Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr18g0060571 Lupinus albus HOM05D000343 ORTHO05D009884 2.2e-85 318.9 161 100.0
Glyma.15G053500 Glycine max HOM05D000343 ORTHO05D009884 2.5e-20 102.8 104 54.8
Medtr7g116990 Medicago truncatula HOM05D000343 ORTHO05D009884 2.7e-19 99.4 137 46.7
Ca_00135_v3 Cicer arietinum L. HOM05D000343 ORTHO05D009884 4.7e-19 98.6 135 50.4
TPR.G25247 Trifolium pratense HOM05D000343 ORTHO05D009884 1.4e-18 97.1 104 56.7
Lj6g0025417 Lotus japonicus HOM05D000343 ORTHO05D009884 1.1e-17 94.0 88 56.8
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.1e-17 94.0 93 58.1
Psat1g216600 Pisum sativum HOM05D000343 ORTHO05D009884 2.6e-17 92.8 158 43.7
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 5.7e-17 91.7 88 59.1
arahy.Tifrunner.gnm1.ann1.3SZ8AD Arachis hypogaea HOM05D000343 ORTHO05D009884 1.3e-16 90.5 110 49.1
Glyma.08G179000 Glycine max HOM05D000343 ORTHO05D009884 1.3e-16 90.5 93 54.8
arahy.Tifrunner.gnm1.ann1.HQ4SC1 Arachis hypogaea HOM05D000343 ORTHO05D009884 2.8e-16 89.4 110 49.1
THA.LOC104804410 Tarenaya hassleriana HOM05D000343 ORTHO05D002777 1.4e-15 87.0 87 57.5
Oeu007963.1 Olea europaea HOM05D000343 ORTHO05D009884 6.9e-15 84.7 83 55.4
PSO210G0964 Papaver somniferum HOM05D000343 ORTHO05D009884 9.1e-15 84.3 73 58.9
ECA236G2887 Erigeron canadensis HOM05D000343 ORTHO05D009884 2.0e-14 83.2 143 44.1
Nn1g05348 Nelumbo nucifera HOM05D000343 ORTHO05D009884 2.0e-14 83.2 72 61.1
Gorai.012G142100 Gossypium raimondii HOM05D000343 ORTHO05D009884 2.6e-14 82.8 80 57.5
Cpa.g.sc42.57 Carica papaya HOM05D000343 ORTHO05D009884 3.4e-14 82.4 88 55.7
Potri.001G205400 Populus trichocarpa HOM05D000343 ORTHO05D002777 3.4e-14 82.4 80 56.2
Sc22g0003160 Simmondsia chinensis HOM05D000343 ORTHO05D002777 3.4e-14 82.4 80 56.2
COL.COLO4_24941 Corchorus olitorius HOM05D000343 ORTHO05D009884 4.5e-14 82.0 86 54.7
Gohir.A04G113600 Gossypium hirsutum HOM05D000343 ORTHO05D009884 5.9e-14 81.6 80 57.5
SalBow5G0636 Salvia bowleyana HOM05D000343 ORTHO05D009884 5.9e-14 81.6 72 61.1
SalBow5G2302 Salvia bowleyana HOM05D000343 ORTHO05D009884 5.9e-14 81.6 72 61.1
CiPaw.05G035500 Carya illinoinensis HOM05D000343 ORTHO05D009884 7.7e-14 81.3 79 55.7
Nitab4.5_0002576g0010 Nicotiana tabacum HOM05D000343 ORTHO05D002777 1.0e-13 80.9 80 55.0
PGR042G3206 Punica granatum HOM05D000343 ORTHO05D002777 1.0e-13 80.9 73 58.9
QL11p020880 Quercus lobata HOM05D000343 ORTHO05D009884 1.0e-13 80.9 72 59.7
CiPaw.06G153500 Carya illinoinensis HOM05D000343 ORTHO05D002777 1.3e-13 80.5 80 53.8
Sopen01g047700 Solanum pennellii HOM05D000343 ORTHO05D009884 1.3e-13 80.5 83 55.4
PGSC0003DMG400012559 Solanum tuberosum HOM05D000343 ORTHO05D009884 1.3e-13 80.5 83 55.4
