Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A64T36 Lonicera japonica HOM05D000060 ORTHO05D000428 4.0e-50 201.1 96 100.0
Lj1A269T39 Lonicera japonica HOM05D000060 ORTHO05D000428 8.0e-43 176.8 96 89.6
CiPaw.03G261400 Carya illinoinensis HOM05D000060 ORTHO05D000428 2.3e-21 105.5 99 60.6
Dinv22437 Davidia involucrata HOM05D000060 ORTHO05D000428 2.5e-20 102.1 99 60.6
TAR362G1043 Trochodendron aralioides HOM05D000060 ORTHO05D000428 3.6e-19 98.2 101 58.4
CSS0021263 Camellia sinensis var. sinensis HOM05D000060 ORTHO05D000428 5.2e-18 94.4 104 51.9
CSS0032138 Camellia sinensis var. sinensis HOM05D000060 ORTHO05D000428 5.2e-18 94.4 104 51.9
TAR602G0003 Trochodendron aralioides HOM05D000060 ORTHO05D000428 6.8e-18 94.0 100 56.0
Haze_24594 Corylus avellana HOM05D001448 ORTHO05D005781 1.2e-17 93.2 101 52.5
Phvul.001G159300 Phaseolus vulgaris HOM05D000060 ORTHO05D000428 1.2e-17 93.2 107 52.3
Cfa002396 Carpinus fangiana HOM05D000060 ORTHO05D000428 2.6e-17 92.0 100 51.0
Ciclev10024416m.g Citrus clementina HOM05D000060 ORTHO05D000428 5.8e-17 90.9 110 51.8
Haze_24590 Corylus avellana HOM05D001448 ORTHO05D005781 5.8e-17 90.9 101 51.5
Hma1.2p1_0273F.1_g109940 Hydrangea macrophylla HOM05D000060 ORTHO05D000428 5.8e-17 90.9 102 50.0
Glyma.19G162900 Glycine max HOM05D000060 ORTHO05D000428 2.9e-16 88.6 108 52.8
Rhsim01G0266200 Rhododendron simsii HOM05D000060 ORTHO05D000428 1.9e-15 85.9 103 51.5
vmacro14853 Vaccinium macrocarpon HOM05D000060 ORTHO05D000428 1.9e-15 85.9 101 49.5
GSVIVG01028295001 Vitis vinifera HOM05D000060 ORTHO05D000428 2.4e-15 85.5 100 52.0
Lsat_1_v5_gn_9_8941 Lactuca sativa HOM05D000060 ORTHO05D000428 5.4e-15 84.3 108 46.3
ECA247G3473 Erigeron canadensis HOM05D000060 ORTHO05D000428 9.2e-15 83.6 117 46.2
Dinv34598 Davidia involucrata HOM05D000060 ORTHO05D000428 2.1e-14 82.4 102 48.0
Oeu061426.1 Olea europaea HOM05D000060 ORTHO05D000428 2.7e-14 82.0 106 43.4
Gohir.A08G060600 Gossypium hirsutum HOM05D000060 ORTHO05D000428 3.5e-14 81.6 99 49.5
Gohir.D08G069800 Gossypium hirsutum HOM05D000060 ORTHO05D000428 4.6e-14 81.3 99 49.5
Gorai.004G073400 Gossypium raimondii HOM05D000060 ORTHO05D000428 4.6e-14 81.3 99 49.5
QL09p037784 Quercus lobata HOM05D000060 ORTHO05D000428 7.8e-14 80.5 100 49.0
Glyma.10G035000 Glycine max HOM05D000060 ORTHO05D000428 1.3e-13 79.7 101 43.6
Actinidia21192 Actinidia chinensis HOM05D000060 ORTHO05D000428 1.7e-13 79.3 107 50.5
Gohir.D11G135000 Gossypium hirsutum HOM05D000060 ORTHO05D000428 3.0e-13 78.6 101 50.5
Gohir.A11G129300 Gossypium hirsutum HOM05D000060 ORTHO05D000428 6.6e-13 77.4 101 50.5
