Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 2.5e-127 458.8 223 100.0
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 5.2e-53 211.8 210 54.8
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 9.8e-52 207.6 200 57.5
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 1.4e-50 203.8 200 55.5
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 1.4e-50 203.8 198 56.6
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 3.2e-50 202.6 201 56.2
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 4.1e-50 202.2 201 55.2
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 4.1e-50 202.2 201 55.2
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 4.1e-50 202.2 201 55.2
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 7.1e-50 201.4 201 54.2
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 9.2e-50 201.1 202 53.5
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 1.6e-49 200.3 201 54.7
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 2.7e-49 199.5 215 52.1
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.5e-49 199.1 211 51.7
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 4.6e-49 198.7 201 54.7
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 1.3e-48 197.2 201 52.7
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 1.3e-48 197.2 200 54.0
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 1.3e-48 197.2 200 53.0
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 1.3e-48 197.2 209 50.7
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 1.7e-48 196.8 201 54.7
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 3.9e-48 195.7 199 54.3
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 6.6e-48 194.9 202 55.4
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 8.6e-48 194.5 199 54.3
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 1.5e-47 193.7 201 51.7
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 1.5e-47 193.7 201 52.7
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 2.5e-47 193.0 201 51.7
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 3.3e-47 192.6 201 53.2
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.3e-47 192.6 201 51.2
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 5.6e-47 191.8 203 51.2
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 7.3e-47 191.4 192 55.7
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 7.3e-47 191.4 206 51.0
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 7.3e-47 191.4 199 53.3
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 1.2e-46 190.7 201 54.2
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 1.6e-46 190.3 201 53.2
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 2.1e-46 189.9 199 53.3
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 2.8e-46 189.5 201 52.2
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 3.6e-46 189.1 199 52.8
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 4.7e-46 188.7 201 50.2
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 4.7e-46 188.7 197 53.3
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 4.7e-46 188.7 201 52.7
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 6.2e-46 188.3 205 50.7
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 6.2e-46 188.3 200 52.0
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 8.1e-46 188.0 201 53.2
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 8.1e-46 188.0 201 50.7
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 8.1e-46 188.0 197 52.8
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 8.1e-46 188.0 201 53.7
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 1.4e-45 187.2 190 55.3
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 1.4e-45 187.2 200 50.5
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 2.3e-45 186.4 196 51.0
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 5.2e-45 185.3 198 49.5
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 1.5e-44 183.7 197 51.8
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 2.0e-44 183.3 200 50.0
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 3.4e-44 182.6 202 50.0
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.4e-44 182.6 202 49.5
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 3.4e-44 182.6 220 48.2
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 5.8e-44 181.8 201 50.7
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 5.8e-44 181.8 201 50.2
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.7e-43 180.3 201 50.7
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 1.7e-43 180.3 198 50.5
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 3.8e-43 179.1 207 49.3
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 3.8e-43 179.1 201 49.8
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 8.4e-43 177.9 202 49.0
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 1.9e-42 176.8 205 49.3
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 1.9e-42 176.8 196 48.5
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 3.2e-42 176.0 192 50.0
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 1.2e-41 174.1 199 50.3
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 2.1e-41 173.3 200 49.0
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.1e-41 173.3 200 49.0
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 6.0e-41 171.8 199 49.7
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.0e-41 171.8 200 49.0
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 1.0e-40 171.0 208 46.6
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 3.0e-40 169.5 204 48.0
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 3.9e-40 169.1 222 47.7
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 1.1e-39 167.5 200 48.5
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 1.9e-39 166.8 200 47.0
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 2.5e-39 166.4 199 49.2
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 2.5e-39 166.4 89 88.8
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 4.3e-39 165.6 200 47.0
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 9.6e-39 164.5 200 47.0
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 1.2e-38 164.1 205 46.8
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 2.1e-38 163.3 90 83.3
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 2.8e-38 162.9 197 47.2
