Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0380081 Lupinus albus HOM05D004017 ORTHO05D004612 3.5e-52 208.0 104 100.0
Lj2g0020546 Lotus japonicus HOM05D004017 ORTHO05D004612 6.5e-30 134.0 78 82.1
arahy.Tifrunner.gnm1.ann1.BKHX3W Arachis hypogaea HOM05D004017 ORTHO05D004612 1.3e-27 126.3 77 80.5
arahy.Tifrunner.gnm1.ann1.LHXL5N Arachis hypogaea HOM05D004017 ORTHO05D004612 1.3e-27 126.3 77 80.5
TPR.G33889 Trifolium pratense HOM05D004017 ORTHO05D004612 3.0e-27 125.2 74 81.1
Psat2g148040 Pisum sativum HOM05D004017 ORTHO05D004612 2.5e-26 122.1 74 78.4
Phvul.002G116900 Phaseolus vulgaris HOM05D004017 ORTHO05D004612 3.3e-26 121.7 78 76.9
Medtr5g024250 Medicago truncatula HOM05D004017 ORTHO05D004612 2.1e-25 119.0 74 74.3
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 3.7e-25 118.2 74 78.4
Lj2A500T36 Lonicera japonica HOM05D004017 ORTHO05D004612 8.2e-25 117.1 74 78.4
QL06p053019 Quercus lobata HOM05D004017 ORTHO05D004612 2.4e-24 115.5 82 72.0
Glyma.01G158400 Glycine max HOM05D004017 ORTHO05D004612 4.1e-24 114.8 78 75.6
TWI09G1144 Tripterygium wilfordii HOM05D004017 ORTHO05D004612 4.1e-24 114.8 74 75.7
Prupe.7G183500 Prunus persica HOM05D004017 ORTHO05D004612 2.0e-23 112.5 74 71.6
GSVIVG01026635001 Vitis vinifera HOM05D004017 ORTHO05D004612 2.6e-23 112.1 74 71.6
FAN28G2227 Fragaria x ananassa HOM05D004017 ORTHO05D004612 4.5e-23 111.3 75 72.0
CsaV3_3G000200 Cucumis sativus L. HOM05D004017 ORTHO05D004612 5.8e-23 110.9 74 70.3
MD02G1114700 Malus domestica HOM05D004017 ORTHO05D004612 7.6e-23 110.5 74 71.6
DCAR_016694 Daucus carota HOM05D004017 ORTHO05D004612 1.0e-22 110.2 75 70.7
Dinv28320 Davidia involucrata HOM05D004017 ORTHO05D004612 1.0e-22 110.2 74 73.0
Sed0025898 Sechium edule HOM05D004017 ORTHO05D004612 1.3e-22 109.8 75 69.3
Atru.chr3.128 Acer truncatum HOM05D004017 ORTHO05D004612 2.2e-22 109.0 74 71.6
Actinidia22894 Actinidia chinensis HOM05D004017 ORTHO05D004612 2.2e-22 109.0 74 70.3
MELO3C013715.2 Cucumis melo HOM05D004017 ORTHO05D004612 2.2e-22 109.0 74 68.9
FAN23G1226 Fragaria x ananassa HOM05D004017 ORTHO05D004612 2.2e-22 109.0 74 68.9
Rhsim10G0195200 Rhododendron simsii HOM05D004017 ORTHO05D004612 2.2e-22 109.0 79 69.6
Nitab4.5_0001467g0040 Nicotiana tabacum HOM05D004017 ORTHO05D004612 2.9e-22 108.6 74 68.9
Cpa.g.sc6.367 Carica papaya HOM05D004017 ORTHO05D004612 3.8e-22 108.2 74 70.3
FvH4_1g10270 Fragaria vesca HOM05D004017 ORTHO05D004612 3.8e-22 108.2 74 71.6
FAN19G1215 Fragaria x ananassa HOM05D004017 ORTHO05D004612 3.8e-22 108.2 74 71.6
FAN26G0543 Fragaria x ananassa HOM05D004017 ORTHO05D004612 3.8e-22 108.2 74 71.6
HanXRQChr14g0442551 Helianthus annuus HOM05D004017 ORTHO05D004612 5.0e-22 107.8 74 73.0
RcHm_v2.0_Chr2g0097091 Rosa chinensis HOM05D004017 ORTHO05D004612 6.5e-22 107.5 74 70.3
TAR628G0231 Trochodendron aralioides HOM05D004017 ORTHO05D004612 6.5e-22 107.5 79 68.4
CiPaw.07G002300 Carya illinoinensis HOM05D004017 ORTHO05D004612 8.4e-22 107.1 82 68.3
Aa31LG6G12480 Aethionema arabicum HOM05D004017 ORTHO05D004612 1.1e-21 106.7 74 67.6
Manes.02G114300 Manihot esculenta HOM05D004017 ORTHO05D004612 1.1e-21 106.7 74 70.3
Thhalv10024245m.g Eutrema salsugineum HOM05D004017 ORTHO05D004612 1.4e-21 106.3 74 68.9
Hma1.2p1_0300F.1_g117960 Hydrangea macrophylla HOM05D004017 ORTHO05D004612 1.9e-21 105.9 74 70.3
Thecc.01G005000 Theobroma cacao HOM05D004017 ORTHO05D004612 1.9e-21 105.9 74 70.3
C07p61210 Brassica napus HOM05D004017 ORTHO05D004612 4.2e-21 104.8 74 68.9
CARHR243850 Cardamine hirsuta HOM05D004017 ORTHO05D004612 4.2e-21 104.8 74 68.9
Cc07_g11910 Coffea canephora HOM05D004017 ORTHO05D004612 4.2e-21 104.8 74 70.3
Gohir.A02G178100 Gossypium hirsutum HOM05D004017 ORTHO05D004612 4.2e-21 104.8 74 68.9
Sp7g33300 Schrenkiella parvula HOM05D004017 ORTHO05D004612 4.2e-21 104.8 74 68.9
