Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 0.0e+00 1969.5 1123 100.0
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 1.8e-266 923.3 1220 53.8
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 2.4e-255 886.3 1308 51.1
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 1.8e-226 790.4 1247 50.6
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 1.2e-219 767.7 1224 49.3
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 2.0e-217 760.4 1410 43.7
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 2.3e-213 746.9 1404 44.5
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 1.8e-210 737.3 1129 48.1
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 1.5e-209 734.2 1383 43.6
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 8.1e-187 658.7 1137 42.8
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 5.1e-181 639.4 1103 45.6
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 1.6e-179 634.4 1104 45.0
Lalb_Chr09g0321101 Lupinus albus HOM05D003520 ORTHO05D003332 1.9e-167 594.3 1389 37.7
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 2.9e-160 570.5 1172 38.7
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 9.4e-151 538.9 1231 41.2
Phvul.002G155600 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 1.1e-135 488.8 1173 36.7
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 4.5e-76 290.8 934 30.6
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 3.1e-69 268.1 998 28.6
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 8.4e-67 260.0 869 30.1
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 3.9e-64 251.1 892 27.6
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 4.8e-62 244.2 1177 26.5
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 3.5e-57 228.0 1143 26.3
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.8e-56 225.7 1117 25.6
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 3.3e-55 221.5 1126 24.9
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 1.3e-54 219.5 1121 25.5
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.8e-54 218.4 1126 25.0
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.4e-53 216.1 1113 25.4
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 2.0e-52 212.2 1139 26.2
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.0e-51 209.9 959 26.0
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 3.9e-48 198.0 949 26.6
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.9e-47 195.7 1078 27.4
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 7.4e-47 193.7 1075 26.5
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 9.7e-47 193.4 1155 25.5
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 1.1e-45 189.9 910 26.0
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 2.4e-45 188.7 737 26.9
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 3.2e-42 178.3 1099 25.4
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 2.7e-41 175.3 485 33.8
Haze_08912 Corylus avellana HOM05D003520 ORTHO05D003332 1.1e-39 169.9 447 34.2
Haze_08915 Corylus avellana HOM05D003520 ORTHO05D003332 1.1e-39 169.9 447 34.2
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 7.4e-39 167.2 892 25.6
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 4.1e-37 161.4 842 29.6
Glyma.01G217800 Glycine max HOM05D003520 ORTHO05D003332 5.9e-36 157.5 232 47.0
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 9.4e-34 150.2 1025 23.8
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 3.3e-31 141.7 1020 24.3
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 7.4e-31 140.6 366 27.9
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 1.3e-30 139.8 961 23.8
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 1.7e-30 139.4 302 33.1
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 8.2e-30 137.1 1029 23.5
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 2.4e-29 135.6 964 26.0
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 5.3e-29 134.4 614 30.9
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.2e-28 133.3 462 29.9
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 6.5e-27 127.5 487 25.9
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 1.5e-26 126.3 215 32.1
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 4.2e-26 124.8 1097 22.7
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 4.7e-25 121.3 643 24.6
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 1.0e-24 120.2 339 28.9
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 1.4e-24 119.8 294 31.3
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 5.2e-24 117.9 285 29.8
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 5.2e-24 117.9 485 25.2
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 7.5e-23 114.0 338 28.1
