Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A457T7 Lonicera japonica HOM05D003455 ORTHO05D004165 4.1e-50 201.1 99 100.0
Lj1A454T5 Lonicera japonica HOM05D003455 ORTHO05D004165 1.5e-47 192.6 97 95.9
Lj4A470T16 Lonicera japonica HOM05D003455 ORTHO05D004165 2.0e-41 172.2 89 92.1
Lju967A0G13 Lonicera japonica HOM05D003455 ORTHO05D235758 2.2e-27 125.6 99 71.7
Lj4A121T77 Lonicera japonica HOM05D003455 ORTHO05D004165 1.4e-18 96.3 117 47.0
CSS0027598 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 7.8e-17 90.5 117 46.2
CSS0034610 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 3.9e-16 88.2 117 45.3
Cfa007317 Carpinus fangiana HOM05D003455 ORTHO05D004165 6.6e-16 87.4 117 44.4
Oeu007070.2 Olea europaea HOM05D003455 ORTHO05D004165 1.9e-15 85.9 117 45.3
GSVIVG01032900001 Vitis vinifera HOM05D003455 ORTHO05D004165 1.9e-15 85.9 117 43.6
Hma1.2p1_0069F.1_g037360 Hydrangea macrophylla HOM05D003455 ORTHO05D004165 5.6e-15 84.3 106 44.3
MSTRG.15442 Avicennia marina HOM05D003455 ORTHO05D004165 7.3e-15 84.0 100 48.0
CSS0040085 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 1.2e-14 83.2 117 41.9
CAN.G497.93 Capsicum annuum HOM05D003455 ORTHO05D004165 1.2e-14 83.2 117 42.7
CsaV3_5G038560 Cucumis sativus L. HOM05D003455 ORTHO05D004165 1.2e-14 83.2 117 42.7
Dinv33837 Davidia involucrata HOM05D003455 ORTHO05D004165 1.2e-14 83.2 117 42.7
Actinidia17593 Actinidia chinensis HOM05D003455 ORTHO05D004165 1.6e-14 82.8 117 43.6
Peaxi162Scf00166g00342 Petunia axillaris HOM05D003455 ORTHO05D004165 2.1e-14 82.4 117 41.9
CiPaw.03G087400 Carya illinoinensis HOM05D003455 ORTHO05D004165 2.8e-14 82.0 117 42.7
PGSC0003DMG400001365 Solanum tuberosum HOM05D003455 ORTHO05D004165 2.8e-14 82.0 117 41.9
PGR004G0056 Punica granatum HOM05D003455 ORTHO05D004165 3.6e-14 81.6 117 43.6
TWI34G1947 Tripterygium wilfordii HOM05D003455 ORTHO05D004165 3.6e-14 81.6 117 42.7
Manes.01G094700 Manihot esculenta HOM05D003455 ORTHO05D004165 4.7e-14 81.3 117 41.9
Nn3g17485 Nelumbo nucifera HOM05D003455 ORTHO05D004165 6.2e-14 80.9 93 47.3
Nitab4.5_0009044g0070 Nicotiana tabacum HOM05D003455 ORTHO05D004165 6.2e-14 80.9 117 41.9
QL02p067326 Quercus lobata HOM05D003455 ORTHO05D004165 6.2e-14 80.9 116 42.2
QL93p0053_1015 Quercus lobata HOM05D003455 ORTHO05D004165 6.2e-14 80.9 116 42.2
THA.LOC104822323 Tarenaya hassleriana HOM05D003455 ORTHO05D004165 6.2e-14 80.9 121 43.8
Migut.K01264 Erythranthe guttata HOM05D003455 ORTHO05D004165 8.1e-14 80.5 117 42.7
Potri.004G116700 Populus trichocarpa HOM05D003455 ORTHO05D004165 8.1e-14 80.5 117 42.7
Solyc02g089070.3 Solanum lycopersicum HOM05D003455 ORTHO05D004165 8.1e-14 80.5 117 41.0
Eucgr.I02041 Eucalyptus grandis HOM05D003455 ORTHO05D004165 1.1e-13 80.1 117 42.7
Prupe.3G252000 Prunus persica HOM05D003455 ORTHO05D004165 1.1e-13 80.1 117 43.6
SalBow1G0092 Salvia bowleyana HOM05D003455 ORTHO05D004165 1.1e-13 80.1 94 45.7
Lj2g0003959 Lotus japonicus HOM05D003455 ORTHO05D004165 1.4e-13 79.7 117 41.9