Sabra05G0084300 Salix brachista HOM05D004017 ORTHO05D004612 5.5e-21 104.4 75 70.7
Duzib147G1448 Durio zibethinus HOM05D004017 ORTHO05D004612 7.2e-21 104.0 74 68.9
ECA238G2486 Erigeron canadensis HOM05D004017 ORTHO05D004612 7.2e-21 104.0 74 71.6
Gohir.D03G001700 Gossypium hirsutum HOM05D004017 ORTHO05D004612 7.2e-21 104.0 74 68.9
Lsat_1_v5_gn_2_73681 Lactuca sativa HOM05D004017 ORTHO05D004612 7.2e-21 104.0 74 71.6
Potri.005G101900 Populus trichocarpa HOM05D004017 ORTHO05D004612 7.2e-21 104.0 75 72.0
BolC7t46547H Brassica oleracea HOM05D004017 ORTHO05D004612 9.3e-21 103.6 74 68.9
Gorai.003G002000 Gossypium raimondii HOM05D004017 ORTHO05D004612 1.2e-20 103.2 74 67.6
THA.LOC104819715 Tarenaya hassleriana HOM05D004017 ORTHO05D004612 1.2e-20 103.2 74 67.6
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 1.6e-20 102.8 74 63.5
PSO541G0703 Papaver somniferum HOM05D004017 ORTHO05D004612 1.6e-20 102.8 74 67.6
PGR142G4352 Punica granatum HOM05D004017 ORTHO05D004612 1.6e-20 102.8 77 68.8
A03p63640 Brassica napus HOM05D004017 ORTHO05D004612 3.5e-20 101.7 74 67.6
Aqoxy6G01621 Aquilegia oxysepala HOM05D004017 ORTHO05D004612 4.6e-20 101.3 81 63.0
AT4G35520 Arabidopsis thaliana HOM05D004017 ORTHO05D004612 4.6e-20 101.3 74 66.2
Carub.0007s0481 Capsella rubella HOM05D004017 ORTHO05D004612 4.6e-20 101.3 74 66.2
Migut.L00849 Erythranthe guttata HOM05D004017 ORTHO05D004612 4.6e-20 101.3 74 64.9
vmacro20628 Vaccinium macrocarpon HOM05D004017 ORTHO05D004612 4.6e-20 101.3 72 68.1
AL7G15650 Arabidopsis lyrata HOM05D004017 ORTHO05D004612 6.1e-20 100.9 74 64.9
Migut.L00851 Erythranthe guttata HOM05D004017 ORTHO05D004612 1.3e-19 99.8 74 64.9
Ciclev10024702m.g Citrus clementina HOM05D004017 ORTHO05D004612 3.0e-19 98.6 74 64.9
Eucgr.J02538 Eucalyptus grandis HOM05D004017 ORTHO05D004612 3.9e-19 98.2 76 64.5
Nn6g31689 Nelumbo nucifera HOM05D004017 ORTHO05D004612 5.1e-19 97.8 74 64.9
Oeu045735.2 Olea europaea HOM05D004017 ORTHO05D004612 5.1e-19 97.8 74 67.6
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 5.1e-19 97.8 74 63.5
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 6.7e-19 97.4 74 62.2
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 1.1e-18 96.7 74 64.9
BraA03t15435Z Brassica rapa HOM05D004017 ORTHO05D004612 1.5e-18 96.3 74 64.9
SGA_v2.0_scaffold61G21182 Striga asiatica HOM05D004017 ORTHO05D004612 2.5e-18 95.5 74 67.6
CANSAT25G1082 Cannabis sativa HOM05D004017 ORTHO05D004612 3.3e-18 95.1 74 64.9
HPP92_020507 Vanilla planifolia HOM05D004017 ORTHO05D004612 1.3e-17 93.2 74 62.2
Os09g0551900 Oryza sativa ssp. japonica HOM05D004017 ORTHO05D004612 2.2e-17 92.4 84 57.1
Zm00001eb104360 Zea mays HOM05D004017 ORTHO05D004612 3.7e-17 91.7 74 59.5
Hund03598 Selenicereus undatus HOM05D004017 ORTHO05D004612 1.4e-16 89.7 82 58.5
ATR0807G072 Amborella trichopoda HOM05D004017 ORTHO05D004612 1.8e-16 89.4 74 60.8
Sc03g0003980 Simmondsia chinensis HOM05D004017 ORTHO05D004612 1.2e-15 86.7 74 58.1
CSS0031759 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 7.7e-15 84.0 57 73.7
Nitab4.5_0004608g0010 Nicotiana tabacum HOM05D004017 ORTHO05D004612 3.8e-14 81.6 56 67.9
Ca_24985_v3 Cicer arietinum L. HOM05D004017 ORTHO05D004612 1.1e-13 80.1 60 61.7
COL.COLO4_22554 Corchorus olitorius HOM05D004017 ORTHO05D004612 1.2e-12 76.6 58 63.8
MD15G1230500 Malus domestica HOM05D004017 ORTHO05D004612 5.1e-11 71.2 52 63.5
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.3e-09 66.6 71 49.3
Mapoly0006s0222 Marchantia polymorpha HOM05D004017 ORTHO05D004612 9.1e-08 60.5 74 43.2
Cre07.g336650 Chlamydomonas reinhardtii HOM05D004017 ORTHO05D004612 3.4e-07 58.5 74 41.9
MBI05_g14359_MAGBIO Magnolia biondii HOM05D004017 ORTHO05D004612 3.8e-06 55.1 39 66.7


User provided reference genes

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