Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 2.9e-111 405.2 201 100.0
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 3.1e-44 182.6 335 39.7
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 3.6e-37 159.1 306 38.2
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 8.3e-34 147.9 182 50.0
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 4.1e-33 145.6 271 39.9
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 5.4e-33 145.2 187 49.2
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 5.4e-33 145.2 187 49.2
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 3.5e-32 142.5 187 47.6
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 7.8e-32 141.4 199 47.2
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 8.6e-31 137.9 199 46.2
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 1.1e-30 137.5 182 45.6
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 2.5e-30 136.3 187 47.1
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 2.5e-30 136.3 178 47.8
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 5.6e-30 135.2 181 48.6
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 2.1e-29 133.3 183 45.9
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 4.7e-29 132.1 187 44.4
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 6.2e-29 131.7 180 45.6
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 6.2e-29 131.7 187 45.5
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 1.8e-28 130.2 332 33.1
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 2.4e-28 129.8 182 46.2
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 4.0e-28 129.0 209 42.6
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 4.0e-28 129.0 187 41.7
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 5.2e-28 128.6 184 42.9
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 5.2e-28 128.6 184 42.9
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 5.2e-28 128.6 181 46.4
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 5.2e-28 128.6 181 46.4
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 6.8e-28 128.3 188 44.1
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 6.8e-28 128.3 173 42.2
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 6.8e-28 128.3 184 42.9
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 1.5e-27 127.1 199 42.7
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 2.0e-27 126.7 187 43.3
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 4.4e-27 125.6 188 42.6
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 5.8e-27 125.2 177 42.9
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 1.3e-26 124.0 187 41.2
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 2.2e-26 123.2 181 45.3
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 2.9e-26 122.9 186 42.5
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 4.9e-26 122.1 187 41.7
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 4.9e-26 122.1 185 41.6
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 6.4e-26 121.7 180 44.4
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 6.4e-26 121.7 161 48.4
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 1.1e-25 120.9 182 43.4
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 1.9e-25 120.2 196 43.9
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 3.2e-25 119.4 196 42.9
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 3.2e-25 119.4 196 43.4
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 4.2e-25 119.0 167 42.5
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 4.2e-25 119.0 191 42.9
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 5.4e-25 118.6 186 41.9
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 7.1e-25 118.2 342 31.3
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 1.2e-24 117.5 196 43.9
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 2.1e-24 116.7 189 43.4
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 2.7e-24 116.3 187 41.7
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 3.5e-24 115.9 185 41.1
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 6.0e-24 115.2 181 42.0
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 7.8e-24 114.8 181 41.4
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 1.0e-23 114.4 192 42.7
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.3e-23 113.2 187 40.6
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 3.0e-23 112.8 187 40.1
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 3.9e-23 112.5 179 40.2
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 5.1e-23 112.1 193 42.0
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 5.1e-23 112.1 181 40.9
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 5.1e-23 112.1 181 40.9
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 6.6e-23 111.7 192 39.6
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 6.6e-23 111.7 196 42.3
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.1e-22 110.9 187 39.6
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 1.5e-22 110.5 184 39.7
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.5e-22 110.5 187 39.6
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.5e-22 109.8 187 41.2
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 2.5e-22 109.8 186 40.3
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 3.3e-22 109.4 186 39.8
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 1.6e-21 107.1 184 39.1
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 4.7e-21 105.5 205 40.0
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 4.7e-21 105.5 191 39.3
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 1.4e-20 104.0 186 36.6
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 4.0e-20 102.4 189 39.7
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 5.3e-20 102.1 192 39.6
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 4.4e-19 99.0 181 38.1
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 4.4e-19 99.0 200 38.5
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 7.6e-19 98.2 184 38.0
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 9.9e-19 97.8 194 38.1
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 3.8e-18 95.9 187 38.5
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 4.9e-18 95.5 186 34.4
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 6.4e-18 95.1 186 34.4
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 6.4e-18 95.1 186 33.3
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 6.4e-18 95.1 188 36.2
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 1.4e-17 94.0 186 33.9
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 1.4e-17 94.0 186 33.9
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 1.4e-17 94.0 166 37.3
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 2.4e-17 93.2 193 35.2
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 3.2e-17 92.8 186 33.3
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 3.2e-17 92.8 184 32.6
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 4.2e-17 92.4 186 33.9
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 5.4e-17 92.0 186 33.3
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 5.4e-17 92.0 181 35.4
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 7.1e-17 91.7 192 35.9
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 9.3e-17 91.3 186 32.3
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 1.2e-16 90.9 186 33.3
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 1.6e-16 90.5 186 32.3
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 3.5e-16 89.4 186 33.3
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 6.0e-16 88.6 213 32.4
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 3.0e-15 86.3 189 32.3
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 3.0e-15 86.3 206 32.5
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 3.9e-15 85.9 155 40.6
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 1.9e-14 83.6 186 33.3
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 4.3e-14 82.4 168 34.5
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 3.6e-13 79.3 181 29.8
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 6.2e-13 78.6 158 35.4
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 3.4e-11 72.8 84 46.4
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 3.4e-11 72.8 135 35.6
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 2.2e-10 70.1 171 31.0
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 8.4e-10 68.2 184 27.7
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 9.6e-06 54.7 170 28.2


User provided reference genes

Program Settings