Migut.B00610 Erythranthe guttata HOM05D000343 ORTHO05D002777 1.7e-13 80.1 85 54.1
Hma1.2p1_0704F.1_g206650 Hydrangea macrophylla HOM05D000343 ORTHO05D002777 1.7e-13 80.1 90 53.3
Oeu000247.4 Olea europaea HOM05D000343 ORTHO05D002777 1.7e-13 80.1 82 56.1
FvH4_2g11930 Fragaria vesca HOM05D000343 ORTHO05D002777 2.2e-13 79.7 101 47.5
FAN15G3294 Fragaria x ananassa HOM05D000343 ORTHO05D002777 2.2e-13 79.7 101 47.5
FAN24G2206 Fragaria x ananassa HOM05D000343 ORTHO05D002777 2.2e-13 79.7 101 47.5
Lalb_Chr04g0256521 Lupinus albus HOM05D000343 ORTHO05D009884 2.2e-13 79.7 84 52.4
Prupe.8G060400 Prunus persica HOM05D000343 ORTHO05D002777 2.2e-13 79.7 102 47.1
Hund00062 Selenicereus undatus HOM05D000343 ORTHO05D002777 2.2e-13 79.7 80 53.8
Solyc01g105160.4 Solanum lycopersicum HOM05D000343 ORTHO05D002777 2.2e-13 79.7 81 56.8
PSO447G0128 Papaver somniferum HOM05D000343 ORTHO05D009884 2.9e-13 79.3 73 56.2
Sed0024706 Sechium edule HOM05D000343 ORTHO05D009884 2.9e-13 79.3 91 50.5
Cfa005601 Carpinus fangiana HOM05D000343 ORTHO05D002777 3.8e-13 79.0 80 53.8
Cc02_g21540 Coffea canephora HOM05D000343 ORTHO05D009884 3.8e-13 79.0 95 49.5
FAN20G2112 Fragaria x ananassa HOM05D000343 ORTHO05D002777 3.8e-13 79.0 94 50.0
Sed0012395 Sechium edule HOM05D000343 ORTHO05D002777 3.8e-13 79.0 92 48.9
TAR628G1020 Trochodendron aralioides HOM05D000343 ORTHO05D002777 3.8e-13 79.0 88 52.3
arahy.Tifrunner.gnm1.ann1.8T0CRQ Arachis hypogaea HOM05D000343 ORTHO05D002777 5.0e-13 78.6 80 52.5
MELO3C018643.2 Cucumis melo HOM05D000343 ORTHO05D009884 5.0e-13 78.6 72 58.3
arahy.Tifrunner.gnm1.ann1.KT5IG2 Arachis hypogaea HOM05D000343 ORTHO05D002777 6.5e-13 78.2 80 52.5
MELO3C019011.2 Cucumis melo HOM05D000343 ORTHO05D002777 6.5e-13 78.2 92 47.8
Glyma.05G117300 Glycine max HOM05D000343 ORTHO05D009884 6.5e-13 78.2 73 56.2
Gohir.A03G173900 Gossypium hirsutum HOM05D000343 ORTHO05D002777 6.5e-13 78.2 80 53.8
Gohir.D04G154900 Gossypium hirsutum HOM05D000343 ORTHO05D009884 6.5e-13 78.2 72 59.7
Thecc.02G138700 Theobroma cacao HOM05D000343 ORTHO05D002777 6.5e-13 78.2 80 53.8
CsaV3_4G009440 Cucumis sativus L. HOM05D000343 ORTHO05D002777 8.5e-13 77.8 80 51.2
Glyma.08G072400 Glycine max HOM05D000343 ORTHO05D002777 8.5e-13 77.8 73 56.2
MD10G1051800 Malus domestica HOM05D000343 ORTHO05D009884 8.5e-13 77.8 79 54.4
MSTRG.16584 Avicennia marina HOM05D000343 ORTHO05D009884 1.1e-12 77.4 78 53.8
CDE05G0554 Ceratophyllum demersum HOM05D000391 ORTHO05D000293 1.1e-12 77.4 106 45.3
unitig_749.g14153 Utricularia gibba HOM05D000343 ORTHO05D009884 1.1e-12 77.4 93 50.5
GSVIVG01038744001 Vitis vinifera HOM05D000343 ORTHO05D009884 1.1e-12 77.4 80 55.0
CAN.G523.72 Capsicum annuum HOM05D000343 ORTHO05D002777 1.4e-12 77.0 72 59.7
