Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 4.2e-198 694.5 349 100.0
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.5e-142 510.0 341 77.4
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.2e-141 506.9 344 75.0
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.6e-141 506.5 341 76.5
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.1e-141 506.1 341 75.1
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 4.0e-140 501.9 342 74.6
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.2e-138 496.1 341 75.4
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 6.3e-138 494.6 343 73.5
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.1e-137 493.8 342 74.6
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.4e-137 493.4 348 73.9
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.8e-137 493.0 341 74.5
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.4e-137 492.7 339 76.1
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 2.4e-137 492.7 344 74.4
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 3.1e-137 492.3 345 73.6
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.6e-136 490.0 339 75.2
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.7e-136 489.2 339 74.0
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 5.9e-136 488.0 340 74.1
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 5.9e-136 488.0 340 75.3
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 7.7e-136 487.6 340 73.8
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 7.7e-136 487.6 344 72.7
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.0e-135 487.3 342 72.5
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.3e-135 486.9 341 75.1
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.3e-135 486.9 343 72.9
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 2.2e-135 486.1 340 75.0
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 2.2e-135 486.1 338 74.0
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 3.8e-135 485.3 341 73.6
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 3.8e-135 485.3 337 74.2
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 5.0e-135 485.0 342 73.1
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.1e-134 483.8 356 71.6
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.9e-134 483.0 339 74.6
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.9e-134 483.0 340 72.9
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 5.5e-134 481.5 340 72.6
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 9.4e-134 480.7 344 73.8
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 9.4e-134 480.7 343 72.3
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.2e-133 480.3 342 72.5
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 1.2e-133 480.3 343 72.3
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.2e-133 480.3 340 72.1
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.6e-133 479.9 339 72.3
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.6e-133 479.9 339 72.3
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.6e-133 479.9 339 72.9
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.6e-133 479.9 339 72.9
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 3.6e-133 478.8 342 72.2
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 3.6e-133 478.8 341 72.4
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 6.1e-133 478.0 340 72.4
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.4e-132 476.9 339 72.3
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.2e-131 473.8 340 72.1
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.5e-131 473.4 338 71.9
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 2.0e-131 473.0 341 70.7
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 2.0e-131 473.0 339 71.1
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 2.0e-131 473.0 338 72.8
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 2.6e-131 472.6 345 71.0
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.4e-131 472.2 349 70.8
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 3.4e-131 472.2 357 71.7
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 3.4e-131 472.2 339 72.0
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 4.4e-131 471.9 338 73.1
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 5.7e-131 471.5 340 70.9
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 2.8e-130 469.2 340 70.3
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 8.3e-130 467.6 340 70.0
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.4e-129 466.8 348 69.8
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 3.1e-129 465.7 338 71.0
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 4.1e-129 465.3 348 68.7
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.2e-128 463.8 343 69.7
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.5e-128 462.2 349 68.8
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 4.5e-128 461.8 343 69.1
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.0e-127 460.7 338 68.9
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.9e-127 459.1 347 68.9
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.8e-127 458.8 339 68.4
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 3.8e-127 458.8 338 69.8
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 5.0e-127 458.4 322 74.5
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 5.0e-127 458.4 353 68.0
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 6.5e-127 458.0 341 69.8
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 1.5e-126 456.8 341 68.0
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.5e-126 456.1 346 69.1
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 2.5e-126 456.1 338 68.0
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 9.5e-126 454.1 338 69.2
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.2e-125 453.8 338 69.8
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 2.8e-125 452.6 363 66.4
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 4.7e-125 451.8 343 68.2
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 6.1e-125 451.4 343 68.5
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 1.0e-124 450.7 339 68.1
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.4e-124 450.3 342 67.0
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.4e-124 450.3 342 68.7
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 4.0e-124 448.7 338 68.9
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.6e-123 446.0 338 69.8
