Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 2.1e-146 522.3 254 100.0
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 8.5e-100 367.5 233 77.3
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 1.9e-99 366.3 235 77.4
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 7.2e-99 364.4 233 76.0
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 9.4e-99 364.0 233 76.4
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 5.1e-97 358.2 242 71.9
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 1.8e-94 349.7 233 74.7
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 5.0e-92 341.7 239 72.0
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 3.2e-91 339.0 255 67.1
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 1.0e-89 334.0 226 73.5
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 2.2e-87 326.2 235 68.5
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 2.2e-87 326.2 255 63.9
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 1.0e-84 317.4 207 75.8
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 1.3e-84 317.0 200 76.0
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 2.9e-84 315.8 202 74.8
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 2.9e-84 315.8 239 66.1
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 9.4e-83 310.8 236 64.8
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 1.4e-81 307.0 247 59.1
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 1.8e-81 306.6 234 63.7
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 1.1e-80 303.9 241 62.7
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 3.3e-80 302.4 235 63.4
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 5.7e-80 301.6 233 62.7
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 8.2e-79 297.7 244 59.8
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 1.4e-78 297.0 233 61.8
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 5.3e-78 295.0 237 62.4
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 1.2e-77 293.9 262 58.0
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 1.6e-77 293.5 240 60.4
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 2.7e-77 292.7 237 62.0
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 3.8e-76 288.9 233 60.9
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 6.5e-76 288.1 233 60.9
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 8.5e-76 287.7 246 60.6
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 1.9e-75 286.6 251 58.2
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 1.9e-75 286.6 237 60.8
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 2.5e-75 286.2 246 60.2
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 3.2e-75 285.8 234 62.4
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 3.2e-75 285.8 233 60.5
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 5.5e-75 285.0 241 58.5
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 5.5e-75 285.0 262 58.0
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 5.5e-75 285.0 237 60.3
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 9.4e-75 284.3 237 59.9
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 1.6e-74 283.5 237 59.9
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 2.1e-74 283.1 250 57.6
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 2.1e-74 283.1 250 57.6
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 3.6e-74 282.3 251 56.6
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 8.0e-74 281.2 252 54.8
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 1.0e-73 280.8 245 58.4
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 1.0e-73 280.8 233 57.9
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 1.8e-73 280.0 268 54.5
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 2.3e-73 279.6 237 59.9
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 3.0e-73 279.3 233 60.1
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 2.0e-72 276.6 234 60.3
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 5.7e-72 275.0 230 60.4
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 9.8e-72 274.2 234 58.5
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 1.7e-71 273.5 235 59.1
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 6.3e-71 271.6 233 58.8
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 8.3e-71 271.2 230 59.6
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 1.1e-70 270.8 233 57.9
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 1.8e-70 270.0 234 58.1
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 1.8e-70 270.0 233 57.1
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 2.7e-69 266.2 233 57.5
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 1.3e-68 263.8 235 57.0
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 1.7e-68 263.5 256 54.7
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 1.1e-67 260.8 235 56.2
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 3.2e-67 259.2 229 57.2
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 5.5e-67 258.5 270 54.1
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 7.2e-67 258.1 236 53.0
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 6.8e-65 251.5 228 57.0
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 6.8e-65 251.5 244 52.9
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 8.8e-65 251.1 234 55.1
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 2.6e-64 249.6 235 56.6
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.3e-63 247.3 236 53.4
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 1.7e-63 246.9 236 53.8
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 3.7e-63 245.7 235 53.6
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 1.1e-62 244.2 234 55.1
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 7.0e-62 241.5 236 52.5
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 4.5e-61 238.8 239 50.6
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.7e-60 236.9 241 48.5
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 1.7e-60 236.9 276 46.4
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 1.1e-59 234.2 234 52.1
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.1e-59 234.2 241 48.5
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 1.2e-58 230.7 234 49.1
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 6.1e-58 228.4 234 51.7
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 2.3e-57 226.5 248 48.4
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 3.7e-55 219.2 216 50.0
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 4.9e-55 218.8 232 50.0
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 5.4e-54 215.3 216 53.7
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 9.2e-54 214.5 217 55.3
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 9.2e-54 214.5 233 47.6
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.6e-53 213.8 247 49.4
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 2.0e-53 213.4 176 60.8
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 8.6e-52 208.0 237 49.4
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 3.6e-50 202.6 138 64.5
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 4.7e-50 202.2 245 44.1
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 8.0e-50 201.4 182 56.6
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 4.0e-49 199.1 197 53.8
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 1.5e-48 197.2 236 47.5
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 1.1e-46 191.0 260 39.6
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 7.0e-46 188.3 232 44.8
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 6.2e-42 175.3 240 37.9
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 8.1e-42 174.9 146 58.2
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 7.1e-38 161.8 181 50.8
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 3.5e-37 159.5 173 50.3
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 6.2e-34 148.7 207 44.4
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 7.8e-29 131.7 242 34.7
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 7.8e-29 131.7 242 34.7
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 1.1e-19 101.3 78 62.8
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 6.0e-13 79.0 99 42.4
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 8.1e-10 68.6 144 30.6
Psat7g244360 Pisum sativum HOM05D000821 ORTHO05D000931 1.8e-09 67.4 54 64.8


User provided reference genes

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