Gorai.007G144400 Gossypium raimondii HOM05D000060 ORTHO05D000428 6.6e-13 77.4 101 49.5
Cc01_g18520 Coffea canephora HOM05D000060 ORTHO05D000428 1.5e-12 76.3 104 50.0
MSTRG.17483 Avicennia marina HOM05D000060 ORTHO05D000428 1.9e-12 75.9 109 44.0
HanXRQChr15g0467991 Helianthus annuus HOM05D000060 ORTHO05D000428 1.9e-12 75.9 101 48.5
Phvul.007G195100 Phaseolus vulgaris HOM05D000060 ORTHO05D000428 3.3e-12 75.1 102 49.0
CiPaw.04G184900 Carya illinoinensis HOM05D000060 ORTHO05D000428 7.3e-12 73.9 109 50.5
VMungo1383G2709 Vigna mungo HOM05D000060 ORTHO05D000428 7.3e-12 73.9 108 45.4
Aqoxy5G00273 Aquilegia oxysepala HOM05D000060 ORTHO05D000428 9.6e-12 73.6 102 50.0
Actinidia09564 Actinidia chinensis HOM05D000060 ORTHO05D000428 1.2e-11 73.2 107 46.7
Lsat_1_v5_gn_5_181960 Lactuca sativa HOM05D000060 ORTHO05D000428 1.2e-11 73.2 103 45.6
Aqoxy2G03610 Aquilegia oxysepala HOM05D000060 ORTHO05D000428 2.1e-11 72.4 101 44.6
HanXRQChr10g0281141 Helianthus annuus HOM05D000060 ORTHO05D000428 2.1e-11 72.4 107 43.9
Lj2P1154T56 Lonicera japonica HOM05D000060 ORTHO05D000428 2.8e-11 72.0 106 46.2
Glyma.03G161400 Glycine max HOM05D000060 ORTHO05D000428 3.6e-11 71.6 102 46.1
Lj1g0016180 Lotus japonicus HOM05D000060 ORTHO05D000428 3.6e-11 71.6 85 48.2
VMungo0720G0881 Vigna mungo HOM05D000060 ORTHO05D000428 4.7e-11 71.2 101 45.5
Peaxi162Scf00134g01213 Petunia axillaris HOM05D000060 ORTHO05D000428 1.1e-10 70.1 110 41.8
Nn3g19602 Nelumbo nucifera HOM05D000060 ORTHO05D000428 1.4e-10 69.7 103 48.5
Prupe.8G227500 Prunus persica HOM05D000060 ORTHO05D000428 1.4e-10 69.7 105 49.5
Nitab4.5_0000086g0170 Nicotiana tabacum HOM05D000060 ORTHO05D000428 4.0e-10 68.2 119 42.9
Manes.05G087800 Manihot esculenta HOM05D000060 ORTHO05D000428 5.2e-10 67.8 91 48.4
Nitab4.5_0004192g0030 Nicotiana tabacum HOM05D000060 ORTHO05D000428 6.8e-10 67.4 116 43.1
MD10G1187700 Malus domestica HOM05D000060 ORTHO05D000428 2.0e-09 65.9 107 48.6
Nn1g02699 Nelumbo nucifera HOM05D000060 ORTHO05D000428 2.6e-09 65.5 102 48.0
Gorai.001G251600 Gossypium raimondii HOM05D000060 ORTHO05D000428 4.4e-09 64.7 107 43.9
Thecc.01G261900 Theobroma cacao HOM05D000060 ORTHO05D000428 5.8e-09 64.3 101 42.6
Psat6g057280 Pisum sativum HOM05D000060 ORTHO05D000428 7.6e-09 63.9 101 41.6
HanXRQChr01g0014251 Helianthus annuus HOM05D000060 ORTHO05D000428 9.9e-09 63.5 102 43.1
Lj5g0016468 Lotus japonicus HOM05D000060 ORTHO05D000428 1.3e-08 63.2 110 44.5
PSO017G2117 Papaver somniferum HOM05D000060 ORTHO05D000428 2.2e-08 62.4 123 36.6
Gohir.A07G211200 Gossypium hirsutum HOM05D000060 ORTHO05D000428 2.9e-08 62.0 107 43.0