ClCG09G015420 Citrullus lanatus HOM05D000343 ORTHO05D009884 1.4e-12 77.0 72 58.3
ClCG10G009250 Citrullus lanatus HOM05D000343 ORTHO05D002777 1.4e-12 77.0 92 47.8
Ciclev10030175m.g Citrus clementina HOM05D000343 ORTHO05D009884 1.4e-12 77.0 80 53.8
Duzib248G1573 Durio zibethinus HOM05D000343 ORTHO05D009884 1.9e-12 76.6 72 58.3
Manes.06G012600 Manihot esculenta HOM05D000343 ORTHO05D002777 1.9e-12 76.6 97 48.5
CsaV3_7G006490 Cucumis sativus L. HOM05D000343 ORTHO05D009884 2.5e-12 76.3 72 58.3
Gohir.D02G197000 Gossypium hirsutum HOM05D000343 ORTHO05D009884 2.5e-12 76.3 72 58.3
Gorai.005G220100 Gossypium raimondii HOM05D000343 ORTHO05D009884 2.5e-12 76.3 72 58.3
HanXRQChr03g0066901 Helianthus annuus HOM05D000343 ORTHO05D002777 2.5e-12 76.3 94 47.9
Sabra03G0015100 Salix brachista HOM05D000343 ORTHO05D009884 2.5e-12 76.3 72 58.3
TWI59G0918 Tripterygium wilfordii HOM05D000343 ORTHO05D002777 2.5e-12 76.3 80 50.0
Actinidia23995 Actinidia chinensis HOM05D000343 ORTHO05D002777 3.2e-12 75.9 80 53.8
EL10Ac9g21477 Beta vulgaris HOM05D000343 ORTHO05D002777 3.2e-12 75.9 80 55.0
AUR62013126 Chenopodium quinoa HOM05D000343 ORTHO05D002777 3.2e-12 75.9 80 51.2
Duzib132G0085 Durio zibethinus HOM05D000343 ORTHO05D002777 3.2e-12 75.9 72 58.3
Nn5g30120 Nelumbo nucifera HOM05D000343 ORTHO05D002777 3.2e-12 75.9 80 52.5
Potri.003G024000 Populus trichocarpa HOM05D000343 ORTHO05D002777 3.2e-12 75.9 80 52.5
BraA08t33711Z Brassica rapa HOM05D000343 ORTHO05D009884 4.2e-12 75.5 98 49.0
Lalb_Chr10g0097841 Lupinus albus HOM05D000343 ORTHO05D002777 4.2e-12 75.5 73 56.2
Phvul.002G208800 Phaseolus vulgaris HOM05D000343 ORTHO05D002777 4.2e-12 75.5 73 54.8
VMungo0251G0418 Vigna mungo HOM05D000343 ORTHO05D009884 4.2e-12 75.5 73 54.8
A08p17580 Brassica napus HOM05D000343 ORTHO05D009884 5.5e-12 75.1 88 51.1
CSS0044959 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D002777 5.5e-12 75.1 72 55.6
Lsat_1_v5_gn_7_80921 Lactuca sativa HOM05D000343 ORTHO05D009884 5.5e-12 75.1 103 47.6
Lj4g0019087 Lotus japonicus HOM05D000343 ORTHO05D002777 5.5e-12 75.1 73 53.4
PSO781G0273 Papaver somniferum HOM05D000343 ORTHO05D002777 5.5e-12 75.1 72 56.9
Pp3c22_10860 Physcomitrium patens HOM05D000343 ORTHO05D002777 5.5e-12 75.1 76 55.3
Sp7g31260 Schrenkiella parvula HOM05D000343 ORTHO05D002777 5.5e-12 75.1 87 50.6
Atru.chr6.1136 Acer truncatum HOM05D000343 ORTHO05D002777 7.2e-12 74.7 80 52.5
ATR0118G027 Amborella trichopoda HOM05D000343 ORTHO05D002777 7.2e-12 74.7 80 55.0
AagrBONN_evm.TU.Sc2ySwM_117.4043 Anthoceros agrestis HOM05D000208 ORTHO05D000130 7.2e-12 74.7 86 53.5
BcaC01g00987 Brassica carinata HOM05D000343 ORTHO05D009884 7.2e-12 74.7 73 53.4
C03p86570 Brassica napus HOM05D000343 ORTHO05D009884 7.2e-12 74.7 73 53.4