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 1.3e-22 113.2 746 24.0
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 2.2e-22 112.5 227 31.3
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 3.7e-22 111.7 671 28.2
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 4.8e-22 111.3 286 29.7
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 1.1e-21 110.2 299 30.8
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 2.4e-21 109.0 229 31.4
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 9.1e-21 107.1 213 30.5
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 2.0e-20 105.9 251 29.9
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 4.5e-20 104.8 424 26.2
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 5.9e-20 104.4 214 31.8
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 1.0e-19 103.6 159 37.1
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 1.7e-19 102.8 530 24.2
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 2.9e-19 102.1 482 32.8
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 8.5e-19 100.5 406 31.3
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 1.9e-18 99.4 847 22.6
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 5.5e-18 97.8 290 34.8
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 7.2e-18 97.4 469 27.3
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 9.4e-18 97.1 658 22.8
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 9.4e-18 97.1 355 27.3
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.1e-17 95.9 276 29.0
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.7e-17 95.5 238 30.3
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 2.7e-17 95.5 140 44.3
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 3.6e-17 95.1 233 27.0
Glyma.11G025500 Glycine max HOM05D003520 ORTHO05D003332 4.7e-17 94.7 224 34.4
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 6.1e-17 94.4 503 24.1
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 1.0e-16 93.6 632 23.6
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 1.8e-16 92.8 291 26.1
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 1.8e-16 92.8 82 56.1
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 1.8e-16 92.8 611 23.7
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 1.8e-16 92.8 611 23.7
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.8e-16 92.8 245 28.6
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 5.2e-16 91.3 487 24.4
Os04g0266400 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 5.2e-16 91.3 270 28.9
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 8.8e-16 90.5 243 29.2
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 1.2e-15 90.1 523 25.6
Zm00001eb420370 Zea mays HOM05D003520 ORTHO05D003332 1.2e-15 90.1 342 24.3
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 1.5e-15 89.7 283 28.6
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 1.5e-15 89.7 263 40.3
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 2.0e-15 89.4 227 30.0
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 5.7e-15 87.8 303 26.4
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 9.8e-15 87.0 212 29.7
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 1.7e-14 86.3 946 22.1
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 2.8e-14 85.5 264 37.9
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 3.7e-14 85.1 234 26.9
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 3.7e-14 85.1 309 27.2
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 4.8e-14 84.7 66 57.6
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 4.8e-14 84.7 247 30.4
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 6.3e-14 84.3 212 28.8
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 8.3e-14 84.0 507 24.7
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 1.1e-13 83.6 263 38.0
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 1.1e-13 83.6 309 26.2
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.4e-13 83.2 126 37.3
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 1.2e-12 80.1 209 28.7
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 1.6e-12 79.7 104 40.4
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 1.6e-12 79.7 259 26.3
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 1.6e-12 79.7 135 37.8
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 3.5e-12 78.6 477 22.4
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 4.5e-12 78.2 328 27.1
Rhsim07G0193800 Rhododendron simsii HOM05D003520 ORTHO05D003332 4.5e-12 78.2 113 44.2
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 5.9e-12 77.8 256 26.6
CDE06G0068 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 7.7e-12 77.4 74 47.3
