Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A123G47 Lonicera japonica HOM05D002376 ORTHO05D008821 2.8e-70 268.5 135 100.0
Dinv28710 Davidia involucrata HOM05D002376 ORTHO05D008821 4.4e-55 218.0 134 83.6
vmacro02895 Vaccinium macrocarpon HOM05D002376 ORTHO05D008821 2.4e-53 212.2 135 80.0
GSVIVG01024598001 Vitis vinifera HOM05D002376 ORTHO05D008821 1.7e-51 206.1 130 78.5
Migut.H01101 Erythranthe guttata HOM05D002376 ORTHO05D008821 3.9e-51 204.9 133 75.9
Cfa010938 Carpinus fangiana HOM05D002376 ORTHO05D008821 6.6e-51 204.1 134 76.1
Haze_24442 Corylus avellana HOM05D002376 ORTHO05D008821 6.6e-51 204.1 131 77.1
TAR623G0666 Trochodendron aralioides HOM05D002376 ORTHO05D008821 6.6e-51 204.1 132 76.5
TAR287G0002 Trochodendron aralioides HOM05D002376 ORTHO05D008821 8.6e-51 203.8 134 75.4
CSS0028475 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.1e-50 203.4 134 76.9
Manes.18G140300 Manihot esculenta HOM05D002376 ORTHO05D008821 1.1e-50 203.4 129 79.8
Rhsim13G0061900 Rhododendron simsii HOM05D002376 ORTHO05D008821 1.5e-50 203.0 150 72.0
CSS0003249 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 3.3e-50 201.8 126 77.8
HanXRQChr01g0012551 Helianthus annuus HOM05D002376 ORTHO05D008821 1.6e-49 199.5 132 74.2
Nitab4.5_0000755g0130 Nicotiana tabacum HOM05D002376 ORTHO05D008821 2.1e-49 199.1 123 79.7
CiPaw.13G066200 Carya illinoinensis HOM05D002376 ORTHO05D008821 8.1e-49 197.2 134 73.9
Sopen11g027160 Solanum pennellii HOM05D002376 ORTHO05D008821 8.1e-49 197.2 133 73.7
Lsat_1_v5_gn_5_175460 Lactuca sativa HOM05D002376 ORTHO05D008821 1.4e-48 196.4 130 74.6
ClCG02G019170 Citrullus lanatus HOM05D002376 ORTHO05D008821 1.8e-48 196.1 131 72.5
SalBow2G0685 Salvia bowleyana HOM05D002376 ORTHO05D008821 2.3e-48 195.7 133 72.9
Sed0011436 Sechium edule HOM05D002376 ORTHO05D008821 4.0e-48 194.9 131 72.5
Solyc11g068450.2 Solanum lycopersicum HOM05D002376 ORTHO05D008821 4.0e-48 194.9 133 72.9
PGSC0003DMG400026358 Solanum tuberosum HOM05D002376 ORTHO05D008821 4.0e-48 194.9 133 72.2
CANSAT54G2364 Cannabis sativa HOM05D002376 ORTHO05D008821 5.2e-48 194.5 129 75.2
Peaxi162Scf00003g00413 Petunia axillaris HOM05D002376 ORTHO05D008821 6.8e-48 194.1 130 73.1
Nitab4.5_0009324g0020 Nicotiana tabacum HOM05D002376 ORTHO05D008821 1.2e-47 193.4 123 77.2
Thecc.09G361000 Theobroma cacao HOM05D002376 ORTHO05D008821 1.2e-47 193.4 134 73.9
COL.COLO4_11184 Corchorus olitorius HOM05D002376 ORTHO05D008821 1.5e-47 193.0 131 74.8
Duzib168G1911 Durio zibethinus HOM05D002376 ORTHO05D008821 4.4e-47 191.4 132 73.5
DCAR_014464 Daucus carota HOM05D002376 ORTHO05D008821 5.8e-47 191.0 130 73.8
QL03p067094 Quercus lobata HOM05D002376 ORTHO05D008821 5.8e-47 191.0 134 71.6
Prupe.6G044100 Prunus persica HOM05D002376 ORTHO05D008821 7.5e-47 190.7 134 70.1
Cc01_g09100 Coffea canephora HOM05D002376 ORTHO05D008821 1.3e-46 189.9 133 72.9
TWI75G1859 Tripterygium wilfordii HOM05D002376 ORTHO05D008821 1.7e-46 189.5 122 76.2
MD11G1061300 Malus domestica HOM05D002376 ORTHO05D008821 2.2e-46 189.1 134 69.4
CsaV3_6G019000 Cucumis sativus L. HOM05D002376 ORTHO05D008821 2.9e-46 188.7 131 70.2
SalBow2G2295 Salvia bowleyana HOM05D002376 ORTHO05D008821 3.7e-46 188.3 133 69.9
MELO3C025682.2 Cucumis melo HOM05D002376 ORTHO05D008821 6.4e-46 187.6 131 69.5
Actinidia23182 Actinidia chinensis HOM05D002376 ORTHO05D008821 8.3e-46 187.2 115 80.9
BcaB01g04113 Brassica carinata HOM05D002376 ORTHO05D008821 8.3e-46 187.2 133 68.4
