Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 5.5e-46 187.2 89 100.0
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 6.1e-45 183.7 89 96.6
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 1.4e-44 182.6 89 95.5
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 3.0e-44 181.4 89 94.4
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.0e-44 181.4 89 94.4
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.0e-44 181.4 89 94.4
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 3.0e-44 181.4 89 94.4
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 3.0e-44 181.4 89 94.4
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 3.0e-44 181.4 89 95.5
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 3.9e-44 181.0 89 94.4
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 5.1e-44 180.6 89 94.4
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 5.1e-44 180.6 89 94.4
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 5.1e-44 180.6 89 94.4
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 8.8e-44 179.9 89 93.3
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 8.8e-44 179.9 89 93.3
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 8.8e-44 179.9 89 93.3
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 8.8e-44 179.9 89 94.4
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 8.8e-44 179.9 89 93.3
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 1.1e-43 179.5 89 93.3
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 1.1e-43 179.5 89 93.3
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 1.1e-43 179.5 89 93.3
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 1.1e-43 179.5 89 93.3
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.5e-43 179.1 89 94.4
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.5e-43 179.1 89 93.3
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 1.5e-43 179.1 89 93.3
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 1.5e-43 179.1 89 93.3
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.5e-43 179.1 89 94.4
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.5e-43 179.1 89 94.4
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 2.0e-43 178.7 88 93.2
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 2.0e-43 178.7 89 95.5
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 2.0e-43 178.7 89 94.4
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 2.6e-43 178.3 89 93.3
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 2.6e-43 178.3 89 93.3
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 3.3e-43 177.9 89 93.3
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 5.7e-43 177.2 88 92.0
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 7.4e-43 176.8 89 92.1
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 7.4e-43 176.8 89 92.1
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 9.7e-43 176.4 89 91.0
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 9.7e-43 176.4 89 92.1
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.3e-42 176.0 89 91.0
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.3e-42 176.0 89 91.0
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 1.3e-42 176.0 89 92.1
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.3e-42 176.0 89 91.0
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 1.7e-42 175.6 86 94.2
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 1.7e-42 175.6 89 92.1
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 2.2e-42 175.3 86 93.0
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 2.2e-42 175.3 89 92.1
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 2.2e-42 175.3 89 92.1
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 2.8e-42 174.9 86 93.0
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 2.8e-42 174.9 88 89.8
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 2.8e-42 174.9 90 92.2
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 3.7e-42 174.5 91 92.3
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 4.8e-42 174.1 89 91.0
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 4.8e-42 174.1 89 92.1
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 6.3e-42 173.7 89 92.1
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.1e-41 172.9 85 94.1
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.1e-41 172.9 85 94.1
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.1e-41 172.9 86 91.9
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 1.1e-41 172.9 89 89.9
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.1e-41 172.9 89 91.0
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 1.1e-41 172.9 89 91.0
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 1.4e-41 172.6 86 93.0
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 1.4e-41 172.6 87 92.0
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 1.4e-41 172.6 91 91.2
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 1.8e-41 172.2 90 91.1
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 1.8e-41 172.2 87 92.0
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 1.8e-41 172.2 86 91.9
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.8e-41 172.2 90 92.2
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 2.4e-41 171.8 88 88.6
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 3.1e-41 171.4 87 90.8
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 3.1e-41 171.4 89 89.9
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 3.1e-41 171.4 89 89.9
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 3.1e-41 171.4 82 96.3
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 5.3e-41 170.6 89 91.0
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 5.3e-41 170.6 89 91.0
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 5.3e-41 170.6 89 91.0
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 5.3e-41 170.6 80 97.5
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 5.3e-41 170.6 85 92.9
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 5.3e-41 170.6 89 92.1
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 5.3e-41 170.6 85 91.8
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 7.0e-41 170.2 89 88.8
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 7.0e-41 170.2 90 90.0
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 7.0e-41 170.2 81 95.1
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 7.0e-41 170.2 81 95.1
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 7.0e-41 170.2 84 92.9
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 9.1e-41 169.9 84 92.9
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 9.1e-41 169.9 85 91.8
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 9.1e-41 169.9 82 93.9
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 1.2e-40 169.5 89 89.9
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 1.5e-40 169.1 81 95.1
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 2.0e-40 168.7 89 91.0