BolC3t20951H Brassica oleracea HOM05D000343 ORTHO05D009884 7.2e-12 74.7 73 53.4
MD05G1044800 Malus domestica HOM05D000343 ORTHO05D009884 7.2e-12 74.7 79 51.9
RcHm_v2.0_Chr6g0271811 Rosa chinensis HOM05D000343 ORTHO05D009884 7.2e-12 74.7 72 54.2
AL7G18020 Arabidopsis lyrata HOM05D000343 ORTHO05D009884 9.4e-12 74.3 73 53.4
AT4G33520 Arabidopsis thaliana HOM05D000343 ORTHO05D002777 9.4e-12 74.3 73 53.4
BolC1t00495H Brassica oleracea HOM05D000343 ORTHO05D002777 9.4e-12 74.3 73 53.4
BraA01t00457Z Brassica rapa HOM05D000343 ORTHO05D002777 9.4e-12 74.3 73 53.4
CANSAT11G1697 Cannabis sativa HOM05D000343 ORTHO05D002777 9.4e-12 74.3 91 49.5
Carub.0007s0694 Capsella rubella HOM05D000343 ORTHO05D009884 9.4e-12 74.3 73 53.4
C01p05150 Brassica napus HOM05D000343 ORTHO05D002777 1.2e-11 73.9 73 53.4
CARHR241620 Cardamine hirsuta HOM05D000343 ORTHO05D009884 1.2e-11 73.9 73 53.4
MBI05_g19354_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D009884 1.2e-11 73.9 91 46.2
Medtr4g094232 Medicago truncatula HOM05D000343 ORTHO05D002777 1.2e-11 73.9 72 54.2
Os03g0388100 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D009884 1.2e-11 73.9 76 52.6
HPP92_002330 Vanilla planifolia HOM05D000343 ORTHO05D002777 1.2e-11 73.9 73 58.9
BcaB03g12795 Brassica carinata HOM05D000343 ORTHO05D009884 1.6e-11 73.6 73 53.4
BcaC09g52169 Brassica carinata HOM05D000343 ORTHO05D002777 1.6e-11 73.6 84 50.0
Lsat_1_v5_gn_9_117160 Lactuca sativa HOM05D000343 ORTHO05D002777 1.6e-11 73.6 93 49.5
vmacro01824 Vaccinium macrocarpon HOM05D000343 ORTHO05D002777 1.6e-11 73.6 72 55.6
Ca_18353_v3 Cicer arietinum L. HOM05D000343 ORTHO05D002777 2.1e-11 73.2 72 54.2
A01p04740 Brassica napus HOM05D000343 ORTHO05D002777 2.7e-11 72.8 73 52.1
Mapoly0071s0034 Marchantia polymorpha HOM05D000343 ORTHO05D002777 2.7e-11 72.8 76 53.9
SGA_v2.0_scaffold14G07121 Striga asiatica HOM05D000343 ORTHO05D002777 2.7e-11 72.8 78 53.8
Zm00001eb199150 Zea mays HOM05D000343 ORTHO05D002777 2.7e-11 72.8 82 53.7
AUR62010134 Chenopodium quinoa HOM05D000343 ORTHO05D002777 3.6e-11 72.4 77 51.9
Oeu036419.1 Olea europaea HOM05D000343 ORTHO05D009884 3.6e-11 72.4 72 51.4
TPR.G10457 Trifolium pratense HOM05D000343 ORTHO05D002777 3.6e-11 72.4 72 52.8
HPP92_019306 Vanilla planifolia HOM05D000343 ORTHO05D009884 3.6e-11 72.4 89 51.7
Aa31sc280G30 Aethionema arabicum HOM05D000343 ORTHO05D002777 4.7e-11 72.0 88 50.0
MBI02_g08720_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D002777 4.7e-11 72.0 80 51.2
Aqoxy6G00797 Aquilegia oxysepala HOM05D000343 ORTHO05D002777 6.1e-11 71.6 73 53.4
DCAR_001785 Daucus carota HOM05D000343 ORTHO05D009884 6.1e-11 71.6 79 50.6
PSO541G1663 Papaver somniferum HOM05D000343 ORTHO05D002777 6.1e-11 71.6 72 55.6
