Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A554T16 Lonicera japonica HOM05D002722 ORTHO05D003076 1.1e-53 213.0 107 100.0
Aqoxy6G02147 Aquilegia oxysepala HOM05D002722 ORTHO05D003076 6.9e-19 97.4 101 48.5
Cc05_g02870 Coffea canephora HOM05D002722 ORTHO05D003076 1.4e-16 89.7 119 41.2
MD02G1295100 Malus domestica HOM05D002722 ORTHO05D003076 2.4e-16 89.0 102 49.0
Cc05_g02110 Coffea canephora HOM05D002722 ORTHO05D003076 4.2e-16 88.2 119 41.2
Dinv09476 Davidia involucrata HOM05D002722 ORTHO05D003076 6.0e-15 84.3 72 56.9
Rhsim02G0223300 Rhododendron simsii HOM05D002722 ORTHO05D003076 1.0e-14 83.6 90 50.0
Rhsim09G0125200 Rhododendron simsii HOM05D002722 ORTHO05D003076 1.0e-14 83.6 90 50.0
Potri.006G040600 Populus trichocarpa HOM05D002722 ORTHO05D003076 1.3e-14 83.2 81 55.6
Hund00512 Selenicereus undatus HOM05D002722 ORTHO05D003076 1.8e-14 82.8 111 42.3
Dinv34371 Davidia involucrata HOM05D002722 ORTHO05D003076 5.1e-14 81.3 72 55.6
GSVIVG01033616001 Vitis vinifera HOM05D002722 ORTHO05D003076 5.1e-14 81.3 85 45.9
Manes.08G059000 Manihot esculenta HOM05D002722 ORTHO05D003076 8.7e-14 80.5 69 53.6
Rhsim09G0083600 Rhododendron simsii HOM05D002722 ORTHO05D003076 8.7e-14 80.5 91 47.3
Sabra16G0039500 Salix brachista HOM05D002722 ORTHO05D003076 8.7e-14 80.5 98 49.0
Lj1A1095T29 Lonicera japonica HOM05D002722 ORTHO05D003076 1.1e-13 80.1 78 50.0
Nitab4.5_0007985g0020 Nicotiana tabacum HOM05D002722 ORTHO05D003076 3.3e-13 78.6 91 44.0
Potri.016G037500 Populus trichocarpa HOM05D002722 ORTHO05D003076 4.3e-13 78.2 63 61.9
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 4.3e-13 78.2 95 47.4
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 4.3e-13 78.2 95 47.4
Aa31LG10G12290 Aethionema arabicum HOM05D002722 ORTHO05D003076 5.6e-13 77.8 60 61.7
Ciclev10005540m.g Citrus clementina HOM05D002722 ORTHO05D003076 5.6e-13 77.8 95 48.4
arahy.Tifrunner.gnm1.ann1.FV4B32 Arachis hypogaea HOM05D002722 ORTHO05D003076 7.4e-13 77.4 62 59.7
arahy.Tifrunner.gnm1.ann1.PL1MYW Arachis hypogaea HOM05D002722 ORTHO05D003076 7.4e-13 77.4 62 59.7
Sabra16G0022400 Salix brachista HOM05D002722 ORTHO05D003076 7.4e-13 77.4 100 46.0
Sabra16G0029700 Salix brachista HOM05D002722 ORTHO05D003076 7.4e-13 77.4 100 46.0
Aa31LG10G11900 Aethionema arabicum HOM05D002722 ORTHO05D003076 9.6e-13 77.0 60 61.7
GSVIVG01027320001 Vitis vinifera HOM05D002722 ORTHO05D003076 9.6e-13 77.0 85 44.7
Atru.chr6.2789 Acer truncatum HOM05D002722 ORTHO05D003076 1.3e-12 76.6 67 58.2
EL10As8g23871 Beta vulgaris HOM05D002722 ORTHO05D003076 1.3e-12 76.6 81 46.9
Hma1.2p1_0004F.1_g003775 Hydrangea macrophylla HOM05D002722 ORTHO05D003076 2.1e-12 75.9 80 55.0
Nn3g17659 Nelumbo nucifera HOM05D002722 ORTHO05D003076 2.1e-12 75.9 62 58.1
RcHm_v2.0_Chr1g0324931 Rosa chinensis HOM05D002722 ORTHO05D003076 2.1e-12 75.9 84 48.8
Hund19102 Selenicereus undatus HOM05D002722 ORTHO05D003076 2.1e-12 75.9 72 51.4
