Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 3648.2 1886 100.0
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 3205.2 1900 87.9
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 3169.8 1900 86.7
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 3124.3 1894 85.8
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 3105.5 1896 85.2
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 3093.9 1900 84.7
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 3085.4 1903 84.7
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 3077.3 1903 84.1
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2907.9 2322 68.9
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2822.0 1898 76.1
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2818.5 1902 75.9
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2818.5 1899 76.4
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2785.4 1900 75.3
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2780.4 1893 75.0
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2772.3 1895 74.8
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2753.4 1903 75.0
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2749.5 1897 73.9
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2746.8 1895 74.0
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2741.5 1896 73.8
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2733.4 1900 73.9
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2732.2 1896 73.4
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2723.3 1932 73.4
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2723.0 1903 73.9
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2711.4 1896 73.1
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2688.3 1916 73.7
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2682.5 1895 72.5
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2677.5 1912 72.6
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2674.8 1900 72.6
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2662.9 1928 71.7
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2660.9 2034 69.7
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2657.5 1904 71.7
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2647.1 1902 71.8
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2631.3 1898 71.5
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2629.0 1959 70.1
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2604.7 1902 71.9
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 2595.5 1901 69.8
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2570.8 1724 76.5
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2564.6 1900 69.2
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 2561.6 1901 69.0
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2558.1 1899 70.2
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2551.9 1903 69.0
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 2549.2 1890 68.6
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2547.3 1899 70.1
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2546.2 1898 69.0
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2530.7 1901 68.6
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2518.4 1901 68.3
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2515.0 1900 68.2
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2509.9 1900 68.1
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2496.1 1905 67.9
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2475.3 1908 68.0
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2470.7 1898 67.2
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2469.1 1893 68.3
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2466.0 1968 66.7
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2461.0 1903 67.8
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 2459.5 1890 66.8
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2457.2 1912 67.8
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 2454.1 1895 67.2
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 2451.4 1889 66.5
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 2449.5 1889 66.5
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2446.0 1918 67.0
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 2444.8 1892 66.8
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2427.5 1962 64.6
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2422.1 1644 75.0
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 2410.2 2030 63.0
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 2390.1 1928 64.8
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 2385.1 1900 65.9
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2383.6 1899 65.8
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 2380.1 1890 65.1
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2377.1 1894 65.3
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2372.0 1894 64.9
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 2367.4 1895 64.9
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2348.9 1898 64.8
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2318.5 1596 74.6
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 2315.0 1892 63.1
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2301.6 1935 63.3
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2291.9 1898 63.6
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 2228.0 1465 80.2
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 2183.3 1512 74.9
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2169.8 1483 75.2
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1898.6 1593 62.8
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1868.2 1431 67.9
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1785.8 1196 75.7
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1719.9 1923 48.8
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1689.9 1917 48.1
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1682.2 1439 62.9
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1665.6 959 90.6
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1622.4 1927 47.3
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1619.4 1455 57.9
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1545.0 1897 49.4
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1538.1 1922 45.6
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1500.7 840 91.7
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1439.1 1211 62.0
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1371.3 1265 56.5
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1286.9 1957 40.1
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1223.8 1137 58.8
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1123.6 1646 43.8
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 3.7e-309 1065.8 1256 49.0
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 4.9e-301 1038.9 779 67.4
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 4.7e-296 1022.3 1646 41.1
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 6.0e-267 925.6 784 60.3
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.1e-260 904.8 763 60.3
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 7.8e-259 898.7 697 68.0
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 3.1e-239 833.6 693 62.8
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 2.4e-223 780.8 1056 46.5
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 4.4e-209 733.4 607 65.2
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 1.7e-205 721.5 515 72.0
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 5.2e-202 709.9 1046 40.6
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 4.4e-201 706.8 1057 41.2
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.3e-197 695.3 701 53.1
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.2e-182 645.6 795 48.8
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 2.3e-162 578.2 512 61.5
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 8.1e-155 553.1 431 70.8
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 1.8e-133 482.3 400 61.2
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 2.2e-128 465.3 412 65.0
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 7.9e-118 430.3 299 72.9
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 1.4e-111 409.5 264 82.2
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 5.0e-104 384.4 355 61.4
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 1.4e-101 376.3 230 84.3
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.7e-99 369.4 353 60.9
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 9.4e-95 353.6 330 57.6
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 4.1e-90 338.2 222 77.0
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 5.9e-89 334.3 295 61.7
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 1.0e-88 333.6 331 56.5
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.2e-84 320.1 277 62.1
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 9.4e-79 300.4 353 47.6
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 7.5e-76 290.8 307 53.1
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 5.0e-72 278.1 176 81.8
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.5e-63 249.2 189 66.1
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 7.0e-58 231.1 325 44.9
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 1.6e-57 229.9 211 63.0
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 4.3e-55 221.9 386 39.1
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 4.7e-54 218.4 227 53.3
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 4.7e-54 218.4 227 53.3
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 9.2e-50 204.1 179 59.2
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 3.5e-49 202.2 216 52.3
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 3.5e-49 202.2 311 43.1
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 4.3e-47 195.3 393 36.6
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 2.1e-46 193.0 157 66.2
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 2.3e-45 189.5 126 81.7
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 1.0e-40 174.1 121 79.3
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 1.0e-40 174.1 1742 21.7
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 3.0e-40 172.6 151 63.6
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 4.6e-33 148.7 326 32.2
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.9e-32 145.6 99 64.6
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 5.6e-31 141.7 129 65.1
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 2.4e-29 136.3 773 23.0
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 3.1e-29 136.0 171 49.7
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 1.2e-28 134.0 82 78.0
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 1.3e-27 130.6 75 84.0
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 2.9e-27 129.4 117 57.3
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 4.9e-27 128.6 994 24.1
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 6.4e-27 128.3 97 67.0
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 3.2e-26 125.9 147 50.3
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.5e-23 117.1 254 34.3
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 9.6e-23 114.4 81 74.1
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 2.1e-22 113.2 76 69.7
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.1e-21 109.4 102 52.0
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 3.4e-20 105.9 101 56.4
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 1.9e-18 100.1 57 84.2
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 7.9e-17 94.7 99 50.5
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 1.0e-16 94.4 52 84.6
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 2.3e-16 93.2 99 49.5
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 8.7e-16 91.3 83 57.8
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 2.6e-12 79.7 106 52.8
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 1.1e-10 74.3 52 71.2
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 1.2e-09 70.9 44 72.7
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 6.0e-09 68.6 64 48.4
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 6.0e-09 68.6 69 62.3
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.0e-08 67.8 66 56.1
Medtr6g086755 Medicago truncatula HOM05D003776 ORTHO05D004459 2.3e-08 66.6 58 69.0
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.9e-08 65.9 50 60.0
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 6.7e-08 65.1 34 85.3
Sed0006485 Sechium edule HOM05D003776 ORTHO05D004459 8.7e-08 64.7 49 69.4
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 1.9e-07 63.5 81 50.6
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 9.6e-07 61.2 41 70.7
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 1.6e-06 60.5 63 50.8
SEGI_26904 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 3.7e-06 59.3 128 32.0
FvH4_1g02070 Fragaria vesca HOM05D000524 ORTHO05D035235 6.2e-06 58.5 47 59.6


User provided reference genes

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