Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A454T5 Lonicera japonica HOM05D003455 ORTHO05D004165 4.8e-51 204.1 99 100.0
Lj1A457T7 Lonicera japonica HOM05D003455 ORTHO05D004165 8.5e-48 193.4 97 95.9
Lj4A470T16 Lonicera japonica HOM05D003455 ORTHO05D004165 1.3e-43 179.5 89 96.6
Lju967A0G13 Lonicera japonica HOM05D003455 ORTHO05D235758 9.8e-28 126.7 97 72.2
Lj4A121T77 Lonicera japonica HOM05D003455 ORTHO05D004165 9.2e-18 93.6 91 53.8
CSS0027598 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 5.0e-16 87.8 105 48.6
CSS0034610 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 2.5e-15 85.5 105 47.6
Hma1.2p1_0069F.1_g037360 Hydrangea macrophylla HOM05D003455 ORTHO05D004165 2.5e-15 85.5 104 45.2
Oeu007070.2 Olea europaea HOM05D003455 ORTHO05D004165 2.5e-15 85.5 92 52.2
Cfa007317 Carpinus fangiana HOM05D003455 ORTHO05D004165 5.6e-15 84.3 105 46.7
MSTRG.15442 Avicennia marina HOM05D003455 ORTHO05D004165 9.5e-15 83.6 98 48.0
GSVIVG01032900001 Vitis vinifera HOM05D003455 ORTHO05D004165 1.6e-14 82.8 98 45.9
CAN.G497.93 Capsicum annuum HOM05D003455 ORTHO05D004165 4.7e-14 81.3 98 45.9
CSS0040085 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 6.2e-14 80.9 105 43.8
Dinv33837 Davidia involucrata HOM05D003455 ORTHO05D004165 6.2e-14 80.9 91 48.4
Peaxi162Scf00166g00342 Petunia axillaris HOM05D003455 ORTHO05D004165 6.2e-14 80.9 98 44.9
CsaV3_5G038560 Cucumis sativus L. HOM05D003455 ORTHO05D004165 8.1e-14 80.5 98 44.9
Actinidia17593 Actinidia chinensis HOM05D003455 ORTHO05D004165 1.1e-13 80.1 105 45.7
PGSC0003DMG400001365 Solanum tuberosum HOM05D003455 ORTHO05D004165 1.1e-13 80.1 98 44.9
CiPaw.03G087400 Carya illinoinensis HOM05D003455 ORTHO05D004165 1.8e-13 79.3 105 44.8
SalBow1G0092 Salvia bowleyana HOM05D003455 ORTHO05D004165 1.8e-13 79.3 92 45.7
Nitab4.5_0009044g0070 Nicotiana tabacum HOM05D003455 ORTHO05D004165 2.3e-13 79.0 98 44.9
Prupe.3G252000 Prunus persica HOM05D003455 ORTHO05D004165 2.3e-13 79.0 92 48.9
THA.LOC104822323 Tarenaya hassleriana HOM05D003455 ORTHO05D004165 2.3e-13 79.0 119 42.9
Nn3g17485 Nelumbo nucifera HOM05D003455 ORTHO05D004165 3.1e-13 78.6 91 46.2
Peaxi162Scf00043g00181 Petunia axillaris HOM05D003455 ORTHO05D004165 3.1e-13 78.6 98 43.9
QL02p067326 Quercus lobata HOM05D003455 ORTHO05D004165 3.1e-13 78.6 105 44.8
QL93p0053_1015 Quercus lobata HOM05D003455 ORTHO05D004165 3.1e-13 78.6 105 44.8
Solyc02g089070.3 Solanum lycopersicum HOM05D003455 ORTHO05D004165 3.1e-13 78.6 98 43.9
PGR004G0056 Punica granatum HOM05D003455 ORTHO05D004165 4.0e-13 78.2 99 45.5
TAR371G0709 Trochodendron aralioides HOM05D003455 ORTHO05D004165 4.0e-13 78.2 96 44.8
Migut.K01264 Erythranthe guttata HOM05D003455 ORTHO05D004165 5.2e-13 77.8 105 44.8
Glyma.13G055200 Glycine max HOM05D003455 ORTHO05D004165 5.2e-13 77.8 91 48.4
Lj2g0003959 Lotus japonicus HOM05D003455 ORTHO05D004165 5.2e-13 77.8 99 44.4
TWI34G1947 Tripterygium wilfordii HOM05D003455 ORTHO05D004165 5.2e-13 77.8 105 43.8