Aqoxy3G03846 Aquilegia oxysepala HOM05D002722 ORTHO05D003076 2.8e-12 75.5 76 53.9
Thecc.07G138100 Theobroma cacao HOM05D002722 ORTHO05D003076 2.8e-12 75.5 73 53.4
CiPaw.09G046900 Carya illinoinensis HOM05D002722 ORTHO05D003076 3.7e-12 75.1 86 45.3
Hma1.2p1_2276F.1_g318640 Hydrangea macrophylla HOM05D002722 ORTHO05D003076 3.7e-12 75.1 126 42.1
PGR142G2871 Punica granatum HOM05D002722 ORTHO05D003076 3.7e-12 75.1 90 45.6
arahy.Tifrunner.gnm1.ann1.00JXB8 Arachis hypogaea HOM05D002722 ORTHO05D003076 4.8e-12 74.7 62 54.8
FvH4_7g03130 Fragaria vesca HOM05D002722 ORTHO05D003076 4.8e-12 74.7 114 40.4
MD14G1085000 Malus domestica HOM05D002722 ORTHO05D003076 4.8e-12 74.7 64 54.7
Oeu059335.1 Olea europaea HOM05D002722 ORTHO05D003076 4.8e-12 74.7 62 51.6
Sp5g05580 Schrenkiella parvula HOM05D002722 ORTHO05D003076 4.8e-12 74.7 75 54.7
Sed0020900 Sechium edule HOM05D002722 ORTHO05D003076 4.8e-12 74.7 113 41.6
Thecc.05G137600 Theobroma cacao HOM05D002722 ORTHO05D003076 4.8e-12 74.7 87 48.3
Migut.D02225 Erythranthe guttata HOM05D002722 ORTHO05D003076 6.2e-12 74.3 86 43.0
Eucgr.A00197 Eucalyptus grandis HOM05D002722 ORTHO05D003076 6.2e-12 74.3 89 47.2
Eucgr.A02611 Eucalyptus grandis HOM05D002722 ORTHO05D003076 6.2e-12 74.3 89 48.3
MBI10_g18308_MAGBIO Magnolia biondii HOM05D002722 ORTHO05D003076 6.2e-12 74.3 70 51.4
BcaC07g40087 Brassica carinata HOM05D002722 ORTHO05D003076 8.2e-12 73.9 63 60.3
CDE04G2576 Ceratophyllum demersum HOM05D002722 ORTHO05D003076 8.2e-12 73.9 101 40.6
FAN03G1329 Fragaria x ananassa HOM05D002722 ORTHO05D003076 8.2e-12 73.9 114 39.5
FAN10G3784 Fragaria x ananassa HOM05D002722 ORTHO05D003076 8.2e-12 73.9 114 39.5
Nitab4.5_0000125g0340 Nicotiana tabacum HOM05D002722 ORTHO05D003076 8.2e-12 73.9 91 40.7
Phvul.011G027300 Phaseolus vulgaris HOM05D002722 ORTHO05D003076 8.2e-12 73.9 62 61.3
Rhsim04G0110900 Rhododendron simsii HOM05D002722 ORTHO05D003076 8.2e-12 73.9 110 41.8
SGA_v2.0_scaffold273G46400 Striga asiatica HOM05D002722 ORTHO05D003076 8.2e-12 73.9 87 48.3
C08p32330 Brassica napus HOM05D002722 ORTHO05D003076 1.1e-11 73.6 63 60.3
BolC8t50847H Brassica oleracea HOM05D002722 ORTHO05D003076 1.1e-11 73.6 63 60.3
AUR62014167 Chenopodium quinoa HOM05D002722 ORTHO05D003076 1.1e-11 73.6 79 44.3
FAN06G2456 Fragaria x ananassa HOM05D002722 ORTHO05D003076 1.1e-11 73.6 114 39.5
Glyma.11G099000 Glycine max HOM05D002722 ORTHO05D003076 1.1e-11 73.6 61 57.4
Lsat_1_v5_gn_6_79381 Lactuca sativa HOM05D002722 ORTHO05D003076 1.1e-11 73.6 76 50.0
SHI08202 Sapria himalayana HOM05D002722 ORTHO05D003076 1.4e-11 73.2 57 59.6
SGA_v2.0_scaffold94G28531 Striga asiatica HOM05D002722 ORTHO05D003076 1.4e-11 73.2 76 50.0
THA.LOC104803263 Tarenaya hassleriana HOM05D002722 ORTHO05D003076 1.4e-11 73.2 60 58.3
arahy.Tifrunner.gnm1.ann1.9G542N Arachis hypogaea HOM05D002722 ORTHO05D003076 1.8e-11 72.8 62 53.2
MSTRG.23859 Avicennia marina HOM05D002722 ORTHO05D003076 1.8e-11 72.8 93 40.9