TWI32G0721 Tripterygium wilfordii HOM05D003455 ORTHO05D004165 1.4e-13 79.7 117 41.0
Hma1.2p1_1555F.1_g290410 Hydrangea macrophylla HOM05D003455 ORTHO05D004165 1.8e-13 79.3 117 41.9
Sed0017731 Sechium edule HOM05D003455 ORTHO05D004165 1.8e-13 79.3 117 41.0
Sopen02g033830 Solanum pennellii HOM05D003455 ORTHO05D004165 1.8e-13 79.3 117 41.0
Glyma.13G055200 Glycine max HOM05D003455 ORTHO05D004165 3.1e-13 78.6 93 48.4
Peaxi162Scf00563g00315 Petunia axillaris HOM05D003455 ORTHO05D004165 3.1e-13 78.6 117 41.0
TAR371G0709 Trochodendron aralioides HOM05D003455 ORTHO05D004165 3.1e-13 78.6 117 40.2
CANSAT64G0930 Cannabis sativa HOM05D003455 ORTHO05D004165 4.0e-13 78.2 94 47.9
CiPaw.04G054200 Carya illinoinensis HOM05D003455 ORTHO05D004165 4.0e-13 78.2 117 41.0
Medtr6g015395 Medicago truncatula HOM05D003455 ORTHO05D004165 4.0e-13 78.2 117 41.0
Peaxi162Scf00043g00181 Petunia axillaris HOM05D003455 ORTHO05D004165 4.0e-13 78.2 117 40.2
Sabra17G0084500 Salix brachista HOM05D003455 ORTHO05D004165 4.0e-13 78.2 117 41.0
SabraUnG0001900 Salix brachista HOM05D003455 ORTHO05D004165 4.0e-13 78.2 117 41.0
arahy.Tifrunner.gnm1.ann1.87INZE Arachis hypogaea HOM05D003455 ORTHO05D004165 5.2e-13 77.8 117 39.3
Cpa.g.sc14.196 Carica papaya HOM05D003455 ORTHO05D004165 5.2e-13 77.8 117 43.6
DCAR_011034 Daucus carota HOM05D003455 ORTHO05D004165 5.2e-13 77.8 117 42.7
Gohir.D04G034300 Gossypium hirsutum HOM05D003455 ORTHO05D004165 5.2e-13 77.8 117 39.3
Lsat_1_v5_gn_2_89540 Lactuca sativa HOM05D003455 ORTHO05D004165 5.2e-13 77.8 116 42.2
Nitab4.5_0003932g0020 Nicotiana tabacum HOM05D003455 ORTHO05D004165 5.2e-13 77.8 100 44.0
Nitab4.5_0005596g0050 Nicotiana tabacum HOM05D003455 ORTHO05D004165 5.2e-13 77.8 117 40.2
Atru.chr8.508 Acer truncatum HOM05D003455 ORTHO05D004165 6.8e-13 77.4 117 41.9
Duzib147G0154 Durio zibethinus HOM05D003455 ORTHO05D004165 6.8e-13 77.4 117 40.2
Phvul.004G038200 Phaseolus vulgaris HOM05D003455 ORTHO05D004165 6.8e-13 77.4 117 41.0
COL.COLO4_02772 Corchorus olitorius HOM05D003455 ORTHO05D004165 8.9e-13 77.0 117 39.3
Phvul.007G207400 Phaseolus vulgaris HOM05D003455 ORTHO05D004165 8.9e-13 77.0 117 43.6
Ca_04310_v3 Cicer arietinum L. HOM05D003455 ORTHO05D004165 1.2e-12 76.6 117 41.0
Glyma.20G089400 Glycine max HOM05D003455 ORTHO05D004165 1.2e-12 76.6 117 41.0
Oeu004418.1 Olea europaea HOM05D003455 ORTHO05D004165 1.2e-12 76.6 116 43.1
Psat1g068920 Pisum sativum HOM05D003455 ORTHO05D004165 1.2e-12 76.6 117 40.2
VMungo0720G0561 Vigna mungo HOM05D003455 ORTHO05D004165 1.2e-12 76.6 117 42.7
Lalb_Chr06g0174911 Lupinus albus HOM05D003455 ORTHO05D004165 1.5e-12 76.3 117 41.9
Sc26g0001300 Simmondsia chinensis HOM05D003455 ORTHO05D004165 1.5e-12 76.3 117 38.5
Thecc.04G097900 Theobroma cacao HOM05D003455 ORTHO05D004165 2.0e-12 75.9 117 39.3
Duzib264G0955 Durio zibethinus HOM05D003455 ORTHO05D004165 2.6e-12 75.5 117 40.2
Gohir.A05G381100 Gossypium hirsutum HOM05D003455 ORTHO05D004165 2.6e-12 75.5 117 39.3
MBI19_g21275_MAGBIO Magnolia biondii HOM05D003455 ORTHO05D004165 2.6e-12 75.5 117 39.3
