Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 7.0e-62 240.4 114 100.0
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 3.6e-50 201.4 121 80.2
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 4.7e-50 201.1 121 80.2
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 6.2e-50 200.7 121 81.0
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 6.2e-50 200.7 121 80.2
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 6.2e-50 200.7 121 80.2
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 8.0e-50 200.3 121 79.3
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 1.8e-49 199.1 121 80.2
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 2.3e-49 198.7 121 79.3
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 2.3e-49 198.7 120 79.2
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 3.1e-49 198.4 121 78.5
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 4.0e-49 198.0 121 79.3
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 4.0e-49 198.0 121 79.3
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 5.2e-49 197.6 121 78.5
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 6.8e-49 197.2 121 78.5
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 8.9e-49 196.8 121 78.5
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 8.9e-49 196.8 121 77.7
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 8.9e-49 196.8 121 79.3
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 8.9e-49 196.8 121 78.5
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 1.2e-48 196.4 121 79.3
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.2e-48 196.4 121 78.5
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.5e-48 196.1 121 78.5
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 1.5e-48 196.1 121 78.5
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 2.0e-48 195.7 121 78.5
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 2.6e-48 195.3 121 78.5
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 2.6e-48 195.3 121 77.7
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 2.6e-48 195.3 121 78.5
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 2.6e-48 195.3 121 79.3
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 2.6e-48 195.3 121 77.7
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 4.4e-48 194.5 121 77.7
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 4.4e-48 194.5 121 76.9
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 5.8e-48 194.1 121 78.5
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 5.8e-48 194.1 121 77.7
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 9.8e-48 193.4 121 78.5
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 9.8e-48 193.4 121 77.7
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.3e-47 193.0 121 76.9
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 1.7e-47 192.6 121 76.9
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 1.7e-47 192.6 121 76.0
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 1.7e-47 192.6 121 77.7
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 1.7e-47 192.6 121 78.5
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 1.7e-47 192.6 121 76.9
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 2.9e-47 191.8 121 77.7
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 3.7e-47 191.4 121 76.0
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 3.7e-47 191.4 121 76.9
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 4.9e-47 191.0 121 76.0
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.9e-47 191.0 121 76.9
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.9e-47 191.0 121 76.9
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 4.9e-47 191.0 121 76.9
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 4.9e-47 191.0 121 76.9
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 6.4e-47 190.7 121 76.0
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 6.4e-47 190.7 121 76.0
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 6.4e-47 190.7 121 78.5
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 6.4e-47 190.7 121 76.9
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 8.3e-47 190.3 120 74.2
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 8.3e-47 190.3 121 76.0
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 8.3e-47 190.3 121 76.9
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 8.3e-47 190.3 120 75.0
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 8.3e-47 190.3 121 76.9
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 1.1e-46 189.9 121 76.0
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 1.1e-46 189.9 121 76.0
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 1.1e-46 189.9 121 76.0
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 1.4e-46 189.5 121 76.0
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 1.4e-46 189.5 121 76.0
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 1.9e-46 189.1 121 75.2
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 1.9e-46 189.1 121 76.0
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.9e-46 189.1 121 75.2
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 1.9e-46 189.1 121 76.0
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 3.2e-46 188.3 121 74.4
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 3.2e-46 188.3 121 76.0
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 3.2e-46 188.3 119 74.8
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 4.1e-46 188.0 121 75.2
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 4.1e-46 188.0 121 74.4
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 4.1e-46 188.0 120 73.3
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 5.4e-46 187.6 121 73.6
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 7.0e-46 187.2 121 74.4
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 7.0e-46 187.2 121 75.2
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 7.0e-46 187.2 121 76.0
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 9.2e-46 186.8 121 75.2
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 1.6e-45 186.0 119 73.9
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 1.6e-45 186.0 119 73.9
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 2.0e-45 185.7 121 76.0
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 2.0e-45 185.7 119 73.1
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 2.7e-45 185.3 121 75.2
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 2.7e-45 185.3 121 74.4
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 4.6e-45 184.5 121 74.4