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.4e-123 445.7 338 67.2
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.4e-123 445.3 347 66.6
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 7.5e-123 444.5 338 65.7
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 6.3e-122 441.4 398 60.3
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 2.4e-121 439.5 364 63.7
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 4.1e-121 438.7 343 66.8
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 7.0e-121 438.0 338 66.3
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.6e-120 436.8 343 66.2
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.0e-120 436.4 344 67.4
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 4.5e-120 435.3 338 66.6
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.3e-119 433.0 343 65.0
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 3.8e-119 432.2 358 63.1
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 5.0e-119 431.8 341 65.1
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.1e-118 430.6 339 66.7
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.5e-118 430.3 339 65.2
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 2.5e-118 429.5 339 64.6
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.2e-117 427.2 343 62.1
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 2.1e-117 426.4 338 63.9
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.1e-117 426.4 339 67.0
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 3.6e-117 425.6 338 66.6
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 4.7e-117 425.2 375 62.1
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 4.7e-117 425.2 342 65.2
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.0e-116 424.1 339 64.6
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 1.8e-116 423.3 341 63.0
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 2.3e-116 422.9 341 62.5
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 3.0e-116 422.5 342 62.9
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 3.0e-116 422.5 342 63.7
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 5.2e-116 421.8 342 62.6
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 5.2e-116 421.8 341 63.0
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 6.8e-116 421.4 338 63.6
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 6.8e-116 421.4 342 62.6
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 4.4e-115 418.7 342 62.3
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 5.7e-115 418.3 342 62.3
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 5.7e-115 418.3 341 62.2
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 2.9e-114 416.0 365 59.5
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.4e-113 413.7 340 64.7
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.2e-112 410.6 338 60.4
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 3.5e-112 409.1 278 75.2
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 3.5e-112 409.1 349 61.0
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.0e-111 407.5 343 63.3
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 8.0e-109 397.9 289 72.3
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 3.7e-106 389.0 346 59.8
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 3.5e-104 382.5 297 68.4
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 4.6e-104 382.1 343 59.2
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 8.6e-103 377.9 538 42.6
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 2.5e-102 376.3 279 71.0
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 5.8e-91 338.6 289 60.2
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 2.9e-90 336.3 338 52.4
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 3.9e-87 325.9 339 52.5
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.1e-86 324.3 240 70.4
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.1e-86 324.3 206 76.7
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 2.1e-85 320.1 262 65.6
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 6.2e-85 318.5 262 65.3
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.8e-84 317.0 237 69.2
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 5.8e-83 312.0 206 75.7
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.7e-79 300.4 309 52.8
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 3.9e-79 299.3 209 73.2
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 9.3e-73 278.1 163 81.0
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 3.7e-69 266.2 216 65.7
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 3.4e-67 259.6 194 69.1
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 6.7e-63 245.4 168 70.2
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 2.2e-58 230.3 164 72.6
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 3.2e-57 226.5 395 37.5
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 4.1e-52 209.5 180 61.7
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 6.9e-52 208.8 255 47.8
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.8e-47 194.1 125 77.6
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 3.3e-46 189.9 175 58.3
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 3.7e-45 186.4 178 58.4
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 3.2e-41 173.3 206 51.0
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 7.9e-40 168.7 341 37.2
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 5.2e-31 139.4 94 75.5
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.0e-30 137.5 124 56.5
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.7e-26 124.4 72 81.9
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 7.5e-22 109.0 242 32.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.2e-21 107.5 286 32.5
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 2.8e-21 107.1 364 30.5
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 5.9e-19 99.4 57 82.5
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.7e-18 97.8 246 31.3
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.2e-18 97.4 62 75.8
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 9.8e-14 82.0 93 49.5
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.6e-11 74.7 46 76.1
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 1.0e-10 72.0 45 73.3
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.1e-09 68.6 50 58.0
Cfa023540 Carpinus fangiana HOM05D000112 ORTHO05D001327 2.0e-06 57.8 35 74.3


User provided reference genes

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