MD09G1068800 Malus domestica HOM05D003455 ORTHO05D004165 2.6e-12 75.5 93 46.2
Glyma.10G140700 Glycine max HOM05D003455 ORTHO05D004165 3.4e-12 75.1 117 40.2
HanXRQChr17g0546121 Helianthus annuus HOM05D003455 ORTHO05D004165 3.4e-12 75.1 117 41.0
Potri.017G095300 Populus trichocarpa HOM05D003455 ORTHO05D004165 3.4e-12 75.1 117 40.2
Thhalv10020815m.g Eutrema salsugineum HOM05D003455 ORTHO05D004165 4.4e-12 74.7 124 37.1
Gorai.012G038600 Gossypium raimondii HOM05D003455 ORTHO05D004165 4.4e-12 74.7 87 46.0
Manes.02G056600 Manihot esculenta HOM05D003455 ORTHO05D004165 4.4e-12 74.7 117 41.0
SGA_v2.0_scaffold154G37123 Striga asiatica HOM05D003455 ORTHO05D004165 4.4e-12 74.7 94 44.7
Lsat_1_v5_gn_3_95981 Lactuca sativa HOM05D003455 ORTHO05D004165 5.8e-12 74.3 95 45.3
CARHR197710 Cardamine hirsuta HOM05D003455 ORTHO05D004165 7.5e-12 73.9 120 40.8
Lalb_Chr02g0158861 Lupinus albus HOM05D003455 ORTHO05D004165 7.5e-12 73.9 117 40.2
Lalb_Chr21g0318331 Lupinus albus HOM05D003455 ORTHO05D004165 7.5e-12 73.9 106 42.5
Hund17038 Selenicereus undatus HOM05D003455 ORTHO05D004165 9.9e-12 73.6 115 38.3
AL6G26470 Arabidopsis lyrata HOM05D003455 ORTHO05D004165 1.3e-11 73.2 120 40.8
AT5G15610 Arabidopsis thaliana HOM05D003455 ORTHO05D004165 1.3e-11 73.2 120 40.0
HanXRQChr15g0472411 Helianthus annuus HOM05D003455 ORTHO05D004165 1.3e-11 73.2 115 40.9
Sp6g28490 Schrenkiella parvula HOM05D003455 ORTHO05D004165 1.3e-11 73.2 121 39.7
Nitab4.5_0000212g0320 Nicotiana tabacum HOM05D003455 ORTHO05D004165 1.7e-11 72.8 100 41.0
TPR.G4293 Trifolium pratense HOM05D003455 ORTHO05D004165 1.7e-11 72.8 113 39.8
ClCG11G004850 Citrullus lanatus HOM05D003455 ORTHO05D004165 2.2e-11 72.4 54 61.1
MD17G1061800 Malus domestica HOM05D003455 ORTHO05D004165 2.2e-11 72.4 104 41.3
Medtr7g091480 Medicago truncatula HOM05D003455 ORTHO05D004165 2.2e-11 72.4 117 39.3
Carub.0006s1377 Capsella rubella HOM05D003455 ORTHO05D004165 3.7e-11 71.6 112 38.4
AUR62013681 Chenopodium quinoa HOM05D003455 ORTHO05D004165 3.7e-11 71.6 117 37.6
BcaC01g04475 Brassica carinata HOM05D003455 ORTHO05D004165 4.9e-11 71.2 124 36.3
C09p75580 Brassica napus HOM05D003455 ORTHO05D004165 6.4e-11 70.9 123 35.8
AUR62004181 Chenopodium quinoa HOM05D003455 ORTHO05D004165 6.4e-11 70.9 117 36.8
unitig_748.g8420 Utricularia gibba HOM05D003455 ORTHO05D004165 8.3e-11 70.5 108 40.7
MSTRG.3364 Avicennia marina HOM05D003455 ORTHO05D004165 1.1e-10 70.1 117 40.2
Peaxi162Scf00991g00014 Petunia axillaris HOM05D003455 ORTHO05D004165 1.1e-10 70.1 136 34.6
BcaC01g04477 Brassica carinata HOM05D003455 ORTHO05D004165 1.4e-10 69.7 123 35.8
ECA246G2096 Erigeron canadensis HOM05D003455 ORTHO05D004165 1.4e-10 69.7 115 39.1
Gohir.A09G008500 Gossypium hirsutum HOM05D003455 ORTHO05D004165 1.4e-10 69.7 93 44.1
Gorai.006G009500 Gossypium raimondii HOM05D003455 ORTHO05D004165 1.4e-10 69.7 117 38.5
EL10Ac1g00859 Beta vulgaris HOM05D003455 ORTHO05D004165 1.9e-10 69.3 117 36.8
Carub.0003s0132 Capsella rubella HOM05D003455 ORTHO05D004165 1.9e-10 69.3 124 34.7