A09p49930 Brassica napus HOM05D002722 ORTHO05D003076 1.8e-11 72.8 63 58.7
Glyma.12G025100 Glycine max HOM05D002722 ORTHO05D003076 1.8e-11 72.8 103 41.7
Peaxi162Scf00013g01020 Petunia axillaris HOM05D002722 ORTHO05D003076 1.8e-11 72.8 80 50.0
Psat7g226520 Pisum sativum HOM05D002722 ORTHO05D003076 1.8e-11 72.8 85 48.2
Cpa.g.sc5.184 Carica papaya HOM05D002722 ORTHO05D003076 2.4e-11 72.4 75 53.3
CDE06G1766 Ceratophyllum demersum HOM05D002722 ORTHO05D003076 2.4e-11 72.4 101 41.6
AUR62003734 Chenopodium quinoa HOM05D002722 ORTHO05D003076 2.4e-11 72.4 75 46.7
HanXRQChr03g0084251 Helianthus annuus HOM05D002722 ORTHO05D003076 2.4e-11 72.4 77 50.6
Actinidia38157 Actinidia chinensis HOM05D002722 ORTHO05D003076 3.1e-11 72.0 109 38.5
ATR1098G114 Amborella trichopoda HOM05D002722 ORTHO05D003076 3.1e-11 72.0 62 53.2
BraA09t40444Z Brassica rapa HOM05D002722 ORTHO05D003076 3.1e-11 72.0 63 58.7
CSS0045331 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 3.1e-11 72.0 72 50.0
AUR62022315 Chenopodium quinoa HOM05D002722 ORTHO05D003076 3.1e-11 72.0 75 46.7
ClCG10G016150 Citrullus lanatus HOM05D002722 ORTHO05D003076 3.1e-11 72.0 117 40.2
Nitab4.5_0006579g0030 Nicotiana tabacum HOM05D002722 ORTHO05D003076 3.1e-11 72.0 91 42.9
AL5G38450 Arabidopsis lyrata HOM05D002722 ORTHO05D003076 4.0e-11 71.6 60 60.0
CAN.G506.9 Capsicum annuum HOM05D002722 ORTHO05D003076 4.0e-11 71.6 86 40.7
Ca_04642_v3 Cicer arietinum L. HOM05D002722 ORTHO05D003076 4.0e-11 71.6 81 48.1
ECA246G4177 Erigeron canadensis HOM05D002722 ORTHO05D003076 4.0e-11 71.6 63 54.0
Lj6g0004170 Lotus japonicus HOM05D002722 ORTHO05D003076 4.0e-11 71.6 60 56.7
Sopen12g008390 Solanum pennellii HOM05D002722 ORTHO05D003076 4.0e-11 71.6 91 40.7
THA.LOC104824404 Tarenaya hassleriana HOM05D002722 ORTHO05D003076 4.0e-11 71.6 63 52.4
vmacro09026 Vaccinium macrocarpon HOM05D002722 ORTHO05D003076 4.0e-11 71.6 113 39.8
MD08G1038500 Malus domestica HOM05D002722 ORTHO05D003076 5.3e-11 71.2 86 46.5
Prupe.7G040700 Prunus persica HOM05D002722 ORTHO05D003076 5.3e-11 71.2 96 42.7
Solyc12g017630.2 Solanum lycopersicum HOM05D002722 ORTHO05D003076 5.3e-11 71.2 91 39.6
BcaC07g40020 Brassica carinata HOM05D002722 ORTHO05D003076 9.0e-11 70.5 63 58.7
AUR62023903 Chenopodium quinoa HOM05D002722 ORTHO05D003076 9.0e-11 70.5 68 52.9
MELO3C009764.2 Cucumis melo HOM05D002722 ORTHO05D003076 9.0e-11 70.5 117 39.3
CsaV3_3G040270 Cucumis sativus L. HOM05D002722 ORTHO05D003076 9.0e-11 70.5 77 45.5
Lj1g0008464 Lotus japonicus HOM05D002722 ORTHO05D003076 9.0e-11 70.5 105 41.9
BcaB02g07626 Brassica carinata HOM05D002722 ORTHO05D003076 1.2e-10 70.1 86 45.3
CARHR167150 Cardamine hirsuta HOM05D002722 ORTHO05D003076 1.2e-10 70.1 76 47.4
AUR62026605 Chenopodium quinoa HOM05D002722 ORTHO05D003076 1.2e-10 70.1 76 44.7
Peaxi162Scf00105g01445 Petunia axillaris HOM05D002722 ORTHO05D003076 1.2e-10 70.1 93 41.9
Sc19g0008230 Simmondsia chinensis HOM05D002722 ORTHO05D003076 1.2e-10 70.1 95 37.9