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 3.6e-38 162.5 231 44.2
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 4.7e-38 162.2 201 46.8
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 4.7e-38 162.2 90 85.6
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 1.4e-37 160.6 90 85.6
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 1.8e-37 160.2 199 47.7
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 2.4e-37 159.8 201 45.8
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 4.0e-37 159.1 200 45.5
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 4.0e-37 159.1 200 45.5
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.9e-37 158.3 208 45.2
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 8.9e-37 157.9 192 46.4
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 2.0e-36 156.8 91 82.4
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 2.0e-36 156.8 200 45.0
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 2.0e-36 156.8 98 74.5
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 2.0e-36 156.8 200 45.5
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 5.8e-36 155.2 200 44.5
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 7.6e-36 154.8 200 45.0
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 7.6e-36 154.8 200 46.0
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 9.9e-36 154.5 91 80.2
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 3.8e-35 152.5 201 44.8
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 4.9e-35 152.1 219 41.6
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.9e-34 150.2 195 45.1
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 2.4e-34 149.8 207 44.9
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 2.4e-34 149.8 201 45.8
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 3.2e-34 149.4 205 45.4
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 4.2e-34 149.1 201 42.3
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 1.0e-32 144.4 212 40.6
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 1.3e-32 144.1 207 44.4
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 5.1e-32 142.1 203 39.9
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 1.1e-31 141.0 212 40.1
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.1e-31 141.0 200 39.5
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 1.5e-31 140.6 200 40.5
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.3e-31 139.4 204 42.2
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 4.3e-31 139.0 101 67.3
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 7.3e-31 138.3 92 73.9
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 1.3e-30 137.5 206 38.8
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 2.8e-30 136.3 112 64.3
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 8.1e-30 134.8 202 43.1
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 3.1e-29 132.9 207 38.6
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 5.3e-29 132.1 205 41.0
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 2.6e-28 129.8 158 46.2
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 2.6e-28 129.8 105 66.7
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 3.4e-28 129.4 109 62.4
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.9e-27 126.3 211 38.9
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.9e-27 126.3 221 37.1
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 8.4e-27 124.8 93 64.5
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 1.4e-26 124.0 211 38.4
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 1.4e-26 124.0 92 65.2
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 2.4e-26 123.2 202 40.6
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 3.2e-26 122.9 158 45.6
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 3.2e-26 122.9 197 37.1
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 4.2e-26 122.5 158 45.6
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 7.1e-26 121.7 209 38.3
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.1e-25 120.2 219 35.2
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.7e-25 119.8 209 37.8
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 7.9e-25 118.2 154 44.2
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 7.9e-25 118.2 203 37.9
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 1.1e-23 114.4 154 42.9
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 1.9e-23 113.6 98 57.1
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.4e-21 106.7 155 40.6
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 3.8e-19 99.4 142 40.8
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.4e-18 96.7 214 32.2
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.7e-17 93.2 112 45.5
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.0e-17 92.0 206 34.5
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 4.3e-15 85.9 156 35.3
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 8.1e-14 81.6 63 55.6
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 1.4e-13 80.9 149 32.2
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 4.0e-13 79.3 63 52.4
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.0e-13 79.3 63 52.4
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 6.9e-13 78.6 97 44.3
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 6.9e-13 78.6 46 71.7
Lsat_1_v5_gn_9_112501 Lactuca sativa HOM05D003950 ORTHO05D004697 9.0e-13 78.2 60 66.7
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.5e-12 77.4 112 36.6
arahy.Tifrunner.gnm1.ann1.1EL4AZ Arachis hypogaea HOM05D003175 ORTHO05D021464 4.9e-11 72.4 39 84.6
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.4e-10 70.9 115 42.6
Manes.08G154400 Manihot esculenta HOM05D003950 ORTHO05D004697 4.2e-10 69.3 60 58.3
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 7.1e-10 68.6 59 55.9
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 1.6e-09 67.4 50 62.0
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 2.7e-09 66.6 49 59.2
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 4.6e-09 65.9 206 28.2
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 1.3e-08 64.3 49 57.1
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.5e-07 60.1 60 50.0
CBR_g23172 Chara braunii HOM05D003950 ORTHO05D004697 8.2e-06 55.1 114 35.1


User provided reference genes

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