Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 2.4e-187 658.7 333 100.0
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 3.0e-145 518.8 334 77.5
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 3.9e-145 518.5 333 77.5
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 5.1e-145 518.1 333 77.8
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 3.1e-142 508.8 314 80.3
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 6.9e-142 507.7 329 78.7
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 1.5e-141 506.5 330 76.4
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 2.2e-140 502.7 314 79.6
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 2.7e-138 495.7 334 74.6
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 1.8e-134 483.0 331 72.5
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 2.2e-132 476.1 322 75.5
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 3.8e-132 475.3 327 74.6
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 5.1e-129 464.9 331 72.2
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 1.1e-128 463.8 335 71.6
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 1.5e-128 463.4 338 69.8
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 6.2e-127 458.0 334 68.6
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 1.8e-126 456.4 334 68.9
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 1.8e-126 456.4 334 69.8
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.2e-125 453.8 339 68.1
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.2e-125 453.8 339 68.1
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 2.0e-125 453.0 338 69.2
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 5.8e-125 451.4 337 68.2
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 1.3e-124 450.3 341 68.9
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 2.2e-124 449.5 337 67.4
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 3.8e-124 448.7 334 68.6
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 6.5e-124 448.0 338 66.9
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 1.1e-123 447.2 337 65.9
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 2.1e-122 443.0 322 67.1
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 4.6e-122 441.8 342 67.5
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 6.0e-122 441.4 318 69.5
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 1.0e-121 440.7 333 68.2
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 1.3e-121 440.3 337 68.5
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 2.3e-121 439.5 343 65.6
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 2.3e-121 439.5 337 68.8
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 3.9e-121 438.7 333 68.2
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 6.7e-121 438.0 334 66.2
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 1.5e-120 436.8 341 65.7
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 2.5e-120 436.0 316 68.0
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 3.3e-120 435.6 334 66.2
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 4.3e-120 435.3 333 66.7
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 2.8e-119 432.6 343 65.0
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 3.1e-118 429.1 335 65.1
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 3.1e-118 429.1 335 64.8
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 5.3e-118 428.3 335 64.5
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 6.9e-118 427.9 322 67.7
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.2e-117 427.2 333 65.8
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.2e-117 427.2 333 65.8
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 2.6e-117 426.0 333 65.5
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 4.5e-117 425.2 338 64.5
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 5.9e-117 424.9 338 64.5
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 7.7e-117 424.5 337 61.7
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 7.7e-117 424.5 333 65.2
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 7.7e-117 424.5 329 66.0
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 7.7e-117 424.5 331 64.4
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 1.0e-116 424.1 340 65.6
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.3e-116 423.7 333 65.2
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 2.9e-116 422.5 331 66.5
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 3.8e-116 422.2 340 62.6
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 6.5e-116 421.4 331 64.0
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 8.5e-116 421.0 319 66.1
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 3.2e-115 419.1 331 63.7
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 4.2e-115 418.7 340 62.9
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 5.5e-115 418.3 344 63.1
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 1.2e-114 417.2 335 68.1
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 1.2e-114 417.2 327 64.2
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 2.7e-114 416.0 336 63.1
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 3.6e-114 415.6 336 63.7
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 6.1e-114 414.8 340 63.5
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 6.1e-114 414.8 336 63.4
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 7.9e-114 414.5 334 65.0
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 1.0e-113 414.1 330 64.5
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 1.0e-113 414.1 340 62.4
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.4e-113 413.7 331 63.4
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 2.3e-113 412.9 340 62.1
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 3.0e-113 412.5 322 64.0
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 3.9e-113 412.1 342 61.1
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 5.1e-113 411.8 342 61.1
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 5.1e-113 411.8 342 61.1
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 5.1e-113 411.8 322 64.9
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 8.8e-113 411.0 340 62.4
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 1.1e-112 410.6 344 61.3
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.1e-112 410.6 331 63.4
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 1.5e-112 410.2 345 62.0
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 2.0e-112 409.8 341 63.9
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 7.4e-112 407.9 340 60.9
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 7.4e-112 407.9 340 60.6
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 7.4e-112 407.9 327 62.4
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 7.4e-112 407.9 327 62.4
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 2.2e-111 406.4 342 60.2
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 2.2e-111 406.4 332 60.5
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 8.2e-111 404.4 340 61.2
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 8.2e-111 404.4 337 63.2
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 8.2e-111 404.4 330 62.4
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 2.4e-110 402.9 340 60.9
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 6.9e-110 401.4 340 61.2
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 2.6e-109 399.4 316 63.3
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 3.4e-109 399.1 339 62.5
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 5.9e-109 398.3 337 62.0
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 7.7e-109 397.9 371 56.3
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 1.7e-108 396.7 346 60.1
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 4.7e-106 388.7 332 61.7
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.8e-105 386.7 329 62.0
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 8.8e-105 384.4 339 59.6
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 2.6e-104 382.9 343 59.5
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 2.0e-101 373.2 340 58.2
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 8.5e-100 367.9 264 68.9
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 1.2e-98 364.0 319 56.7
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 6.3e-95 351.7 287 58.9
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 1.8e-94 350.1 316 58.9
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 1.8e-86 323.6 331 54.1
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 5.5e-83 312.0 253 63.6
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.4e-81 307.4 322 47.5
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 4.0e-81 305.8 355 45.9
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 2.3e-68 263.5 314 42.0
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 6.4e-63 245.4 255 53.3
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 2.7e-61 240.0 221 57.0
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 1.5e-56 224.2 184 59.2
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 7.5e-56 221.9 184 58.7
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 1.3e-55 221.1 311 40.5
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 2.4e-54 216.9 168 64.3
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 1.0e-52 211.5 143 71.3
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 6.8e-49 198.7 159 64.8
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 3.4e-48 196.4 287 38.0
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 3.0e-44 183.3 136 66.2
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 7.1e-38 162.2 143 58.0
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 5.6e-35 152.5 100 71.0
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 7.3e-35 152.1 119 61.3
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 2.8e-34 150.2 102 69.6
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 3.6e-34 149.8 99 71.7
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 8.1e-34 148.7 99 70.7
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 2.4e-33 147.1 99 69.7
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 1.2e-32 144.8 118 58.5
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 3.4e-32 143.3 342 30.1
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 9.9e-32 141.7 118 57.6
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 3.8e-31 139.8 298 31.5
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 4.9e-31 139.4 106 61.3
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 1.9e-30 137.5 133 57.1
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 5.4e-30 136.0 195 37.9
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 2.3e-28 130.6 172 40.7
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 3.0e-28 130.2 92 65.2
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 1.1e-27 128.3 128 57.0
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 3.6e-26 123.2 171 40.9
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 4.0e-25 119.8 94 60.6
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 4.0e-25 119.8 94 60.6
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 5.8e-24 115.9 182 44.0
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 2.2e-23 114.0 114 52.6
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.1e-22 111.7 165 34.5
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 9.6e-19 98.6 100 50.0
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 7.6e-16 89.0 140 42.1
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 1.0e-12 78.6 125 43.2
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 9.6e-11 72.0 129 42.6
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 4.8e-10 69.7 43 74.4
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 4.5e-08 63.2 39 71.8
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 5.8e-08 62.8 49 65.3
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 3.2e-06 57.0 184 32.1
MCO09G018 Micromonas commoda HOM05D003335 ORTHO05D003853 3.2e-06 57.0 261 22.2
THA.LOC104801067 Tarenaya hassleriana HOM05D003335 ORTHO05D003853 9.3e-06 55.5 266 24.8


User provided reference genes

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