TPR.G8394 Trifolium pratense HOM05D002722 ORTHO05D003076 1.2e-10 70.1 80 47.5
Gohir.A12G115000 Gossypium hirsutum HOM05D002722 ORTHO05D003076 1.5e-10 69.7 81 49.4
HanXRQChr13g0414121 Helianthus annuus HOM05D002722 ORTHO05D003076 1.5e-10 69.7 76 47.4
Sed0027858 Sechium edule HOM05D002722 ORTHO05D003076 1.5e-10 69.7 116 37.9
AUR62020899 Chenopodium quinoa HOM05D002722 ORTHO05D003076 2.0e-10 69.3 104 41.3
AUR62022312 Chenopodium quinoa HOM05D002722 ORTHO05D003076 2.0e-10 69.3 75 45.3
Gohir.D12G118500 Gossypium hirsutum HOM05D002722 ORTHO05D003076 2.6e-10 68.9 95 42.1
Gorai.008G128200 Gossypium raimondii HOM05D002722 ORTHO05D003076 2.6e-10 68.9 95 42.1
Mapoly0014s0080 Marchantia polymorpha HOM05D002722 ORTHO05D003076 2.6e-10 68.9 64 51.6
QL07p009818 Quercus lobata HOM05D002722 ORTHO05D003076 2.6e-10 68.9 78 44.9
Ah.00g000670 Amaranthus hybridus HOM05D002722 ORTHO05D003076 3.4e-10 68.6 96 37.5
Carub.0005s2374 Capsella rubella HOM05D002722 ORTHO05D003076 3.4e-10 68.6 62 54.8
Ca_12664_v3 Cicer arietinum L. HOM05D002722 ORTHO05D003076 3.4e-10 68.6 62 54.8
COL.COLO4_35076 Corchorus olitorius HOM05D002722 ORTHO05D003076 3.4e-10 68.6 92 43.5
DCAR_015349 Daucus carota HOM05D002722 ORTHO05D003076 3.4e-10 68.6 97 41.2
Duzib128G1110 Durio zibethinus HOM05D002722 ORTHO05D003076 3.4e-10 68.6 64 51.6
Medtr3g096190 Medicago truncatula HOM05D002722 ORTHO05D003076 3.4e-10 68.6 61 55.7
PGSC0003DMG400033615 Solanum tuberosum HOM05D002722 ORTHO05D003076 3.4e-10 68.6 84 40.5
TWI77G0285 Tripterygium wilfordii HOM05D002722 ORTHO05D003076 3.4e-10 68.6 68 50.0
Os02g0290400 Oryza sativa ssp. japonica HOM05D002722 ORTHO05D003076 4.5e-10 68.2 67 47.8
Pp3c24_11670 Physcomitrium patens HOM05D002722 ORTHO05D003076 4.5e-10 68.2 74 48.6
TPR.G22980 Trifolium pratense HOM05D002722 ORTHO05D003076 4.5e-10 68.2 61 54.1
TWI53G0099 Tripterygium wilfordii HOM05D002722 ORTHO05D003076 4.5e-10 68.2 71 49.3
VMungo1127G1646 Vigna mungo HOM05D002722 ORTHO05D003076 4.5e-10 68.2 61 55.7
AUR62021036 Chenopodium quinoa HOM05D002722 ORTHO05D003076 5.8e-10 67.8 118 39.0
EL10Ac5g11207 Beta vulgaris HOM05D002722 ORTHO05D003076 1.0e-09 67.0 96 40.6
Duzib093G1218 Durio zibethinus HOM05D002722 ORTHO05D003076 1.3e-09 66.6 60 55.0
Gohir.D12G108700 Gossypium hirsutum HOM05D002722 ORTHO05D003076 1.3e-09 66.6 89 44.9
Gorai.008G117700 Gossypium raimondii HOM05D002722 ORTHO05D003076 1.3e-09 66.6 89 44.9
Lj1A1097T43 Lonicera japonica HOM05D002722 ORTHO05D003076 1.3e-09 66.6 47 61.7
SalBow5G1745 Salvia bowleyana HOM05D002722 ORTHO05D003076 1.3e-09 66.6 75 45.3
unitig_37.g12701 Utricularia gibba HOM05D002722 ORTHO05D003076 1.3e-09 66.6 63 49.2
QL05p018587 Quercus lobata HOM05D002722 ORTHO05D003076 1.7e-09 66.2 90 43.3
QL93p1866_0204 Quercus lobata HOM05D002722 ORTHO05D003076 1.7e-09 66.2 90 43.3
SMO347G0033 Selaginella moellendorffii HOM05D002722 ORTHO05D003076 1.7e-09 66.2 49 61.2
