4e-213 746.1 591 66.3
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 3.5e-212 742.3 620 61.8
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 1.1e-210 737.3 620 61.3
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 9.5e-210 734.2 623 57.9
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 2.9e-206 722.6 587 63.2
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 4.9e-206 721.8 561 66.5
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 1.9e-205 719.9 639 60.6
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 2.8e-201 706.1 552 66.8
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 1.3e-198 697.2 651 59.3
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 1.3e-195 687.2 547 61.6
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 2.6e-191 672.9 527 66.8
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 1.9e-181 640.2 636 51.4
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 2.7e-180 636.3 642 50.5
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 4.9e-174 615.5 670 51.8
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 1.9e-162 577.0 596 50.2
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 3.9e-155 552.7 394 70.1
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 9.7e-154 548.1 399 69.4
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 4.5e-151 539.3 360 75.3
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 3.0e-147 526.6 607 51.1
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 1.4e-144 517.7 365 68.8
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 1.2e-135 488.0 643 46.0
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 7.7e-135 485.3 367 64.3
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 5.5e-133 479.2 405 59.8
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 3.5e-127 459.9 649 40.1
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 5.9e-127 459.1 503 51.3
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 6.1e-124 449.1 524 49.2
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 1.4e-123 448.0 351 66.1
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 4.6e-103 379.8 392 50.3
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 8.6e-94 349.0 205 82.0
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 8.3e-89 332.4 716 32.4
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 4.1e-88 330.1 265 63.8
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 9.5e-85 318.9 259 62.9
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.1e-59 235.7 160 68.8
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 5.3e-59 233.4 140 78.6
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.0e-46 192.6 158 62.0
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 1.8e-46 191.8 128 70.3
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 3.2e-40 171.0 99 75.8
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 5.3e-35 153.7 181 42.5
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 5.3e-35 153.7 160 53.8
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 1.7e-33 148.7 85 78.8
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 6.7e-30 136.7 100 56.0
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 9.4e-24 116.3 123 56.9
Actinidia09729 Actinidia chinensis HOM05D002380 ORTHO05D026288 2.2e-20 105.1 81 66.7
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 3.7e-20 104.4 62 69.4
Gohir.A07G186850 Gossypium hirsutum HOM05D002380 ORTHO05D026288 6.3e-20 103.6 75 69.3
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.3e-17 95.9 128 43.8
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 8.8e-14 83.2 92 41.3
Lj1P772T14 Lonicera japonica HOM05D002380 ORTHO05D008286 5.7e-13 80.5 83 62.7
Lalb_Chr04g0249911 Lupinus albus HOM05D002380 ORTHO05D026288 5.7e-13 80.5 49 77.6
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 5.7e-13 80.5 49 75.5
CAN.G96.10 Capsicum annuum HOM05D002380 ORTHO05D026288 2.5e-08 65.1 42 71.4


User provided reference genes

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