THA.LOC104800780 Tarenaya hassleriana HOM05D002376 ORTHO05D008821 1.4e-45 186.4 125 73.6
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 1.9e-45 186.0 133 67.7
Oeu064671.1 Olea europaea HOM05D000883 ORTHO05D002942 4.1e-45 184.9 133 72.2
PGR102G2282 Punica granatum HOM05D002376 ORTHO05D008821 5.4e-45 184.5 122 75.4
CARHR123650 Cardamine hirsuta HOM05D002376 ORTHO05D008821 1.2e-44 183.3 133 66.9
Ciclev10017044m.g Citrus clementina HOM05D002376 ORTHO05D008821 1.2e-44 183.3 124 72.6
RcHm_v2.0_Chr5g0072361 Rosa chinensis HOM05D002376 ORTHO05D008821 1.2e-44 183.3 126 69.8
BcaC01g05988 Brassica carinata HOM05D002376 ORTHO05D008821 1.6e-44 183.0 133 66.9
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 1.6e-44 183.0 133 66.9
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 1.6e-44 183.0 133 66.9
Thhalv10017367m.g Eutrema salsugineum HOM05D002376 ORTHO05D008821 2.1e-44 182.6 133 66.2
Carub.0004s1148 Capsella rubella HOM05D002376 ORTHO05D008821 2.7e-44 182.2 133 65.4
Gorai.003G151600 Gossypium raimondii HOM05D002376 ORTHO05D008821 1.0e-43 180.3 124 74.2
Sp4g12890 Schrenkiella parvula HOM05D002376 ORTHO05D008821 1.7e-43 179.5 129 66.7
Aa31LG5G6370 Aethionema arabicum HOM05D002376 ORTHO05D008821 3.0e-43 178.7 129 67.4
Aqoxy4G02143 Aquilegia oxysepala HOM05D002376 ORTHO05D008821 3.0e-43 178.7 129 69.0
AL4G25190 Arabidopsis lyrata HOM05D002376 ORTHO05D008821 3.0e-43 178.7 133 64.7
Sabra13G0126300 Salix brachista HOM05D002376 ORTHO05D008821 3.0e-43 178.7 128 71.9
Eucgr.B04014 Eucalyptus grandis HOM05D002376 ORTHO05D008821 3.9e-43 178.3 124 69.4
Eucgr.B04017 Eucalyptus grandis HOM05D002376 ORTHO05D008821 3.9e-43 178.3 124 69.4
Gohir.D03G144300 Gossypium hirsutum HOM05D002376 ORTHO05D008821 3.9e-43 178.3 124 73.4
PSO170G0682 Papaver somniferum HOM05D002376 ORTHO05D008821 8.6e-43 177.2 124 67.7
AT2G30330 Arabidopsis thaliana HOM05D002376 ORTHO05D008821 1.5e-42 176.4 129 65.9
Gohir.A03G024200 Gossypium hirsutum HOM05D002376 ORTHO05D008821 1.5e-42 176.4 124 72.6
FvH4_3g40170 Fragaria vesca HOM05D002376 ORTHO05D008821 4.3e-42 174.9 125 65.6
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 5.6e-42 174.5 122 68.0
ATR0586G003 Amborella trichopoda HOM05D002376 ORTHO05D008821 1.6e-41 172.9 130 62.3
CDE06G1730 Ceratophyllum demersum HOM05D002376 ORTHO05D008821 2.1e-41 172.6 121 66.1
Glyma.02G234100 Glycine max HOM05D002376 ORTHO05D008821 2.8e-41 172.2 127 70.1
Potri.013G156700 Populus trichocarpa HOM05D002376 ORTHO05D008821 3.6e-41 171.8 130 66.2
Atru.chr6.2418 Acer truncatum HOM05D002376 ORTHO05D008821 4.7e-41 171.4 132 62.9
Phvul.008G249600 Phaseolus vulgaris HOM05D002376 ORTHO05D008821 6.2e-41 171.0 127 69.3
LjContig00141g0012114 Lotus japonicus HOM05D002376 ORTHO05D008821 8.1e-41 170.6 127 68.5
TPR.G17753 Trifolium pratense HOM05D002376 ORTHO05D008821 8.1e-41 170.6 128 69.5
arahy.Tifrunner.gnm1.ann1.F02FPT Arachis hypogaea HOM05D002376 ORTHO05D008821 1.1e-40 170.2 128 68.0
Medtr5g074880 Medicago truncatula HOM05D002376 ORTHO05D008821 2.3e-40 169.1 129 68.2
HPP92_009016 Vanilla planifolia HOM05D002376 ORTHO05D008821 2.3e-40 169.1 132 62.1
AUR62009722 Chenopodium quinoa HOM05D002376 ORTHO05D008821 2.6e-39 165.6 123 67.5
Dinv12257 Davidia involucrata HOM05D002376 ORTHO05D008821 5.8e-39 164.5 99 85.9
Lalb_Chr17g0345531 Lupinus albus HOM05D002376 ORTHO05D008821 7.6e-39 164.1 132 65.2
Actinidia32596 Actinidia chinensis HOM05D002376 ORTHO05D008821 9.9e-39 163.7 104 76.9