AT3G57000 Arabidopsis thaliana HOM05D002722 ORTHO05D003076 2.2e-09 65.9 60 53.3
Actinidia17690 Actinidia chinensis HOM05D002722 ORTHO05D003076 2.9e-09 65.5 46 63.0
Medtr4g032390 Medicago truncatula HOM05D002722 ORTHO05D003076 2.9e-09 65.5 84 41.7
MCO01G479 Micromonas commoda HOM05D002722 ORTHO05D003076 2.9e-09 65.5 51 56.9
CBR_g21861 Chara braunii HOM05D002722 ORTHO05D003076 3.8e-09 65.1 46 65.2
Cc06_g19070 Coffea canephora HOM05D002722 ORTHO05D003076 3.8e-09 65.1 70 48.6
Lalb_Chr02g0156551 Lupinus albus HOM05D002722 ORTHO05D003076 3.8e-09 65.1 65 49.2
PSO017G6910 Papaver somniferum HOM05D002722 ORTHO05D003076 4.9e-09 64.7 74 45.9
PSO478G3377 Papaver somniferum HOM05D002722 ORTHO05D003076 4.9e-09 64.7 74 45.9
HPP92_003789 Vanilla planifolia HOM05D002722 ORTHO05D003076 4.9e-09 64.7 101 35.6
arahy.Tifrunner.gnm1.ann1.S7ZPK3 Arachis hypogaea HOM05D002722 ORTHO05D003076 6.5e-09 64.3 60 51.7
arahy.Tifrunner.gnm1.ann1.ZN92QR Arachis hypogaea HOM05D002722 ORTHO05D003076 6.5e-09 64.3 60 51.7
Lj7A424G25 Lonicera japonica HOM05D002722 ORTHO05D003076 6.5e-09 64.3 35 77.1
DCAR_013140 Daucus carota HOM05D002722 ORTHO05D003076 8.4e-09 63.9 87 42.5
Lalb_Chr02g0156541 Lupinus albus HOM05D002722 ORTHO05D003076 8.4e-09 63.9 66 50.0
TAR622G0121 Trochodendron aralioides HOM05D002722 ORTHO05D003076 8.4e-09 63.9 49 59.2
CSS0008082 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 1.1e-08 63.5 72 48.6
AUR62022313 Chenopodium quinoa HOM05D002722 ORTHO05D003076 1.1e-08 63.5 66 48.5
Sopen12g008460 Solanum pennellii HOM05D002722 ORTHO05D003076 1.1e-08 63.5 93 39.8
AagrBONN_evm.TU.Sc2ySwM_368.2134 Anthoceros agrestis HOM05D002722 ORTHO05D003076 1.4e-08 63.2 56 51.8
QL08p033654 Quercus lobata HOM05D002722 ORTHO05D003076 1.4e-08 63.2 113 36.3
SalBow8G4805 Salvia bowleyana HOM05D002722 ORTHO05D003076 3.2e-08 62.0 94 40.4
CANSAT64G0594 Cannabis sativa HOM05D002722 ORTHO05D003076 5.5e-08 61.2 105 34.3
Cre01.g009950 Chlamydomonas reinhardtii HOM05D002722 ORTHO05D003076 5.5e-08 61.2 48 56.2
PRCOL_00005011 Prasinoderma coloniale HOM05D002722 ORTHO05D003076 9.3e-08 60.5 49 57.1
BcaC04g18585 Brassica carinata HOM05D000493 ORTHO05D003076 2.7e-07 58.9 46 60.9
CSS0007850 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 3.5e-07 58.5 79 40.5
CSS0013149 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 3.5e-07 58.5 72 45.8
Duzib093G0615 Durio zibethinus HOM05D002722 ORTHO05D003076 4.6e-07 58.2 65 40.0
Sed0027850 Sechium edule HOM05D002722 ORTHO05D003076 6.0e-07 57.8 112 35.7
CSS0033813 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 1.0e-06 57.0 76 42.1
Medtr5g464770 Medicago truncatula HOM05D002722 ORTHO05D003076 1.3e-06 56.6 65 43.1
CANSAT80G1025 Cannabis sativa HOM05D002722 ORTHO05D003076 3.9e-06 55.1 53 52.8
Gorai.008G095800 Gossypium raimondii HOM05D002722 ORTHO05D003076 6.7e-06 54.3 111 33.3


User provided reference genes

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