Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 3437.1 1783 100.0
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2695.6 1851 77.7
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2615.1 1847 75.7
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2548.1 1861 73.9
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2542.3 1822 74.2
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2538.8 1896 72.7
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2535.8 1855 73.6
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2522.3 1861 73.2
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2520.0 1861 73.4
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2516.5 1874 73.2
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2515.7 1858 73.1
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2510.3 1821 73.0
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2503.8 1856 72.9
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2501.9 1856 73.1
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2481.8 1839 72.9
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2478.7 1864 72.0
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2476.4 1868 70.5
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2473.4 1915 70.5
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2473.0 1819 72.1
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2466.8 1837 72.9
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2452.9 1859 71.8
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2451.0 1861 71.5
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2449.9 1837 71.6
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2442.9 1857 71.4
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2441.8 1816 71.5
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2440.2 1862 71.4
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2438.7 1854 71.0
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2432.1 1853 71.1
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2431.0 1845 71.3
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2430.2 1844 71.4
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2423.3 1789 72.8
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2421.4 1855 71.2
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2415.6 1863 70.9
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2415.2 1839 71.6
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2414.8 1866 70.9
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2412.9 1846 70.0
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2412.1 1839 71.6
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2409.4 1891 69.6
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2405.6 1866 71.0
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2398.2 1837 69.8
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2393.2 1851 69.5
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2393.2 1861 70.3
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2389.4 1845 69.4
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2387.8 1852 69.1
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2383.6 1852 69.2
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2379.0 1831 70.9
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2371.7 1846 69.1
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2368.6 1797 70.8
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2365.1 1923 68.3
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2359.3 1856 68.9
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2354.3 1823 70.0
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2353.2 1857 68.7
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2345.5 1851 69.4
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2343.5 1847 67.9
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2337.0 1838 68.8
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2319.7 1851 67.9
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2318.1 1828 69.0
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2315.4 1719 71.3
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2313.9 1824 68.8
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2312.7 1863 68.7
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2306.9 1845 67.5
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2306.9 1845 67.5
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2300.0 1856 67.5
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2293.8 1846 67.2
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2291.5 1837 66.8
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2291.5 1861 67.3
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2291.2 1835 67.8
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2286.5 1818 68.5
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2280.4 1791 69.9
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2277.3 1806 68.4
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2269.6 1825 67.6
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2266.9 1850 67.4
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2258.4 1836 67.0
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2254.2 1842 67.3
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2234.1 1826 66.6
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2211.8 1827 66.0
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 2173.7 1789 67.5
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 2154.4 1747 67.0
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2125.9 1813 65.1
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2124.7 1822 64.7
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2123.2 1828 64.1
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2104.7 1826 63.9
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2100.9 1827 63.4
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2091.2 1829 63.2
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 2075.4 1821 62.9
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2064.3 1842 62.4
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2062.7 1832 62.6
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 2003.8 1804 62.0
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 2003.8 1804 62.0
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 2002.3 1800 61.8
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1988.4 1821 61.0
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1987.6 1811 61.8
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1974.1 1881 59.2
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1927.5 1847 58.6
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1815.0 1836 55.3
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1791.9 1826 55.0
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1791.5 1775 57.8
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1774.2 1481 66.4
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1709.5 1230 73.9
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1703.3 1375 67.6
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1670.6 1686 56.0
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1590.1 1348 64.1
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1589.3 1279 66.6
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1567.7 1346 63.6
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1553.9 1560 59.4
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1532.3 1373 63.1
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1485.3 1760 50.5
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1390.6 1206 62.8
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1340.1 1992 43.4
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1289.2 1185 63.6
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1273.1 982 69.7
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1255.7 1370 54.7
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1242.6 1810 43.4
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1192.6 1956 40.1
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1174.1 1912 39.9
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1169.1 1996 39.0
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1135.2 1119 58.2
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 1.1e-299 1034.2 890 64.3
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 1.1e-286 991.1 1334 47.0
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 1.1e-243 848.2 1467 39.2
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 1.0e-220 771.9 652 61.7
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 7.0e-217 759.2 476 81.7
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 5.4e-209 733.0 521 74.7
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 3.2e-193 680.6 463 74.3
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 9.6e-190 669.1 628 58.6
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 2.2e-178 631.3 483 72.9
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 9.0e-172 609.4 381 82.9
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 6.4e-170 603.2 604 55.8
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 1.9e-169 601.7 337 91.4
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 4.6e-160 570.5 360 78.1
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 3.0e-159 567.8 521 61.0
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 3.0e-159 567.8 361 76.7
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 1.9e-158 565.1 422 66.4
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 2.5e-142 511.5 475 62.3
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 2.0e-139 501.9 381 72.2
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 3.8e-130 471.1 323 72.4
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 7.0e-116 423.7 267 87.3
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 8.3e-109 400.2 260 80.0
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 1.6e-104 386.0 423 54.1
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 1.4e-100 372.9 431 55.0
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 2.1e-83 315.8 291 66.0
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 2.1e-83 315.8 290 66.2
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 2.5e-81 308.9 299 63.5
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 1.1e-49 203.8 123 83.7
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 1.0e-45 190.7 153 64.7
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 1.2e-22 114.0 70 84.3
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 1.2e-22 114.0 118 52.5
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 7.7e-22 111.3 71 81.7
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 1.2e-19 104.0 70 75.7
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.2e-14 87.4 66 66.7
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 5.9e-14 85.1 559 20.9
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 1.3e-13 84.0 104 48.1
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.7e-13 83.6 70 58.6
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 2.9e-13 82.8 105 46.7
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 8.5e-13 81.3 204 27.9
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.5e-12 80.5 39 84.6
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.5e-12 79.7 34 97.1
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.5e-12 79.7 34 97.1
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.5e-12 79.7 34 97.1
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.5e-12 79.7 34 97.1
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 2.5e-12 79.7 34 97.1
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 3.6e-11 75.9 91 52.7
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 1.1e-07 64.3 179 27.9
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 1.1e-07 64.3 37 83.8
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 1.4e-07 63.9 181 31.5


User provided reference genes

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