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 4.6e-45 184.5 121 75.2
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 6.0e-45 184.1 121 73.6
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 6.0e-45 184.1 121 72.7
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 6.0e-45 184.1 121 72.7
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 7.8e-45 183.7 121 72.7
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.0e-44 183.3 121 74.4
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.0e-44 183.3 121 74.4
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 1.0e-44 183.3 121 73.6
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.3e-44 183.0 121 73.6
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 1.3e-44 183.0 121 72.7
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 1.3e-44 183.0 121 72.7
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 1.7e-44 182.6 121 72.7
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 2.3e-44 182.2 121 74.4
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 3.0e-44 181.8 121 73.6
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 3.0e-44 181.8 121 73.6
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 3.9e-44 181.4 121 73.6
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 3.9e-44 181.4 121 73.6
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 3.9e-44 181.4 121 73.6
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 3.9e-44 181.4 121 73.6
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 3.9e-44 181.4 121 73.6
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 3.9e-44 181.4 121 70.2
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 6.6e-44 180.6 121 72.7
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 6.6e-44 180.6 121 72.7
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 6.6e-44 180.6 121 72.7
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 8.6e-44 180.3 121 72.7
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 8.6e-44 180.3 121 72.7
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 1.1e-43 179.9 121 74.4
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 1.1e-43 179.9 113 77.9
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 1.5e-43 179.5 121 72.7
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 3.3e-43 178.3 121 71.1
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 3.3e-43 178.3 121 72.7
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 3.3e-43 178.3 121 72.7
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 3.3e-43 178.3 121 72.7
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 7.3e-43 177.2 121 70.2
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.1e-42 175.6 121 71.9
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 4.7e-42 174.5 121 69.4
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 4.7e-42 174.5 121 69.4
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 6.2e-42 174.1 119 70.6
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 6.2e-42 174.1 121 71.1
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 6.2e-42 174.1 121 71.1
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 3.1e-41 171.8 121 66.9
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 7.5e-40 167.2 170 54.7
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 4.1e-38 161.4 121 66.1
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 4.1e-38 161.4 106 73.6
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 7.1e-38 160.6 106 73.6
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 1.0e-36 156.8 121 65.3
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 3.0e-36 155.2 119 62.2
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 8.6e-36 153.7 82 85.4
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 1.9e-35 152.5 119 60.5
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 2.5e-35 152.1 121 63.6
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 8.4e-31 137.1 136 51.5
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.4e-30 136.3 72 86.1
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.1e-29 132.5 81 77.8
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.7e-29 132.1 81 77.8
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.5e-29 131.7 81 77.8
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.7e-28 129.4 75 81.3
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 3.9e-28 128.3 121 60.3
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 5.1e-28 127.9 81 75.3
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 8.6e-28 127.1 75 78.7
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 8.6e-28 127.1 75 78.7
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 8.6e-28 127.1 75 78.7
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 8.6e-28 127.1 75 78.7
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.1e-27 126.7 63 92.1
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 1.5e-27 126.3 121 59.5
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.9e-27 125.9 81 75.3
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.3e-27 125.2 75 77.3
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 4.3e-27 124.8 81 74.1
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.1e-26 122.5 81 72.8
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 2.8e-26 122.1 121 57.0
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.8e-26 122.1 75 76.0
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 4.7e-26 121.3 85 70.6
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 6.2e-26 120.9 84 67.9
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.1e-25 120.2 67 83.6
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 3.1e-25 118.6 83 66.3
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 6.9e-25 117.5 76 75.0
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 1.3e-23 113.2 128 41.4
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 8.7e-20 100.5 63 77.8
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.5e-19 99.8 106 54.7
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 6.0e-13 77.8 125 45.6
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 7.4e-11 70.9 37 89.2
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.1e-10 69.3 58 58.6
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 3.6e-10 68.6 37 89.2
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 1.4e-09 66.6 96 34.4
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 1.8e-09 66.2 37 86.5
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 2.4e-06 55.8 31 83.9


User provided reference genes

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