Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 7.4e-122 440.7 240 100.0
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 1.2e-95 353.6 241 80.9
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 1.1e-69 267.3 229 65.9
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 8.1e-68 261.2 229 64.6
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 2.3e-67 259.6 234 65.0
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 5.2e-67 258.5 222 65.3
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 5.2e-67 258.5 219 69.4
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 6.8e-67 258.1 222 65.3
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 1.5e-66 256.9 234 65.4
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 2.6e-66 256.1 228 64.5
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.6e-66 256.1 222 64.4
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 1.1e-64 250.8 229 64.2
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.1e-64 250.8 231 62.8
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 4.1e-64 248.8 227 63.4
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 4.1e-64 248.8 218 67.0
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 7.1e-64 248.1 222 64.9
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 9.2e-64 247.7 227 62.1
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 1.2e-63 247.3 218 67.9
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 1.6e-63 246.9 227 64.8
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 4.6e-63 245.4 233 63.1
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 6.0e-63 245.0 235 63.8
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.0e-62 244.2 240 60.4
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.3e-62 243.8 238 61.8
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 6.6e-62 241.5 219 63.0
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 6.6e-62 241.5 240 62.5
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 8.6e-62 241.1 275 54.2
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 8.6e-62 241.1 224 64.3
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 8.6e-62 241.1 246 62.2
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.9e-61 240.0 238 60.5
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 2.5e-61 239.6 233 62.7
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 4.3e-61 238.8 223 61.4
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 7.3e-61 238.0 222 64.9
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 7.3e-61 238.0 229 62.9
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 9.6e-61 237.7 256 57.0
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 2.1e-60 236.5 221 62.0
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 3.1e-59 232.6 222 60.8
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 4.0e-59 232.3 240 59.2
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 6.9e-59 231.5 221 62.0
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 8.9e-59 231.1 235 62.6
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 5.8e-58 228.4 230 60.9
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.3e-57 227.3 239 58.6
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.7e-57 226.9 241 57.3
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.9e-57 226.1 219 60.3
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 2.9e-57 226.1 227 60.4
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 3.8e-57 225.7 241 59.3
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 4.9e-57 225.3 241 59.3
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 6.4e-57 224.9 234 58.5
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 6.4e-57 224.9 219 59.8
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 8.4e-57 224.6 280 53.2
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 8.4e-57 224.6 280 53.2
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 5.4e-56 221.9 233 57.9
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 1.2e-55 220.7 235 60.4
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.6e-55 220.3 222 58.1
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 2.1e-55 219.9 237 60.8
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 2.1e-55 219.9 223 58.7
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 6.6e-54 214.9 234 60.3
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 8.7e-54 214.5 205 62.0
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 1.1e-53 214.2 235 57.4
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 1.9e-53 213.4 220 58.6
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 7.3e-53 211.5 257 54.5
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 1.3e-52 210.7 235 55.7
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 1.6e-52 210.3 234 56.8
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 2.1e-52 209.9 222 56.3
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 2.1e-52 209.9 222 55.9
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.1e-52 209.9 224 57.6
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 2.8e-52 209.5 226 58.0
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 3.6e-52 209.1 235 57.0
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 3.6e-52 209.1 233 56.2
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 3.6e-52 209.1 242 54.5
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 3.6e-52 209.1 260 53.1
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 8.1e-52 208.0 241 54.4
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 1.1e-51 207.6 216 58.3
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 6.9e-51 204.9 239 54.4
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 9.0e-51 204.5 241 55.6
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 9.9e-50 201.1 229 56.3
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 2.9e-49 199.5 234 56.8
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 4.9e-49 198.7 227 54.6
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 6.4e-49 198.4 234 54.3
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 1.4e-48 197.2 229 58.5
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.4e-48 196.4 234 53.0
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 2.4e-48 196.4 234 55.6
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 2.4e-48 196.4 215 54.0
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 2.4e-48 196.4 236 55.9
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 1.2e-47 194.1 234 55.1
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 2.1e-47 193.4 214 57.0
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 2.7e-47 193.0 234 54.7
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 2.7e-47 193.0 234 54.7
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 4.6e-47 192.2 219 55.7
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 1.0e-46 191.0 225 55.1
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 1.0e-46 191.0 235 53.6
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 3.9e-46 189.1 238 50.0
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 3.9e-46 189.1 239 50.2
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 5.1e-46 188.7 227 52.9
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 6.7e-46 188.3 227 53.7
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 6.7e-46 188.3 227 53.7
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 8.7e-46 188.0 234 55.6
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 4.3e-45 185.7 238 53.4
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 1.6e-44 183.7 240 52.5
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 6.2e-44 181.8 235 52.8
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 6.2e-44 181.8 235 52.8
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 6.2e-44 181.8 235 52.8
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 8.1e-44 181.4 235 51.5
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 8.1e-44 181.4 219 51.1
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 1.8e-43 180.3 217 55.3
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 2.4e-43 179.9 330 41.5
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 9.0e-43 177.9 229 52.0
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 2.0e-42 176.8 215 53.5
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 4.5e-42 175.6 233 49.8
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 5.8e-42 175.3 186 58.1
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 5.8e-42 175.3 186 58.1
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 9.9e-42 174.5 194 58.2
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 4.9e-41 172.2 214 51.4
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 9.3e-40 167.9 227 49.3
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 3.0e-38 162.9 222 49.1
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 8.7e-38 161.4 218 51.8
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 3.3e-37 159.5 218 48.6
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 2.1e-36 156.8 186 53.2
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 8.2e-36 154.8 210 48.1
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 2.6e-34 149.8 171 57.9
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 4.9e-33 145.6 222 45.5
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 1.9e-32 143.7 219 45.2
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.9e-32 143.7 220 46.4
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.9e-32 143.7 220 46.4
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 3.2e-32 142.9 172 54.1
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 7.4e-29 131.7 313 37.7
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 1.8e-27 127.1 204 46.6
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 5.3e-27 125.6 164 51.2
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 1.9e-24 117.1 85 74.1
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 7.2e-24 115.2 214 41.6
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 2.1e-23 113.6 131 52.7
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 3.6e-23 112.8 212 39.6
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 7.9e-23 111.7 155 52.3
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 4.8e-20 102.4 238 36.6
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.2e-17 93.6 212 35.4
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 1.4e-16 90.9 161 43.5
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 1.0e-14 84.7 124 49.2
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 4.4e-13 79.3 75 57.3
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 2.8e-12 76.6 80 61.2
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 6.5e-09 65.5 91 47.3
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 1.1e-08 64.7 39 79.5
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 2.5e-08 63.5 56 64.3
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 2.5e-08 63.5 56 64.3
Lj5A253T37 Lonicera japonica HOM05D012292 ORTHO05D012234 3.2e-08 63.2 225 33.3
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 7.2e-08 62.0 83 43.4
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 6.1e-07 58.9 43 69.8
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.4e-06 57.8 43 69.8


User provided reference genes

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