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 7.7e-12 77.4 267 25.8
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 1.3e-11 76.6 258 26.4
Duzib205G1307 Durio zibethinus HOM05D003520 ORTHO05D003332 1.7e-11 76.3 84 39.3
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 3.8e-11 75.1 212 28.8
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 3.8e-11 75.1 335 25.7
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 5.0e-11 74.7 144 34.7
Zm00001eb430800 Zea mays HOM05D023145 ORTHO05D003332 5.0e-11 74.7 218 28.0
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 6.6e-11 74.3 200 28.0
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 6.6e-11 74.3 96 41.7
Lsat_1_v5_gn_0_29760 Lactuca sativa HOM05D003520 ORTHO05D003332 6.6e-11 74.3 88 45.5
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 6.6e-11 74.3 71 47.9
Os04g0273900 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 6.6e-11 74.3 289 27.7
Zm00001eb171140 Zea mays HOM05D023145 ORTHO05D003332 6.6e-11 74.3 84 50.0
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 8.6e-11 73.9 385 25.5
Zm00001eb048990 Zea mays HOM05D003520 ORTHO05D003332 8.6e-11 73.9 217 26.7
CiPaw.04G065400 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.5e-10 73.2 65 56.9
PGSC0003DMG400003059 Solanum tuberosum HOM05D003520 ORTHO05D003332 1.9e-10 72.8 148 31.8
Carub.0008s1232 Capsella rubella HOM05D012366 ORTHO05D003332 2.5e-10 72.4 272 26.5
MBI17_g21053_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 2.5e-10 72.4 235 43.0
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 4.2e-10 71.6 153 32.0
SGA_v2.0_scaffold2G01065 Striga asiatica HOM05D003520 ORTHO05D003332 5.5e-10 71.2 110 43.6
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 1.2e-09 70.1 305 26.6
Os04g0613800 Oryza sativa ssp. japonica HOM05D023145 ORTHO05D003332 2.8e-09 68.9 301 27.2
Dinv28454 Davidia involucrata HOM05D003520 ORTHO05D003332 3.6e-09 68.6 77 45.5
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 6.1e-09 67.8 216 28.7
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 8.0e-09 67.4 448 25.0
AUR62017242 Chenopodium quinoa HOM05D003520 ORTHO05D003332 1.0e-08 67.0 326 23.0
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 1.8e-08 66.2 188 31.4
Peaxi162Scf00915g00037 Petunia axillaris HOM05D012625 ORTHO05D003332 1.8e-08 66.2 170 26.5
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 1.8e-08 66.2 72 43.1
GSVIVG01019811001 Vitis vinifera HOM05D000016 ORTHO05D000109 1.8e-08 66.2 176 35.2
Ah.02g116500 Amaranthus hybridus HOM05D003520 ORTHO05D003332 5.2e-08 64.7 85 42.4
Actinidia32870 Actinidia chinensis HOM05D003520 ORTHO05D003332 6.8e-08 64.3 65 46.2
Rhsim03G0179300 Rhododendron simsii HOM05D003520 ORTHO05D003332 6.8e-08 64.3 55 49.1
MELO3C005647.2 Cucumis melo HOM05D003520 ORTHO05D003332 8.9e-08 63.9 165 32.1
CARHR265160 Cardamine hirsuta HOM05D012366 ORTHO05D003332 1.2e-07 63.5 73 39.7
Os04g0193200 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 1.2e-07 63.5 246 25.6
Os08g0206700 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 1.2e-07 63.5 57 57.9
Aa31LG3G8610 Aethionema arabicum HOM05D012366 ORTHO05D003332 2.0e-07 62.8 121 35.5
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.6e-07 62.4 525 23.6
Zm00001eb376080 Zea mays HOM05D003520 ORTHO05D003332 2.6e-07 62.4 54 51.9
Zm00001eb338110 Zea mays HOM05D003520 ORTHO05D003332 3.4e-07 62.0 54 51.9
Cpa.g.sc107.38 Carica papaya HOM05D003520 ORTHO05D003332 4.4e-07 61.6 234 25.2
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 5.7e-07 61.2 321 23.4
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 5.7e-07 61.2 55 50.9
vmacro06696 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 5.7e-07 61.2 58 46.6
Gohir.D12G259800 Gossypium hirsutum HOM05D003520 ORTHO05D003332 9.8e-07 60.5 396 25.5
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 1.3e-06 60.1 119 31.9
AL8G26610 Arabidopsis lyrata HOM05D012366 ORTHO05D003332 1.7e-06 59.7 266 24.1
DCAR_020242 Daucus carota HOM05D003520 ORTHO05D003332 1.7e-06 59.7 225 23.1
Atru.chr1.477_Atru.chr1.478 Acer truncatum HOM05D003520 ORTHO05D003332 2.2e-06 59.3 315 24.8
Ah.07g207320 Amaranthus hybridus HOM05D025484 ORTHO05D017259 2.2e-06 59.3 48 58.3
AUR62016000 Chenopodium quinoa HOM05D025484 ORTHO05D003332 2.2e-06 59.3 48 58.3
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 2.2e-06 59.3 80 38.8
Thhalv10012954m.g Eutrema salsugineum HOM05D012366 ORTHO05D003332 2.8e-06 58.9 146 27.4
ECA238G0250 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.9e-06 58.2 57 45.6
ECA238G4163 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.3e-06 57.4 52 48.1


User provided reference genes

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