Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 6.2e-26 119.8 51 100.0
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 3.6e-18 94.0 47 89.4
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 5.2e-17 90.1 47 83.0
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 5.2e-17 90.1 47 85.1
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 6.8e-17 89.7 47 83.0
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 8.9e-17 89.4 44 86.4
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 2.6e-16 87.8 47 80.9
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 9.9e-16 85.9 46 82.6
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 2.2e-15 84.7 47 80.9
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 1.9e-14 81.6 47 72.3
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 1.6e-13 78.6 47 70.2
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.1e-13 78.2 47 78.7
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 2.1e-13 78.2 47 76.6
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 2.7e-13 77.8 47 76.6
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 3.5e-13 77.4 47 70.2
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 3.5e-13 77.4 44 70.5
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 4.6e-13 77.0 47 68.1
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 6.0e-13 76.6 46 73.9
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 6.0e-13 76.6 47 70.2
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 7.8e-13 76.3 47 66.0
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 7.8e-13 76.3 47 76.6
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 7.8e-13 76.3 47 76.6
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.0e-12 75.9 46 73.9
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.0e-12 75.9 47 74.5
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.3e-12 75.5 46 71.7
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.3e-12 75.5 47 76.6
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 1.7e-12 75.1 49 71.4
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.7e-12 75.1 47 74.5
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 1.7e-12 75.1 47 74.5
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 2.3e-12 74.7 47 76.6
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 2.3e-12 74.7 47 68.1
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.3e-12 74.7 47 76.6
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 3.0e-12 74.3 46 67.4
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 3.9e-12 73.9 46 71.7
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 3.9e-12 73.9 46 71.7
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.9e-12 73.9 46 71.7
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 5.1e-12 73.6 46 71.7
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 6.6e-12 73.2 46 69.6
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 1.1e-11 72.4 46 69.6
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 1.5e-11 72.0 47 68.1
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.5e-11 72.0 44 77.3
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.9e-11 71.6 44 72.7
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 1.9e-11 71.6 46 65.2
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.9e-11 71.6 38 76.3
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 2.5e-11 71.2 47 70.2
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 3.3e-11 70.9 47 70.2
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 3.3e-11 70.9 44 72.7
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 4.3e-11 70.5 47 63.8
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 7.3e-11 69.7 46 65.2
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 7.3e-11 69.7 46 63.0
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.3e-10 68.9 46 67.4
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 1.6e-10 68.6 46 65.2
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 2.1e-10 68.2 44 61.4
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 2.1e-10 68.2 46 65.2
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 2.1e-10 68.2 45 64.4
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 2.1e-10 68.2 46 65.2
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 2.8e-10 67.8 46 65.2
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 3.6e-10 67.4 47 59.6
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 4.8e-10 67.0 30 93.3
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 6.2e-10 66.6 44 68.2
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 8.1e-10 66.2 46 65.2
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 1.1e-09 65.9 43 67.4
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 1.1e-09 65.9 46 65.2
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 1.4e-09 65.5 46 67.4
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 1.4e-09 65.5 45 64.4
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.8e-09 65.1 46 63.0
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 1.8e-09 65.1 46 65.2
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 1.8e-09 65.1 47 66.0
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 2.4e-09 64.7 45 64.4
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 2.4e-09 64.7 43 69.8
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 3.1e-09 64.3 46 63.0
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 4.0e-09 63.9 46 63.0
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 4.0e-09 63.9 44 65.9
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 4.0e-09 63.9 44 65.9
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 4.0e-09 63.9 46 63.0
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 5.3e-09 63.5 43 62.8
Actinidia09310 Actinidia chinensis HOM05D003612 ORTHO05D004323 6.9e-09 63.2 42 66.7
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 6.9e-09 63.2 39 74.4
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 6.9e-09 63.2 46 65.2
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 1.2e-08 62.4 46 63.0
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 1.5e-08 62.0 43 65.1
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 1.5e-08 62.0 44 56.8
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 2.0e-08 61.6 47 61.7
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.0e-08 61.6 31 80.6
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 2.0e-08 61.6 46 58.7
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 2.0e-08 61.6 46 58.7
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 2.6e-08 61.2 44 56.8
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 3.4e-08 60.8 46 60.9
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 3.4e-08 60.8 43 60.5
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 3.4e-08 60.8 44 61.4
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 3.4e-08 60.8 46 58.7
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 4.4e-08 60.5 46 60.9
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 7.6e-08 59.7 47 61.7
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 9.9e-08 59.3 47 55.3
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 2.2e-07 58.2 44 63.6
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 3.8e-07 57.4 33 72.7
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 6.4e-07 56.6 44 54.5
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 6.4e-07 56.6 45 55.6
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.4e-07 56.6 45 55.6
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 8.4e-07 56.2 46 60.9
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 1.1e-06 55.8 46 52.2
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 1.4e-06 55.5 43 53.5
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.9e-06 55.1 47 48.9


User provided reference genes

Program Settings