Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 5.4e-139 497.7 254 100.0
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 2.2e-108 396.0 254 79.5
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 6.7e-105 384.4 254 76.0
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 2.5e-104 382.5 256 75.8
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 1.8e-102 376.3 254 76.4
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 1.8e-102 376.3 254 74.8
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 2.4e-102 375.9 254 77.2
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 9.0e-102 374.0 254 76.0
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 2.0e-101 372.9 251 76.1
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 3.4e-101 372.1 256 75.0
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 3.4e-101 372.1 275 70.2
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 4.5e-101 371.7 254 74.0
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 5.9e-101 371.3 252 75.8
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 1.3e-100 370.2 254 74.8
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 2.2e-100 369.4 254 72.8
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 2.9e-100 369.0 254 72.8
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 3.8e-100 368.6 253 74.7
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 5.0e-100 368.2 254 76.8
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 6.5e-100 367.9 253 75.1
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 1.9e-99 366.3 254 74.4
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 4.2e-99 365.2 262 71.4
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 4.2e-99 365.2 253 74.3
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 5.5e-99 364.8 254 74.0
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 1.2e-98 363.6 253 73.9
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 6.1e-98 361.3 259 72.2
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 1.0e-97 360.5 255 73.7
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 1.4e-97 360.1 253 72.3
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 3.9e-97 358.6 253 72.7
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 5.1e-97 358.2 253 72.7
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 8.8e-97 357.5 253 72.3
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 8.8e-97 357.5 255 74.9
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 1.1e-96 357.1 255 71.8
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 1.5e-96 356.7 253 72.3
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 1.5e-96 356.7 260 71.5
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 1.5e-96 356.7 255 73.7
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 2.5e-96 355.9 254 70.5
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 2.5e-96 355.9 252 71.4
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 3.3e-96 355.5 254 73.6
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 5.7e-96 354.8 255 73.3
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 9.7e-96 354.0 256 71.1
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 1.3e-95 353.6 250 73.2
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 2.2e-95 352.8 253 74.3
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 2.8e-95 352.4 258 70.9
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 3.7e-95 352.1 254 72.0
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 4.8e-95 351.7 253 71.5
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 1.1e-94 350.5 255 72.2
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 2.4e-94 349.4 251 68.9
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 3.1e-94 349.0 255 72.2
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 3.1e-94 349.0 251 73.3
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 4.1e-94 348.6 250 72.0
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 4.1e-94 348.6 259 70.3
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 4.1e-94 348.6 253 71.5
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 4.1e-94 348.6 254 70.9
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 5.3e-94 348.2 253 71.9
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 5.3e-94 348.2 252 71.0
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 9.1e-94 347.4 256 70.7
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 9.1e-94 347.4 257 70.4
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 1.2e-93 347.1 258 70.2
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 1.2e-93 347.1 251 72.1
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 1.2e-93 347.1 251 72.1
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 1.5e-93 346.7 258 69.4
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 2.0e-93 346.3 252 71.0
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 2.2e-92 342.8 258 69.0
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 2.9e-92 342.4 257 70.0
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 2.9e-92 342.4 257 70.0
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 2.9e-92 342.4 255 70.2
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 5.0e-92 341.7 258 69.0
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 5.0e-92 341.7 255 68.2
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 6.5e-92 341.3 257 68.1
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 6.5e-92 341.3 257 68.5
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 1.1e-91 340.5 258 68.6
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 1.1e-91 340.5 258 68.6
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 2.5e-91 339.3 257 68.9
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 3.2e-91 339.0 257 69.6
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 5.5e-91 338.2 268 68.3
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 7.2e-91 337.8 256 69.5
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 7.2e-91 337.8 223 77.1
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 3.6e-90 335.5 264 67.4
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 4.7e-90 335.1 250 70.4
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 6.1e-90 334.7 255 70.2
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 6.1e-90 334.7 270 67.8
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 6.1e-90 334.7 255 67.8
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 1.0e-89 334.0 239 69.9
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 1.8e-89 333.2 252 69.8
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 6.7e-89 331.3 238 72.7
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 7.4e-88 327.8 263 65.4
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 7.4e-88 327.8 263 66.5
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 9.7e-88 327.4 239 71.1
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 1.3e-87 327.0 236 71.2
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 3.7e-87 325.5 255 65.5
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 1.1e-86 323.9 258 69.0
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 1.4e-86 323.6 306 59.5
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 1.6e-85 320.1 241 67.6
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 8.0e-82 307.8 255 62.0
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 1.4e-81 307.0 253 62.1
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 4.0e-81 305.4 242 69.0
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 3.3e-80 302.4 257 62.6
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 2.2e-79 299.7 234 66.2
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 7.0e-78 294.7 256 63.7
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 1.2e-77 293.9 256 61.3
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 3.5e-77 292.4 205 74.6
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 3.5e-77 292.4 255 59.2
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 5.9e-77 291.6 257 61.1
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 2.2e-76 289.7 203 73.9
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 1.2e-74 283.9 257 58.4
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.0e-73 280.8 220 68.6
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 5.2e-73 278.5 194 73.7
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 2.2e-68 263.1 162 79.6
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 5.0e-68 261.9 237 61.6
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 1.5e-67 260.4 207 64.7
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 4.4e-64 248.8 246 57.7
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 7.5e-64 248.1 264 53.8
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 2.2e-63 246.5 184 67.4
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 5.9e-61 238.4 178 71.9
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 6.1e-58 228.4 220 55.5
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 4.4e-56 222.2 220 58.6
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 1.1e-51 207.6 258 50.4
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 1.1e-51 207.6 255 48.6
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 8.0e-50 201.4 117 85.5
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 3.2e-46 189.5 137 67.9
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 4.1e-46 189.1 149 67.8
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 1.2e-42 177.6 103 83.5
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 6.2e-42 175.3 140 65.0
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 4.1e-38 162.5 269 39.4
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 9.2e-38 161.4 140 63.6
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 2.7e-29 133.3 89 76.4
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 1.3e-28 131.0 65 89.2
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 6.9e-25 118.6 155 49.0
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 7.6e-24 115.2 55 92.7
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 5.1e-20 102.4 75 62.7
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 2.1e-18 97.1 75 65.3
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 3.6e-18 96.3 73 68.5
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 6.9e-17 92.0 78 62.8
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 1.3e-15 87.8 76 60.5
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 4.9e-15 85.9 70 70.0
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 5.6e-11 72.4 60 61.7
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 8.1e-10 68.6 55 69.1
TAR005G0002 Trochodendron aralioides HOM05D005643 ORTHO05D006819 4.5e-08 62.8 71 50.7
PRCOL_00006457 Prasinoderma coloniale HOM05D005643 ORTHO05D006819 9.9e-08 61.6 146 34.2


User provided reference genes

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