Ah.15g096510 Amaranthus hybridus HOM05D002376 ORTHO05D008821 9.9e-39 163.7 122 68.0
Os11g0112300 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 1.7e-38 162.9 124 64.5
EL10Ac7g15863 Beta vulgaris HOM05D002376 ORTHO05D008821 2.2e-38 162.5 122 66.4
CAN.G1358.8 Capsicum annuum HOM05D002376 ORTHO05D008821 2.2e-38 162.5 104 76.0
AUR62036225 Chenopodium quinoa HOM05D002376 ORTHO05D008821 8.4e-38 160.6 123 65.9
Eucgr.L02725 Eucalyptus grandis HOM05D002376 ORTHO05D008821 3.2e-37 158.7 107 72.0
Lalb_Chr10g0103701 Lupinus albus HOM05D002376 ORTHO05D008821 3.2e-37 158.7 120 65.8
Nn4g26021 Nelumbo nucifera HOM05D002376 ORTHO05D008821 1.2e-36 156.8 103 74.8
Eucgr.B02271 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.6e-36 156.4 107 71.0
Prupe.6G095400 Prunus persica HOM05D002376 ORTHO05D008821 4.6e-36 154.8 122 65.6
Psat2g052040 Pisum sativum HOM05D002376 ORTHO05D008821 6.0e-36 154.5 153 58.2
arahy.Tifrunner.gnm1.ann1.6WW78Y Arachis hypogaea HOM05D002376 ORTHO05D008821 5.1e-35 151.4 171 51.5
Cpa.g.sc2.331 Carica papaya HOM05D002376 ORTHO05D008821 5.1e-35 151.4 104 75.0
CSS0017661 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 3.3e-34 148.7 96 77.1
MBI15_g06972_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 2.1e-33 146.0 174 46.0
MD03G1059100 Malus domestica HOM05D002376 ORTHO05D008821 1.1e-32 143.7 138 58.0
Sc06g0008070 Simmondsia chinensis HOM05D002376 ORTHO05D008821 4.0e-32 141.7 96 74.0
COL.COLO4_11185 Corchorus olitorius HOM05D002376 ORTHO05D008821 1.5e-31 139.8 101 72.3
PSO017G2121 Papaver somniferum HOM05D002376 ORTHO05D008821 1.5e-31 139.8 103 63.1
SGA_v2.0_scaffold77G25373 Striga asiatica HOM05D002376 ORTHO05D008821 2.9e-30 135.6 103 67.0
Pp3c20_8500 Physcomitrium patens HOM05D002376 ORTHO05D008821 4.6e-28 128.3 120 50.8
AagrBONN_evm.TU.Sc2ySwM_228.448 Anthoceros agrestis HOM05D002376 ORTHO05D008821 6.0e-28 127.9 121 51.2
Mapoly0069s0031 Marchantia polymorpha HOM05D002376 ORTHO05D008821 6.0e-28 127.9 122 50.8
FAN21G3738 Fragaria x ananassa HOM05D002376 ORTHO05D008821 1.3e-27 126.7 97 61.9
FAN11G0211 Fragaria x ananassa HOM05D002376 ORTHO05D008821 8.7e-27 124.0 97 59.8
Hund18966 Selenicereus undatus HOM05D002376 ORTHO05D008821 8.7e-27 124.0 94 67.0
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 1.5e-26 123.2 93 68.8
FAN16G0225 Fragaria x ananassa HOM05D002376 ORTHO05D008821 2.5e-26 122.5 97 58.8
Ca_05691_v3 Cicer arietinum L. HOM05D002376 ORTHO05D008821 5.3e-24 114.8 98 63.3
Os12g0416500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 2.9e-22 109.0 94 61.7
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 5.1e-19 98.2 101 42.6
SHI19244 Sapria himalayana HOM05D002376 ORTHO05D008821 8.7e-19 97.4 90 60.0
MBI15_g36803_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 1.5e-18 96.7 129 41.9
Zm00001eb276260 Zea mays HOM05D002376 ORTHO05D008821 4.3e-18 95.1 74 62.2
SMO361G0428 Selaginella moellendorffii HOM05D002376 ORTHO05D008821 7.4e-18 94.4 99 46.5
MBI07_g35969_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 1.3e-17 93.6 69 63.8
Os12g0111900 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 2.8e-17 92.4 94 52.1
MD03G1104100 Malus domestica HOM05D002376 ORTHO05D008821 8.4e-14 80.9 129 38.8
ECA248G3831 Erigeron canadensis HOM05D002376 ORTHO05D008821 3.2e-13 79.0 63 65.1
MCO04G004 Micromonas commoda HOM05D002376 ORTHO05D008821 3.0e-11 72.4 113 31.0


User provided reference genes

Program Settings