arahy.Tifrunner.gnm1.ann1.KW2NIT Arachis hypogaea HOM05D000060 ORTHO05D000428 3.8e-08 61.6 110 40.0
vmacro02642 Vaccinium macrocarpon HOM05D000060 ORTHO05D000428 3.8e-08 61.6 110 40.9
Atru.chr5.1641 Acer truncatum HOM05D000060 ORTHO05D000428 6.4e-08 60.8 117 41.9
DCAR_007333 Daucus carota HOM05D000060 ORTHO05D000428 6.4e-08 60.8 119 36.1
Lalb_Chr01g0019721 Lupinus albus HOM05D000060 ORTHO05D000428 8.4e-08 60.5 107 43.9
Lalb_Chr02g0142301 Lupinus albus HOM05D000060 ORTHO05D000428 1.1e-07 60.1 103 41.7
PSO063G7172 Papaver somniferum HOM05D000060 ORTHO05D000428 1.1e-07 60.1 120 36.7
Ca_08660_v3 Cicer arietinum L. HOM05D000060 ORTHO05D000428 1.4e-07 59.7 119 44.5
Duzib211G0389 Durio zibethinus HOM05D000060 ORTHO05D000428 1.9e-07 59.3 101 39.6
PGR044G0247 Punica granatum HOM05D000060 ORTHO05D000428 1.9e-07 59.3 71 54.9
Lalb_Chr06g0162491 Lupinus albus HOM05D000060 ORTHO05D000428 2.4e-07 58.9 99 42.4
FAN27G3113 Fragaria x ananassa HOM05D000060 ORTHO05D000428 4.2e-07 58.2 105 41.9
Gohir.D07G217200 Gossypium hirsutum HOM05D000060 ORTHO05D000428 4.2e-07 58.2 107 42.1
Sed0004873 Sechium edule HOM05D000060 ORTHO05D000428 4.2e-07 58.2 107 39.3
CAN.G461.12 Capsicum annuum HOM05D000060 ORTHO05D000428 5.4e-07 57.8 122 36.1
FAN15G2785 Fragaria x ananassa HOM05D000060 ORTHO05D000428 5.4e-07 57.8 106 41.5
MBI17_g17508_MAGBIO Magnolia biondii HOM05D000060 ORTHO05D000428 5.4e-07 57.8 100 40.0
Cpa.g.sc50.43 Carica papaya HOM05D000060 ORTHO05D000428 7.1e-07 57.4 110 40.9
COL.COLO4_05600 Corchorus olitorius HOM05D000060 ORTHO05D000428 9.3e-07 57.0 104 36.5
Psat3g059000 Pisum sativum HOM05D000060 ORTHO05D000428 9.3e-07 57.0 120 43.3
ClCG07G000920 Citrullus lanatus HOM05D000060 ORTHO05D000428 1.2e-06 56.6 116 38.8
Rhsim13G0032600 Rhododendron simsii HOM05D000060 ORTHO05D000428 1.2e-06 56.6 128 39.1
Rhsim13G0032300 Rhododendron simsii HOM05D000060 ORTHO05D000428 1.6e-06 56.2 129 36.4
SalBow6G2308 Salvia bowleyana HOM05D000060 ORTHO05D000428 1.6e-06 56.2 98 40.8
SalBow6G5990 Salvia bowleyana HOM05D000060 ORTHO05D000428 1.6e-06 56.2 98 40.8
Duzib133G0520 Durio zibethinus HOM05D000060 ORTHO05D000428 3.5e-06 55.1 101 38.6
Duzib138G1204 Durio zibethinus HOM05D000060 ORTHO05D000428 4.6e-06 54.7 102 40.2
FAN20G1054 Fragaria x ananassa HOM05D000060 ORTHO05D000428 6.0e-06 54.3 105 40.0
MD05G1200900 Malus domestica HOM05D000060 ORTHO05D000428 6.0e-06 54.3 104 44.2
PGSC0003DMG400009713 Solanum tuberosum HOM05D000060 ORTHO05D000428 7.8e-06 53.9 119 39.5


User provided reference genes

Program Settings