Actinidia00268 Actinidia chinensis HOM05D000343 ORTHO05D002777 8.0e-11 71.2 72 55.6
Ah.01g022360 Amaranthus hybridus HOM05D000343 ORTHO05D002777 8.0e-11 71.2 72 55.6
CDE12G0847 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 1.0e-10 70.9 72 58.3
Eucgr.G00769 Eucalyptus grandis HOM05D000343 ORTHO05D002777 1.0e-10 70.9 72 54.2
FAN27G2388 Fragaria x ananassa HOM05D000343 ORTHO05D002777 1.0e-10 70.9 75 50.7
SMO011G0027 Selaginella moellendorffii HOM05D000343 ORTHO05D002777 1.0e-10 70.9 80 51.2
CBR_g20392 Chara braunii HOM05D000343 ORTHO05D002777 1.8e-10 70.1 81 50.6
Hund06383 Selenicereus undatus HOM05D000343 ORTHO05D009884 3.0e-10 69.3 72 51.4
Zm00001eb392420 Zea mays HOM05D000343 ORTHO05D009884 3.0e-10 69.3 81 46.9
ECA240G1089 Erigeron canadensis HOM05D000343 ORTHO05D002777 3.9e-10 68.9 72 54.2
Os07g0623200 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D009884 3.9e-10 68.9 76 48.7
CDE10G0761 Ceratophyllum demersum HOM05D000343 ORTHO05D009884 5.2e-10 68.6 97 45.4
HanXRQChr13g0420711 Helianthus annuus HOM05D000343 ORTHO05D009884 5.2e-10 68.6 72 54.2
TAR376G1172 Trochodendron aralioides HOM05D000343 ORTHO05D009884 5.2e-10 68.6 72 52.8
Lj9A353G63 Lonicera japonica HOM05D000343 ORTHO05D002777 6.7e-10 68.2 94 43.6
Pp3c19_14990 Physcomitrium patens HOM05D000343 ORTHO05D009884 6.7e-10 68.2 81 49.4
Eucgr.L00482 Eucalyptus grandis HOM05D000343 ORTHO05D009884 8.8e-10 67.8 93 46.2
HanXRQChr11g0338131 Helianthus annuus HOM05D000343 ORTHO05D009884 1.1e-09 67.4 128 39.1
Zm00001eb327860 Zea mays HOM05D000343 ORTHO05D009884 1.1e-09 67.4 88 46.6
Pp3c18_10710 Physcomitrium patens HOM05D000343 ORTHO05D002777 1.5e-09 67.0 84 48.8
Rhsim11G0136600 Rhododendron simsii HOM05D000343 ORTHO05D002777 1.1e-07 60.8 98 40.8
BcaB08g36468 Brassica carinata HOM05D000343 ORTHO05D002777 3.1e-07 59.3 97 37.1
Eucgr.G00674 Eucalyptus grandis HOM05D000343 ORTHO05D009884 4.1e-07 58.9 46 63.0
Eucgr.L00219 Eucalyptus grandis HOM05D000343 ORTHO05D009884 9.1e-07 57.8 88 40.9
C09p54810 Brassica napus HOM05D000343 ORTHO05D002777 1.2e-06 57.4 96 37.5
BolC9t58341H Brassica oleracea HOM05D000343 ORTHO05D002777 1.2e-06 57.4 96 37.5
AL6G32890 Arabidopsis lyrata HOM05D000343 ORTHO05D002777 2.0e-06 56.6 101 36.6
A10p18790 Brassica napus HOM05D000343 ORTHO05D002777 3.5e-06 55.8 71 42.3
BraA10t43959Z Brassica rapa HOM05D000343 ORTHO05D002777 3.5e-06 55.8 71 42.3
AT5G21930 Arabidopsis thaliana HOM05D000343 ORTHO05D002777 4.5e-06 55.5 100 37.0
Cre10.g424775 Chlamydomonas reinhardtii HOM05D000343 ORTHO05D002777 4.5e-06 55.5 86 41.9
Ca_15832_v3 Cicer arietinum L. HOM05D000343 ORTHO05D002777 5.9e-06 55.1 67 44.8


User provided reference genes

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