Sabra04G0070200 Salix brachista HOM05D003455 ORTHO05D004165 1.9e-10 69.3 143 35.7
Sp3g01270 Schrenkiella parvula HOM05D003455 ORTHO05D004165 2.4e-10 68.9 124 34.7
BcaC05g30332 Brassica carinata HOM05D003455 ORTHO05D004165 3.2e-10 68.6 124 35.5
Cc07_g04370 Coffea canephora HOM05D003455 ORTHO05D004165 3.2e-10 68.6 117 40.2
Aqoxy3G03656 Aquilegia oxysepala HOM05D003455 ORTHO05D004165 4.1e-10 68.2 91 42.9
Ciclev10011854m.g Citrus clementina HOM05D003455 ORTHO05D004165 4.1e-10 68.2 120 40.8
Aa31LG11G13970 Aethionema arabicum HOM05D003455 ORTHO05D004165 5.4e-10 67.8 122 38.5
ECA238G0586 Erigeron canadensis HOM05D003455 ORTHO05D004165 5.4e-10 67.8 102 43.1
Gohir.D09G007900 Gossypium hirsutum HOM05D003455 ORTHO05D004165 5.4e-10 67.8 115 37.4
Thhalv10013660m.g Eutrema salsugineum HOM05D003455 ORTHO05D004165 1.6e-09 66.2 126 36.5
A05p45080 Brassica napus HOM05D003455 ORTHO05D004165 3.5e-09 65.1 139 31.7
BraA05t23153Z Brassica rapa HOM05D003455 ORTHO05D004165 3.5e-09 65.1 139 31.7
CARHR076170 Cardamine hirsuta HOM05D003455 ORTHO05D004165 3.5e-09 65.1 124 33.1
Zm00001eb337010 Zea mays HOM05D003455 ORTHO05D004165 7.8e-09 63.9 109 35.8
PSO017G2371 Papaver somniferum HOM05D003455 ORTHO05D004165 1.3e-08 63.2 83 43.4
PSO478G0569 Papaver somniferum HOM05D003455 ORTHO05D004165 1.3e-08 63.2 83 43.4
ATR0794G008 Amborella trichopoda HOM05D003455 ORTHO05D004165 1.7e-08 62.8 114 36.8
A03p32840 Brassica napus HOM05D003455 ORTHO05D004165 1.7e-08 62.8 125 34.4
C03p39970 Brassica napus HOM05D003455 ORTHO05D004165 1.7e-08 62.8 125 34.4
BolC3t16262H Brassica oleracea HOM05D003455 ORTHO05D004165 1.7e-08 62.8 125 34.4
BraA03t12453Z Brassica rapa HOM05D003455 ORTHO05D004165 1.7e-08 62.8 125 34.4
AL3G11450 Arabidopsis lyrata HOM05D003455 ORTHO05D004165 2.3e-08 62.4 124 31.5
RcHm_v2.0_Chr2g0165551 Rosa chinensis HOM05D003455 ORTHO05D004165 2.3e-08 62.4 90 40.0
PGSC0003DMG400040047 Solanum tuberosum HOM05D003455 ORTHO05D004165 2.3e-08 62.4 64 46.9
BolC5t35100H Brassica oleracea HOM05D003455 ORTHO05D004165 5.1e-08 61.2 105 36.2
Os04g0103200 Oryza sativa ssp. japonica HOM05D003455 ORTHO05D004165 5.1e-08 61.2 87 39.1
TAR622G0123 Trochodendron aralioides HOM05D003455 ORTHO05D004165 1.9e-07 59.3 108 38.0
arahy.Tifrunner.gnm1.ann1.S4R36H Arachis hypogaea HOM05D003455 ORTHO05D004165 4.3e-07 58.2 155 29.7
FvH4_6g46660 Fragaria vesca HOM05D003455 ORTHO05D004165 4.3e-07 58.2 82 40.2
FAN02G3143 Fragaria x ananassa HOM05D003455 ORTHO05D004165 4.3e-07 58.2 82 40.2
FAN05G4304 Fragaria x ananassa HOM05D003455 ORTHO05D004165 4.3e-07 58.2 82 40.2
FAN09G2387 Fragaria x ananassa HOM05D003455 ORTHO05D004165 4.3e-07 58.2 82 40.2
FAN14G2996 Fragaria x ananassa HOM05D003455 ORTHO05D004165 4.3e-07 58.2 82 40.2
ATR0827G178 Amborella trichopoda HOM05D003455 ORTHO05D004165 2.1e-06 55.8 111 33.3
CDE09G0770 Ceratophyllum demersum HOM05D003455 ORTHO05D004165 8.1e-06 53.9 52 48.1


User provided reference genes

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