Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 0.0e+00 1932.1 963 100.0
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 0.0e+00 1581.6 956 83.9
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 0.0e+00 1458.0 967 76.0
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 0.0e+00 1457.6 968 76.5
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 0.0e+00 1450.3 968 76.3
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 0.0e+00 1448.0 969 75.4
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 0.0e+00 1447.6 967 76.1
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 0.0e+00 1437.9 932 77.0
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 0.0e+00 1436.4 969 75.4
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 0.0e+00 1377.8 976 73.5
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 0.0e+00 1377.8 976 73.5
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 0.0e+00 1350.9 966 72.7
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 0.0e+00 1293.5 943 72.0
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 0.0e+00 1082.4 964 59.1
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 1.3e-311 1073.2 973 58.6
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 4.8e-305 1051.2 1002 56.7
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 2.4e-304 1048.9 981 57.2
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 8.5e-302 1040.4 966 57.3
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.6e-300 1036.2 972 57.1
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 3.3e-298 1028.5 981 56.3
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 1.4e-296 1023.1 985 55.1
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 6.1e-292 1007.7 978 55.7
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 4.0e-291 1005.0 981 55.0
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.3e-289 1000.0 981 54.9
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 7.7e-287 990.7 981 55.0
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 6.6e-286 987.6 978 54.2
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 1.5e-285 986.5 974 55.0
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 3.3e-285 985.3 973 55.7
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 1.2e-284 983.4 973 54.3
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.0e-283 978.8 988 53.9
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 2.6e-282 975.7 976 53.7
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 4.9e-281 971.5 977 53.9
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 2.3e-278 962.6 982 54.2
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 2.5e-277 959.1 982 53.1
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 4.3e-277 958.4 934 54.2
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 9.5e-277 957.2 903 56.0
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 5.2e-275 951.4 892 57.0
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 2.0e-274 949.5 956 53.8
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.2e-273 946.0 954 53.6
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 8.3e-273 944.1 968 52.8
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.5e-271 938.7 1014 51.6
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 1.3e-270 936.8 988 53.9
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 5.6e-269 931.4 992 51.6
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.6e-268 929.9 980 53.6
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 4.0e-267 925.2 946 53.3
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.0e-266 922.9 980 53.2
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.0e-266 922.9 980 53.1
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 4.1e-264 915.2 991 51.0
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 3.9e-262 908.7 972 51.2
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 5.6e-261 904.8 1066 47.7
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 1.4e-259 900.2 956 52.3
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 3.1e-259 899.0 977 51.2
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 3.1e-259 899.0 959 50.7
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 4.0e-259 898.7 967 49.9
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.5e-258 896.7 966 51.0
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 2.0e-258 896.3 975 50.8
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 2.0e-258 896.3 981 50.8
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 2.6e-258 896.0 969 51.5
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 7.5e-258 894.4 913 52.9
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 2.9e-257 892.5 955 50.7
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 2.1e-255 886.3 975 51.2
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 3.5e-255 885.6 833 55.9
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 1.7e-254 883.2 948 51.6
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 1.5e-253 880.2 963 50.7
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 3.1e-251 872.5 970 49.6
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 4.0e-251 872.1 954 49.9
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 8.9e-251 870.9 954 50.2
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 9.9e-250 867.5 955 49.0
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 6.4e-249 864.8 952 49.7
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 3.2e-248 862.4 977 49.9
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 1.0e-246 857.4 989 50.5
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 6.6e-246 854.7 940 50.9
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 1.5e-245 853.6 960 49.6
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.5e-245 852.8 978 49.7
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 2.5e-245 852.8 964 50.8
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 9.6e-245 850.9 959 50.7
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 4.8e-244 848.6 1001 49.6
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 6.2e-244 848.2 962 49.5
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 3.1e-243 845.9 821 53.8
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 2.9e-241 839.3 966 48.1
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.9e-241 839.3 977 49.2
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 1.9e-240 836.6 962 47.9
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 4.2e-240 835.5 958 50.5
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 7.8e-239 831.2 686 60.8
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 4.3e-237 825.5 956 48.5
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 6.2e-236 821.6 962 47.9
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 2.4e-235 819.7 822 53.3
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 2.6e-234 816.2 977 47.6
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 8.4e-233 811.2 981 47.0
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 5.4e-232 808.5 951 49.0
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 6.7e-230 801.6 974 47.5
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 2.4e-227 793.1 923 48.4
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 6.9e-227 791.6 674 60.1
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 1.5e-226 790.4 701 57.1
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 3.8e-225 785.8 1006 45.3
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 3.9e-222 775.8 991 46.5
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 3.7e-220 769.2 970 46.5
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 6.7e-214 748.4 980 44.7
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 2.2e-212 743.4 701 54.8
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.8e-206 723.8 997 44.3
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 8.8e-206 721.5 792 50.0
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 2.2e-204 716.8 816 47.7
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 3.7e-204 716.1 609 59.8
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 4.5e-202 709.1 968 44.9
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 4.8e-196 689.1 973 43.6
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 1.5e-192 677.6 964 42.1
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.5e-192 677.6 945 43.7
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 1.1e-187 661.4 673 51.1
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 8.0e-183 645.2 460 68.9
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.3e-180 635.6 746 47.7
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.2e-170 604.7 440 67.0
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 9.5e-168 595.1 658 49.1
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 5.7e-165 585.9 763 43.5
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.2e-151 541.6 939 38.6
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.8e-150 537.7 941 39.0
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 2.3e-150 537.3 620 46.0
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 2.0e-149 534.3 851 39.5
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 1.1e-147 528.5 513 51.3
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 2.5e-144 517.3 710 43.2
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 7.6e-141 505.8 707 42.6
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.9e-131 474.6 746 39.4
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 3.2e-123 447.2 691 39.5
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 1.2e-117 428.7 517 48.4
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 5.5e-115 419.9 718 35.9
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 6.3e-103 379.8 286 64.7
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 2.3e-97 361.3 543 43.6
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 6.7e-97 359.8 493 41.8
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 3.7e-95 354.0 279 65.6
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 3.4e-93 347.4 445 45.4
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.1e-80 305.8 185 77.3
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 2.2e-71 275.0 221 63.8
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 1.8e-70 271.9 243 58.4
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.5e-67 261.5 177 71.2
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 8.3e-63 246.5 256 53.1
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 1.0e-57 229.6 238 49.2
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 1.5e-56 225.7 157 70.7
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 9.2e-54 216.5 170 67.1
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 7.7e-53 213.4 133 76.7
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 3.5e-45 188.0 277 43.7
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 4.6e-45 187.6 174 53.4
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 2.6e-40 171.8 114 68.4
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.9e-35 155.6 312 33.7
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 6.4e-31 140.6 537 25.5
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.9e-27 129.0 80 76.2
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 3.6e-26 124.8 198 39.9
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 8.6e-20 103.6 301 31.9
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 1.5e-19 102.8 547 24.5
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 2.6e-16 92.0 346 29.8
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 1.9e-14 85.9 96 44.8
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.4e-14 85.5 43 90.7
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 5.3e-09 67.8 47 63.8
Cre16.g683437 Chlamydomonas reinhardtii HOM05D004501 ORTHO05D004944 3.2e-06 58.5 546 21.6
Psat4g189680 Pisum sativum HOM05D004501 ORTHO05D004944 9.3e-06 57.0 35 74.3


User provided reference genes

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