DCAR_011034 Daucus carota HOM05D003455 ORTHO05D004165 6.8e-13 77.4 91 48.4
Eucgr.I02041 Eucalyptus grandis HOM05D003455 ORTHO05D004165 6.8e-13 77.4 91 48.4
Hma1.2p1_1555F.1_g290410 Hydrangea macrophylla HOM05D003455 ORTHO05D004165 6.8e-13 77.4 103 44.7
Nitab4.5_0003932g0020 Nicotiana tabacum HOM05D003455 ORTHO05D004165 6.8e-13 77.4 98 43.9
Nitab4.5_0005596g0050 Nicotiana tabacum HOM05D003455 ORTHO05D004165 6.8e-13 77.4 98 43.9
Sopen02g033830 Solanum pennellii HOM05D003455 ORTHO05D004165 6.8e-13 77.4 98 43.9
Manes.01G094700 Manihot esculenta HOM05D003455 ORTHO05D004165 8.9e-13 77.0 105 42.9
Peaxi162Scf00563g00315 Petunia axillaris HOM05D003455 ORTHO05D004165 8.9e-13 77.0 92 45.7
Potri.004G116700 Populus trichocarpa HOM05D003455 ORTHO05D004165 8.9e-13 77.0 105 43.8
Medtr6g015395 Medicago truncatula HOM05D003455 ORTHO05D004165 1.2e-12 76.6 91 46.2
Sed0017731 Sechium edule HOM05D003455 ORTHO05D004165 1.2e-12 76.6 98 42.9
Hund17038 Selenicereus undatus HOM05D003455 ORTHO05D004165 1.2e-12 76.6 87 46.0
CANSAT64G0930 Cannabis sativa HOM05D003455 ORTHO05D004165 1.5e-12 76.3 92 46.7
TWI32G0721 Tripterygium wilfordii HOM05D003455 ORTHO05D004165 1.5e-12 76.3 105 41.9
Cpa.g.sc14.196 Carica papaya HOM05D003455 ORTHO05D004165 2.0e-12 75.9 105 45.7
Oeu004418.1 Olea europaea HOM05D003455 ORTHO05D004165 2.0e-12 75.9 92 48.9
VMungo0720G0561 Vigna mungo HOM05D003455 ORTHO05D004165 2.0e-12 75.9 89 50.6
CiPaw.04G054200 Carya illinoinensis HOM05D003455 ORTHO05D004165 2.6e-12 75.5 105 41.9
Gohir.D04G034300 Gossypium hirsutum HOM05D003455 ORTHO05D004165 2.6e-12 75.5 91 44.0
Phvul.004G038200 Phaseolus vulgaris HOM05D003455 ORTHO05D004165 2.6e-12 75.5 91 46.2
Atru.chr8.508 Acer truncatum HOM05D003455 ORTHO05D004165 3.4e-12 75.1 91 47.3
Glyma.20G089400 Glycine max HOM05D003455 ORTHO05D004165 3.4e-12 75.1 91 46.2
Lalb_Chr06g0174911 Lupinus albus HOM05D003455 ORTHO05D004165 3.4e-12 75.1 104 43.3
Ca_04310_v3 Cicer arietinum L. HOM05D003455 ORTHO05D004165 4.4e-12 74.7 91 46.2
MD09G1068800 Malus domestica HOM05D003455 ORTHO05D004165 4.4e-12 74.7 91 46.2
Phvul.007G207400 Phaseolus vulgaris HOM05D003455 ORTHO05D004165 4.4e-12 74.7 97 46.4
Psat1g068920 Pisum sativum HOM05D003455 ORTHO05D004165 4.4e-12 74.7 91 45.1
Gorai.012G038600 Gossypium raimondii HOM05D003455 ORTHO05D004165 5.8e-12 74.3 85 45.9
Lsat_1_v5_gn_2_89540 Lactuca sativa HOM05D003455 ORTHO05D004165 5.8e-12 74.3 105 43.8
MBI19_g21275_MAGBIO Magnolia biondii HOM05D003455 ORTHO05D004165 5.8e-12 74.3 91 45.1
Nitab4.5_0000212g0320 Nicotiana tabacum HOM05D003455 ORTHO05D004165 5.8e-12 74.3 98 41.8
Sc26g0001300 Simmondsia chinensis HOM05D003455 ORTHO05D004165 5.8e-12 74.3 105 40.0
Thecc.04G097900 Theobroma cacao HOM05D003455 ORTHO05D004165 5.8e-12 74.3 91 44.0
COL.COLO4_02772 Corchorus olitorius HOM05D003455 ORTHO05D004165 7.5e-12 73.9 91 42.9
Gohir.A05G381100 Gossypium hirsutum HOM05D003455 ORTHO05D004165 7.5e-12 73.9 91 44.0
Sabra17G0084500 Salix brachista HOM05D003455 ORTHO05D004165 7.5e-12 73.9 105 41.9
