Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 3530.3 1863 100.0
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 3087.0 1873 87.3
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2939.4 1880 82.9
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2926.7 1879 81.2
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2874.7 1878 81.0
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2870.1 1881 81.7
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2860.5 1878 80.6
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2853.9 1892 80.9
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2838.9 1916 79.9
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2819.3 1878 80.4
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2798.8 1873 80.1
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2796.9 1876 80.0
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2777.3 1880 79.4
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2700.2 1879 78.0
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2600.9 1905 73.6
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2585.1 1898 73.2
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2536.9 1901 72.4
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2504.9 1887 71.9
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2504.2 1892 71.7
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2502.6 1900 71.6
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2501.9 1771 77.1
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2499.5 1879 71.4
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2498.4 1904 70.4
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2496.5 1892 71.7
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2483.8 1909 69.3
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2476.8 1892 70.9
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2468.7 1905 70.1
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2467.2 1890 71.2
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2464.1 1895 69.8
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2463.3 1895 70.8
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2461.0 1898 71.3
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2439.1 1898 70.9
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2414.8 2103 64.5
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2409.8 1896 69.1
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2390.1 1889 69.8
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2379.7 1886 68.5
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2370.1 1894 67.9
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2358.2 1736 73.8
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2350.1 1979 66.6
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2345.9 1898 66.9
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2338.5 2097 64.4
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2333.5 1950 66.8
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2310.4 1895 67.5
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2308.1 1933 67.0
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2280.4 1894 65.3
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2276.1 1896 65.7
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2273.4 1897 64.9
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2270.4 1887 65.3
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2268.0 1893 66.8
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2264.2 1893 66.9
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2252.6 1897 65.8
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2251.1 1711 69.9
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2243.0 1867 66.2
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2239.5 1885 65.7
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2239.5 1910 65.8
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2235.7 2225 57.4
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2233.0 1900 65.8
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2227.2 1896 64.6
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2223.7 1899 63.9
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2223.4 1858 65.4
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2221.0 1737 69.8
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2219.9 1895 64.0
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2206.4 1879 65.5
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2183.7 1902 64.9
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2179.1 1911 64.7
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2178.3 1863 64.6
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2169.0 1914 64.4
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2161.7 1889 63.5
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2151.3 1921 63.0
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2150.2 1881 64.1
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2146.7 1888 63.1
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2145.5 1906 64.3
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2141.7 1795 65.3
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2129.0 1894 63.8
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2120.1 1993 61.1
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2119.7 1881 63.5
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2117.8 1890 63.2
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2116.3 1881 63.2
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2114.3 1890 63.4
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 2112.8 1860 64.0
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2105.9 1931 62.5
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2101.6 1881 63.1
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 2077.8 1886 61.3
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2075.4 1979 59.1
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2058.1 1893 62.7
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1998.8 1892 61.0
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1934.1 1370 72.3
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1904.4 1515 69.2
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1862.0 1499 68.4
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1828.1 1855 56.5
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1777.3 1980 53.8
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1727.6 1969 52.6
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1669.1 1821 52.9
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1615.1 1878 51.7
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1554.7 1879 51.5
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1467.2 1209 69.1
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1457.6 937 79.4
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1412.1 1271 63.7
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1394.8 1295 62.9
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1368.6 1087 68.5
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1314.7 1478 54.3
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1261.9 1217 59.6
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1188.3 851 71.0
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1150.2 940 66.0
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 0.0e+00 1117.1 1094 60.8
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 5.3e-300 1035.4 1250 47.1
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 3.3e-286 989.6 1136 54.7
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 3.3e-286 989.6 674 75.5
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 9.4e-273 944.9 692 72.0
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 5.4e-244 849.4 871 60.5
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 8.4e-221 772.3 1130 44.9
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 8.4e-221 772.3 1284 38.7
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.6e-214 750.7 966 51.2
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 1.2e-203 715.3 448 83.3
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 6.3e-168 596.7 374 78.3
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 2.2e-157 561.6 1224 33.1
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 8.5e-149 533.1 366 73.0
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.6e-142 512.3 369 70.5
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 6.4e-136 490.3 367 68.4
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 7.6e-113 413.7 491 50.9
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 6.4e-104 384.0 304 66.4
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.1e-98 365.2 556 45.7
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 2.2e-96 359.0 523 52.8
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.9e-88 331.3 239 72.4
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 8.4e-88 330.5 299 60.5
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.9e-87 329.3 198 82.3
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 5.5e-87 327.8 214 75.2
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.1e-82 313.5 262 65.3
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 3.9e-77 295.0 1580 24.9
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 7.4e-76 290.8 1124 26.0
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 2.1e-70 272.7 170 80.6
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 1.5e-68 266.5 264 56.1
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 3.4e-57 228.8 222 58.1
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.4e-57 228.8 506 34.8
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 1.1e-52 213.8 243 53.9
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 2.6e-52 212.6 190 60.5
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.2e-51 209.5 236 53.8
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 6.3e-51 208.0 402 41.5
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 5.9e-49 201.4 170 60.6
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 7.2e-47 194.5 278 48.9
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 9.4e-47 194.1 163 60.1
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 4.0e-45 188.7 213 51.2
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 2.7e-38 166.0 106 74.5
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 3.0e-37 162.5 89 84.3
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.4e-34 153.7 126 64.3
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 5.7e-28 131.7 143 58.7
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 2.8e-27 129.4 75 90.7
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 8.3e-27 127.9 141 55.3
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 9.2e-26 124.4 148 48.6
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 7.8e-25 121.3 69 91.3
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 1.9e-23 116.7 75 78.7
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 2.5e-23 116.3 81 75.3
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 1.2e-22 114.0 87 63.2
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 5.2e-21 108.6 75 76.0
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 4.1e-18 99.0 80 68.8
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 5.4e-18 98.6 82 58.5
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 2.0e-17 96.7 58 84.5
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 2.0e-17 96.7 58 84.5
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 2.7e-17 96.3 78 67.9
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.3e-16 94.0 73 67.1
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 1.7e-16 93.6 58 82.8
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 6.6e-16 91.7 128 46.9
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 2.1e-14 86.7 41 97.6
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 3.1e-13 82.8 86 51.2
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 2.6e-12 79.7 36 97.2
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 2.6e-12 79.7 48 79.2
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 4.4e-12 79.0 53 79.2
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 9.8e-12 77.8 58 67.2
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 9.8e-12 77.8 80 52.5
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 7.8e-09 68.2 95 44.2
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 1.7e-08 67.0 69 47.8
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 4.3e-07 62.4 59 59.3
Sabra12G0046600 Salix brachista HOM05D003369 ORTHO05D004089 8.1e-06 58.2 33 78.8


User provided reference genes

Program Settings