Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1441.0 706 100.0
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1181.0 768 77.0
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1147.9 762 74.9
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1143.3 748 75.3
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1130.9 738 75.2
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1130.2 766 72.6
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1125.5 758 73.0
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1124.0 761 73.5
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1123.6 764 72.0
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1120.9 756 73.8
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1119.4 770 71.9
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1118.6 770 72.1
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1115.1 766 72.6
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1115.1 782 71.5
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1113.2 765 72.8
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1111.3 766 72.8
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1110.1 770 71.6
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1107.0 746 72.8
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1105.9 748 72.6
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1104.7 753 73.0
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1104.4 767 71.8
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1104.4 763 71.3
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1103.6 776 71.4
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1103.2 764 71.2
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1101.3 746 73.1
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1100.1 761 71.1
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1097.8 779 70.3
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1095.1 757 70.7
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1095.1 756 70.6
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1091.3 768 71.0
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1084.3 748 70.7
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1082.0 754 70.8
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1079.7 744 70.7
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1077.0 758 70.6
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1076.6 758 70.6
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1075.5 786 68.8
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1075.1 766 69.3
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 4.8e-312 1074.7 752 70.3
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 4.8e-312 1074.3 744 71.1
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 4.8e-312 1073.9 756 70.0
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 9.7e-312 1073.2 748 70.1
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 1.4e-311 1072.4 753 70.0
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 1.9e-311 1072.0 756 70.1
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 2.4e-311 1071.6 749 70.4
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 5.8e-311 1070.5 757 69.7
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 7.2e-311 1070.1 750 70.8
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 2.1e-310 1068.5 754 70.2
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 1.1e-309 1066.2 757 69.6
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 2.4e-309 1065.1 756 69.8
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 2.4e-309 1065.1 754 70.0
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 4.0e-309 1064.3 757 69.2
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 5.3e-309 1063.9 756 70.1
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 6.9e-309 1063.5 758 69.5
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 4.5e-308 1060.8 758 69.1
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 3.8e-307 1057.7 758 69.4
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 8.4e-307 1056.6 768 69.0
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 8.4e-307 1056.6 754 69.0
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 1.6e-305 1052.4 770 67.5
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 2.1e-305 1052.0 758 68.6
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 1.8e-304 1048.9 759 68.9
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 5.1e-304 1047.3 746 70.2
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 6.7e-304 1047.0 788 66.9
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 1.9e-303 1045.4 793 67.2
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 5.6e-303 1043.9 745 69.1
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 3.8e-299 1031.2 777 67.3
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 1.4e-298 1029.2 731 70.3
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 3.2e-298 1028.1 758 67.3
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 3.5e-297 1024.6 758 66.9
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 4.6e-297 1024.2 758 67.0
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 1.3e-296 1022.7 758 66.5
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 1.3e-296 1022.7 758 66.9
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 2.5e-295 1018.5 758 66.5
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 5.7e-295 1017.3 759 67.1
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 9.7e-295 1016.5 759 66.7
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 1.3e-294 1016.1 758 66.8
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 1.3e-294 1016.1 758 66.4
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 2.8e-294 1015.0 758 66.6
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 3.7e-294 1014.6 751 67.2
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 1.2e-292 1009.6 777 66.8
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 1.6e-289 999.2 691 71.9
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 2.7e-289 998.4 762 64.6
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 4.6e-289 997.7 688 72.5
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 5.0e-283 977.6 805 61.4
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 6.1e-281 970.7 781 62.7
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 2.4e-277 958.7 699 68.1
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 1.2e-276 956.4 753 64.1
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 2.0e-276 955.7 711 67.1
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 2.2e-275 952.2 742 65.0
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 1.3e-270 936.4 666 69.4
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 1.9e-266 922.5 620 73.5
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 8.8e-264 913.7 848 56.8
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 4.5e-260 901.4 688 65.4
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 1.1e-250 870.2 631 68.6
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 3.5e-244 848.6 764 54.6
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 6.8e-240 834.3 760 54.6
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 3.5e-236 822.0 756 53.4
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 7.6e-223 777.7 617 64.2
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 7.8e-220 767.7 638 60.8
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 2.4e-213 746.1 549 74.0
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 1.7e-206 723.4 636 57.9
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-185 654.1 694 48.7
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 8.7e-179 631.3 529 61.1
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 3.7e-145 519.6 359 66.0
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 1.2e-135 488.0 885 35.1
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 9.8e-122 441.8 297 70.4
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 1.4e-64 251.9 186 66.7
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 3.1e-59 234.2 149 71.8
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 5.1e-54 216.9 270 48.5
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 1.6e-47 195.3 122 73.0
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 4.1e-43 180.6 145 60.0
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 2.5e-40 171.4 128 62.5
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 4.7e-39 167.2 242 43.4
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 5.2e-38 163.7 171 53.2
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 5.7e-37 160.2 83 83.1
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 1.0e-25 122.9 113 52.2
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 4.5e-18 97.4 62 72.6
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 1.4e-14 85.9 56 73.2
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 7.5e-13 80.1 57 66.7
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 1.4e-11 75.9 42 81.0
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 5.9e-10 70.5 43 69.8
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 3.3e-08 64.7 41 75.6
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 4.7e-07 60.8 38 73.7


User provided reference genes

Program Settings