SabraUnG0001900 Salix brachista HOM05D003455 ORTHO05D004165 7.5e-12 73.9 105 41.9
SGA_v2.0_scaffold154G37123 Striga asiatica HOM05D003455 ORTHO05D004165 7.5e-12 73.9 92 44.6
arahy.Tifrunner.gnm1.ann1.87INZE Arachis hypogaea HOM05D003455 ORTHO05D004165 9.9e-12 73.6 98 40.8
Duzib147G0154 Durio zibethinus HOM05D003455 ORTHO05D004165 9.9e-12 73.6 91 44.0
Glyma.10G140700 Glycine max HOM05D003455 ORTHO05D004165 9.9e-12 73.6 91 45.1
Duzib264G0955 Durio zibethinus HOM05D003455 ORTHO05D004165 1.3e-11 73.2 91 45.1
Lalb_Chr21g0318331 Lupinus albus HOM05D003455 ORTHO05D004165 1.3e-11 73.2 104 42.3
Carub.0006s1377 Capsella rubella HOM05D003455 ORTHO05D004165 1.7e-11 72.8 82 46.3
TPR.G4293 Trifolium pratense HOM05D003455 ORTHO05D004165 1.7e-11 72.8 89 46.1
Gohir.D09G007900 Gossypium hirsutum HOM05D003455 ORTHO05D004165 2.2e-11 72.4 93 44.1
Lsat_1_v5_gn_3_95981 Lactuca sativa HOM05D003455 ORTHO05D004165 2.2e-11 72.4 93 44.1
Medtr7g091480 Medicago truncatula HOM05D003455 ORTHO05D004165 2.2e-11 72.4 91 45.1
Thhalv10020815m.g Eutrema salsugineum HOM05D003455 ORTHO05D004165 2.9e-11 72.0 98 41.8
Lalb_Chr02g0158861 Lupinus albus HOM05D003455 ORTHO05D004165 2.9e-11 72.0 98 42.9
AL6G26470 Arabidopsis lyrata HOM05D003455 ORTHO05D004165 3.7e-11 71.6 88 47.7
AT5G15610 Arabidopsis thaliana HOM05D003455 ORTHO05D004165 3.7e-11 71.6 88 46.6
HanXRQChr15g0472411 Helianthus annuus HOM05D003455 ORTHO05D004165 3.7e-11 71.6 105 42.9
HanXRQChr17g0546121 Helianthus annuus HOM05D003455 ORTHO05D004165 3.7e-11 71.6 85 47.1
MD17G1061800 Malus domestica HOM05D003455 ORTHO05D004165 3.7e-11 71.6 102 41.2
ClCG11G004850 Citrullus lanatus HOM05D003455 ORTHO05D004165 6.4e-11 70.9 52 59.6
Potri.017G095300 Populus trichocarpa HOM05D003455 ORTHO05D004165 6.4e-11 70.9 105 41.0
Sp6g28490 Schrenkiella parvula HOM05D003455 ORTHO05D004165 6.4e-11 70.9 84 46.4
Manes.02G056600 Manihot esculenta HOM05D003455 ORTHO05D004165 8.3e-11 70.5 105 41.9
CARHR197710 Cardamine hirsuta HOM05D003455 ORTHO05D004165 1.1e-10 70.1 108 41.7
Aqoxy3G03656 Aquilegia oxysepala HOM05D003455 ORTHO05D004165 1.4e-10 69.7 91 44.0
AUR62013681 Chenopodium quinoa HOM05D003455 ORTHO05D004165 2.4e-10 68.9 105 39.0
Gohir.A09G008500 Gossypium hirsutum HOM05D003455 ORTHO05D004165 2.4e-10 68.9 91 44.0
MSTRG.3364 Avicennia marina HOM05D003455 ORTHO05D004165 3.2e-10 68.6 92 44.6
BcaC01g04475 Brassica carinata HOM05D003455 ORTHO05D004165 3.2e-10 68.6 112 37.5
Peaxi162Scf00991g00014 Petunia axillaris HOM05D003455 ORTHO05D004165 3.2e-10 68.6 111 36.9
unitig_748.g8420 Utricularia gibba HOM05D003455 ORTHO05D004165 3.2e-10 68.6 106 39.6
BcaC01g04477 Brassica carinata HOM05D003455 ORTHO05D004165 4.1e-10 68.2 91 40.7
C09p75580 Brassica napus HOM05D003455 ORTHO05D004165 4.1e-10 68.2 111 36.9
AUR62004181 Chenopodium quinoa HOM05D003455 ORTHO05D004165 4.1e-10 68.2 105 38.1
ECA246G2096 Erigeron canadensis HOM05D003455 ORTHO05D004165 4.1e-10 68.2 105 41.0