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 2.0e-40 168.7 89 89.9
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 2.0e-40 168.7 89 89.9
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 2.6e-40 168.3 81 95.1
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 4.5e-40 167.5 89 88.8
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 4.5e-40 167.5 85 89.4
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 4.5e-40 167.5 82 93.9
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 4.5e-40 167.5 89 88.8
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 4.5e-40 167.5 89 89.9
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 5.9e-40 167.2 85 90.6
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 5.9e-40 167.2 89 89.9
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 5.9e-40 167.2 80 95.0
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 7.7e-40 166.8 89 87.6
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 7.7e-40 166.8 82 95.1
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 7.7e-40 166.8 82 92.7
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 1.0e-39 166.4 85 89.4
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 1.0e-39 166.4 90 90.0
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.0e-39 166.4 82 93.9
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 1.3e-39 166.0 82 93.9
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 2.9e-39 164.9 97 82.5
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 2.9e-39 164.9 81 92.6
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 3.8e-39 164.5 89 86.5
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 3.8e-39 164.5 83 90.4
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 5.0e-39 164.1 95 85.3
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 6.5e-39 163.7 84 88.1
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 6.5e-39 163.7 85 87.1
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 6.5e-39 163.7 90 85.6
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 8.5e-39 163.3 87 87.4
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 1.1e-38 162.9 82 89.0
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 1.4e-38 162.5 89 85.4
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 1.4e-38 162.5 85 88.2
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 1.4e-38 162.5 75 98.7
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 1.9e-38 162.2 78 96.2
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 3.2e-38 161.4 78 92.3
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 4.2e-38 161.0 88 86.4
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 4.2e-38 161.0 99 79.8
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 5.5e-38 160.6 82 90.2
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 9.4e-38 159.8 80 90.0
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 9.4e-38 159.8 80 90.0
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 2.7e-37 158.3 75 97.3
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 3.6e-37 157.9 76 93.4
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 3.6e-37 157.9 76 92.1
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 6.1e-37 157.1 76 94.7
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 6.1e-37 157.1 77 92.2
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.8e-36 155.6 83 84.3
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 6.7e-36 153.7 89 78.7
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 1.1e-35 152.9 83 88.0
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 2.6e-35 151.8 83 81.9
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 3.3e-35 151.4 83 84.3
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 3.3e-35 151.4 83 84.3
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 5.7e-35 150.6 74 89.2
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 9.7e-35 149.8 80 85.0
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 1.3e-34 149.4 78 87.2
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 4.8e-34 147.5 82 79.3
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 8.2e-34 146.7 74 86.5
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 8.2e-34 146.7 74 86.5
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 8.2e-34 146.7 74 86.5
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 8.2e-34 146.7 74 86.5
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 5.9e-32 140.6 85 82.4
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 1.7e-31 139.0 81 76.5
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 2.2e-31 138.7 70 85.7
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 2.1e-29 132.1 70 87.1
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 2.7e-29 131.7 68 83.8
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.0e-28 129.8 90 68.9
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 4.0e-28 127.9 69 78.3
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 3.3e-27 124.8 64 87.5
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 9.7e-27 123.2 66 84.8
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 4.8e-26 120.9 60 88.3
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.0e-23 113.2 62 82.3
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 6.1e-21 104.0 55 89.1
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 8.0e-21 103.6 77 62.3
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 1.4e-20 102.8 48 97.9
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 1.1e-17 93.2 66 68.2
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 1.2e-16 89.7 44 90.9
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 1.6e-16 89.4 52 78.8
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 5.5e-14 80.9 46 78.3
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 5.5e-14 80.9 88 48.9
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.2e-13 79.7 38 89.5
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 2.1e-13 79.0 37 97.3
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 3.6e-13 78.2 47 80.9
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 4.7e-13 77.8 59 66.1
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 8.0e-13 77.0 67 59.7
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 8.0e-13 77.0 53 71.7
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 1.8e-12 75.9 39 79.5
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 1.8e-12 75.9 39 79.5
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 4.4e-11 71.2 38 89.5
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.8e-10 68.6 38 84.2
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.4e-09 66.2 51 58.8
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 9.2e-09 63.5 29 89.7
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 5.9e-08 60.8 38 81.6
MBI10_g35299_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 3.3e-06 55.1 29 82.8


User provided reference genes

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