Gorai.006G009500 Gossypium raimondii HOM05D003455 ORTHO05D004165 4.1e-10 68.2 91 42.9
ECA238G0586 Erigeron canadensis HOM05D003455 ORTHO05D004165 9.2e-10 67.0 72 51.4
Aa31LG11G13970 Aethionema arabicum HOM05D003455 ORTHO05D004165 1.2e-09 66.6 90 44.4
Carub.0003s0132 Capsella rubella HOM05D003455 ORTHO05D004165 1.2e-09 66.6 92 38.0
Sp3g01270 Schrenkiella parvula HOM05D003455 ORTHO05D004165 1.6e-09 66.2 98 38.8
BcaC05g30332 Brassica carinata HOM05D003455 ORTHO05D004165 2.1e-09 65.9 98 39.8
Ciclev10011854m.g Citrus clementina HOM05D003455 ORTHO05D004165 2.1e-09 65.9 94 45.7
Sabra04G0070200 Salix brachista HOM05D003455 ORTHO05D004165 2.1e-09 65.9 131 35.9
Cc07_g04370 Coffea canephora HOM05D003455 ORTHO05D004165 3.5e-09 65.1 105 41.0
EL10Ac1g00859 Beta vulgaris HOM05D003455 ORTHO05D004165 4.6e-09 64.7 105 37.1
Thhalv10013660m.g Eutrema salsugineum HOM05D003455 ORTHO05D004165 4.6e-09 64.7 78 46.2
RcHm_v2.0_Chr2g0165551 Rosa chinensis HOM05D003455 ORTHO05D004165 6.0e-09 64.3 90 41.1
PSO017G2371 Papaver somniferum HOM05D003455 ORTHO05D004165 1.0e-08 63.5 83 43.4
PSO478G0569 Papaver somniferum HOM05D003455 ORTHO05D004165 1.0e-08 63.5 83 43.4
CARHR076170 Cardamine hirsuta HOM05D003455 ORTHO05D004165 1.3e-08 63.2 83 38.6
Zm00001eb337010 Zea mays HOM05D003455 ORTHO05D004165 2.3e-08 62.4 90 38.9
A05p45080 Brassica napus HOM05D003455 ORTHO05D004165 3.0e-08 62.0 115 33.9
BraA05t23153Z Brassica rapa HOM05D003455 ORTHO05D004165 3.0e-08 62.0 115 33.9
PGSC0003DMG400040047 Solanum tuberosum HOM05D003455 ORTHO05D004165 3.9e-08 61.6 62 46.8
BolC5t35100H Brassica oleracea HOM05D003455 ORTHO05D004165 8.6e-08 60.5 95 38.9
A03p32840 Brassica napus HOM05D003455 ORTHO05D004165 1.1e-07 60.1 113 35.4
C03p39970 Brassica napus HOM05D003455 ORTHO05D004165 1.1e-07 60.1 113 35.4
BolC3t16262H Brassica oleracea HOM05D003455 ORTHO05D004165 1.1e-07 60.1 113 35.4
BraA03t12453Z Brassica rapa HOM05D003455 ORTHO05D004165 1.1e-07 60.1 113 35.4
FvH4_6g46660 Fragaria vesca HOM05D003455 ORTHO05D004165 1.5e-07 59.7 82 41.5
FAN02G3143 Fragaria x ananassa HOM05D003455 ORTHO05D004165 1.5e-07 59.7 82 41.5
FAN05G4304 Fragaria x ananassa HOM05D003455 ORTHO05D004165 1.5e-07 59.7 82 41.5
FAN09G2387 Fragaria x ananassa HOM05D003455 ORTHO05D004165 1.5e-07 59.7 82 41.5
FAN14G2996 Fragaria x ananassa HOM05D003455 ORTHO05D004165 1.5e-07 59.7 82 41.5
AL3G11450 Arabidopsis lyrata HOM05D003455 ORTHO05D004165 1.9e-07 59.3 78 37.2
Os04g0103200 Oryza sativa ssp. japonica HOM05D003455 ORTHO05D004165 1.9e-07 59.3 85 37.6
ATR0794G008 Amborella trichopoda HOM05D003455 ORTHO05D004165 3.3e-07 58.5 91 39.6
TAR622G0123 Trochodendron aralioides HOM05D003455 ORTHO05D004165 2.8e-06 55.5 82 41.5
arahy.Tifrunner.gnm1.ann1.S4R36H Arachis hypogaea HOM05D003455 ORTHO05D004165 6.2e-06 54.3 129 30.2
CDE09G0770 Ceratophyllum demersum HOM05D003455 ORTHO05D004165 6.2e-06 54.3 52 48.1


User provided reference genes

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